View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4411_high_14 (Length: 411)
Name: NF4411_high_14
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_high_14 |
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| [»] scaffold1437 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 33139097 - 33139482
Alignment:
| Q |
18 |
atctatctcttagcaattacaccttttgtccaattgaacacttgaagttaattcacattaagaatggcaagttctcgcattgcaagatttttcatggagg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33139097 |
atctatctcttagcaattacaccttttgtccaattgaacacttgaagttaattcacattaagaatggcaagttctcgcattgcaagattttttatggagg |
33139196 |
T |
|
| Q |
118 |
tggcaccaccacaatatgtctctgttatgaggcatagagcatcaaatatgatggaaacaattactgaagaggatagggaaattagctcacatgatagtct |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| |
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|
| T |
33139197 |
tggcaccaccacaatatgtttctgttatgaggcaaagagcatcaaatatgatggaaacaattaccgaagaggatagagaaattagctcacatgataatct |
33139296 |
T |
|
| Q |
218 |
aatttcactacctaaaagttcatctgtaatttcagcttcatcttcggcatgtgcctcttctaccaatgcaagagttaatactaggtactttttgaatgaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33139297 |
aatttcactacctaaaagttcatctgtaatttcagcttcatcttcagcatgtgcctcttctaccaatgcaagagttaatactaggtactttttgaatgaa |
33139396 |
T |
|
| Q |
318 |
gttcatagaacactctcaagtttgaacaattgaaccactttgaggcatataaagctgttatgtttctttttattgttcttcttctc |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
33139397 |
gttcatagaacactctcaagtttgaacaattgaaccactttgaggcatataaagctgctatatttctttttattgttcttcttctc |
33139482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 33149106 - 33149323
Alignment:
| Q |
18 |
atctatctcttagcaattacaccttttgtc-caattgaacacttgaagttaattcacattaagaatggcaagttctcgcattgcaagatttttcatggag |
116 |
Q |
| |
|
||||||||||||| ||||||| |||| || |||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
33149106 |
atctatctcttagtgattacacattttttcgcaattgaacacttgaaactagttcacattaagaatggcaagttctcgcgttgcaaggtttttcatggag |
33149205 |
T |
|
| Q |
117 |
gtggcaccaccacaatatgtctctgttatgaggcatagagcatcaaatatgatggaaacaattactgaagaggatagggaaattagctcacatgatagtc |
216 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
33149206 |
gtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaagatgatggaaacaattgctgaagaggatagggaaattaactcacatgatagtg |
33149305 |
T |
|
| Q |
217 |
taatttcactacctaaaa |
234 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
33149306 |
taatttcactacctaaaa |
33149323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 212 - 342
Target Start/End: Original strand, 33142971 - 33143104
Alignment:
| Q |
212 |
tagtctaatttcactacctaaaagttcatctgtaatttcagcttcatcttcggcatgtgcctctt---ctaccaatgcaagagttaatactaggtacttt |
308 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||| |||| |||||||||||| | |||| |||||||||||| |
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|
| T |
33142971 |
tagtctaatttcaaaacctaaaagttcatctgcaatttcagctttatcttctgcatgtgcatcttcttctaccaatgcaacaattaacactaggtacttt |
33143070 |
T |
|
| Q |
309 |
ttgaatgaagttcatagaacactctcaagtttga |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
33143071 |
ctgaatgaagttcatagaacactctcaagtttga |
33143104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 33142808 - 33142969
Alignment:
| Q |
20 |
ctatctcttagcaattacaccttttgtc-caattgaacacttgaagttaattcacattaagaat---ggcaagttctcgcattgcaagatttttcatgga |
115 |
Q |
| |
|
||||| ||| |||||||||| |||| | ||||| |||||||||| |||||||||||| |||| | ||| |||||| ||| ||| ||||||||| | |
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|
| T |
33142808 |
ctatcacttggcaattacacatttttccacaattaaacacttgaaattaattcacatttagaaaaaagacaaattctcggattataaggtttttcatgaa |
33142907 |
T |
|
| Q |
116 |
ggtggcaccaccacaatatgtctctgttatgaggcatagagcatcaaatatgatggaaacaa |
177 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||||| |
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|
| T |
33142908 |
agtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaatatgattgaaacaa |
33142969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 34011764 - 34011981
Alignment:
| Q |
18 |
atctatctcttagcaattacaccttttgtc-caattgaacacttgaagttaattcacattaagaatggcaagttctcgcattgcaagatttttcatggag |
116 |
Q |
| |
|
||||||||||||| ||||||| |||| || |||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
34011764 |
atctatctcttagtgattacacattttttcgcaattgaacacttgaaactagttcacattaagaatggcaagttctcgcgttgcaaggtttttcatggag |
34011863 |
T |
|
| Q |
117 |
gtggcaccaccacaatatgtctctgttatgaggcatagagcatcaaatatgatggaaacaattactgaagaggatagggaaattagctcacatgatagtc |
216 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
34011864 |
gtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaagatgatggaaacaattgctgaagaggatagggaaattaactcacatgatagtg |
34011963 |
T |
|
| Q |
217 |
taatttcactacctaaaa |
234 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
34011964 |
taatttcactacctaaaa |
34011981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 3215525 - 3215308
Alignment:
| Q |
18 |
atctatctcttagcaattacaccttttgtc-caattgaacacttgaagttaattcacattaagaatggcaagttctcgcattgcaagatttttcatggag |
116 |
Q |
| |
|
||||||||||||| ||||||| |||| | |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
3215525 |
atctatctcttagtgattacacatttttccgcaattgaacacttgaaattagttcacattaagaatggcaagttctcgcgttgcaaggtttttcatggag |
3215426 |
T |
|
| Q |
117 |
gtggcaccaccacaatatgtctctgttatgaggcatagagcatcaaatatgatggaaacaattactgaagaggatagggaaattagctcacatgatagtc |
216 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||| |||||||||||||| |||||| ||||||||| ||| |
|
|
| T |
3215425 |
gtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaagatgatggaaacaattgctgaagaggataggaaaattaactcacatgacagtg |
3215326 |
T |
|
| Q |
217 |
taatttcactacctaaaa |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3215325 |
taatttcactacctaaaa |
3215308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 89 - 343
Target Start/End: Complemental strand, 32350160 - 32349906
Alignment:
| Q |
89 |
ttctcgcattgcaagatttttcatggaggtggcaccaccacaatatgtctctgttatgaggcatagagcatcaaatatgatggaaacaattactgaagag |
188 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||| |||| |||||| |||||||||||||||||||||||| |
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|
| T |
32350160 |
ttctcgcattgcaaggtttttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaatgatgatggaaacaattactgaagag |
32350061 |
T |
|
| Q |
189 |
gatagggaaattagctcacatgatagtctaatttcactacctaaaagttcatctgtaatttcagc---ttcatcttcggcatgtgcctcttctaccaatg |
285 |
Q |
| |
|
|||| |||||| |||||| |||||||| ||||||||| |||||||| |||||| || |||| | | | |||| |||||||||||||||||||||| |
|
|
| T |
32350060 |
gatatggaaatgagctcaaatgatagtgtaatttcaccacctaaaaattcatc---aacttcatctcttgctgcttctgcatgtgcctcttctaccaatg |
32349964 |
T |
|
| Q |
286 |
caagagttaatactaggtactttttgaatgaagttcatagaacactctcaagtttgaa |
343 |
Q |
| |
|
|| |||||| |||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
32349963 |
cagttgttaattctaggtacttcctgaaggaagttcatagaacactctcaagtttgaa |
32349906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 74 - 343
Target Start/End: Complemental strand, 32343040 - 32342783
Alignment:
| Q |
74 |
attaagaatggcaagttctcgcattgcaagatttttcatggaggtggcaccaccacaatatgtctctgttatgaggcatagagcatcaaatatgatggaa |
173 |
Q |
| |
|
||||| |||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||| || |||||||||||| ||||||| ||||||||| |
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|
| T |
32343040 |
attaacaatggcaaattctcgcattgcaaggtttttcatggaggtagcaccaccacagtatgttagcgtgatgaggcatagaacatcaaagatgatggaa |
32342941 |
T |
|
| Q |
174 |
acaattactgaagaggatagggaaattagctcacatgatagtctaatttcactacctaaaagttcatctgtaatttcagcttcatcttcggcatgtgcct |
273 |
Q |
| |
|
||||| || ||||| ||||||||||| | |||| |||| ||| | ||||||| ||| ||||||||| | ||||||||| || ||||| |
|
|
| T |
32342940 |
acaatcaccgaagatgatagggaaatcaactcaaatgacagtgtgatttcaccaccaaaaagttca---------ttagcttcatcacttgc---tgcct |
32342853 |
T |
|
| Q |
274 |
cttctaccaatgcaagagttaatactaggtactttttgaatgaagttcatagaacactctcaagtttgaa |
343 |
Q |
| |
|
||||||||||||||| ||||| || ||| |||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
32342852 |
cttctaccaatgcaactgttaacaccagggacttcctgaaggaagttcatagaacactctcaagtttgaa |
32342783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1437 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold1437
Description:
Target: scaffold1437; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 544 - 761
Alignment:
| Q |
18 |
atctatctcttagcaattacaccttttgtc-caattgaacacttgaagttaattcacattaagaatggcaagttctcgcattgcaagatttttcatggag |
116 |
Q |
| |
|
||||||||||||| ||||||| |||| | |||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
544 |
atctatctcttagtgattacacatttttccgcaattgaacacttgaaattagttcacattaagaatgacaagttctcgcgttgcaaggtttttcatggag |
643 |
T |
|
| Q |
117 |
gtggcaccaccacaatatgtctctgttatgaggcatagagcatcaaatatgatggaaacaattactgaagaggatagggaaattagctcacatgatagtc |
216 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||| | | |
|
|
| T |
644 |
gtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaagatgatggaaacaattgctgaagaggatagggaaattaactcacatgacaatg |
743 |
T |
|
| Q |
217 |
taatttcactacctaaaa |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
744 |
taatttcactacctaaaa |
761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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