View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4411_high_18 (Length: 362)
Name: NF4411_high_18
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_high_18 |
 | |
|
| [»] chr1 (8 HSPs) |
| |
|
| [»] chr5 (9 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr4 (6 HSPs) |
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| [»] chr2 (9 HSPs) |
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| [»] chr8 (3 HSPs) |
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|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 22 - 362
Target Start/End: Original strand, 34118009 - 34118350
Alignment:
| Q |
22 |
caacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgccacgtatgttgc |
121 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
34118009 |
caacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctatgttgc |
34118108 |
T |
|
| Q |
122 |
gagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagcatccaacgacac |
221 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34118109 |
gagcaaacataacctctaccacacaaccaatagagaaaacaaatcaaataatctgagatccacgaaaactaaacaaccaccggcaagcatccaacgacac |
34118208 |
T |
|
| Q |
222 |
accatgaaatccaccaacgtctcaaccagacgaaac-nnnnnnnnncaccaaaaacacaaaccaacctttacgatgagagagcaactgcacgtcggaaag |
320 |
Q |
| |
|
||||||||| ||||||||||||| |||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34118209 |
accatgaaacccaccaacgtctcgaccaaacaaaacaaaaaaaaaacaccaaaaacacaaaccaacctttacgatgagagagcaactgcacgtcgaaaag |
34118308 |
T |
|
| Q |
321 |
gtacagtggtgcggaggacagagacccaagtcgcacgaccat |
362 |
Q |
| |
|
|||| ||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
34118309 |
gtacggtggtgcagaggacagagaccctcgtcgcaccaccat |
34118350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 293
Target Start/End: Original strand, 34655070 - 34655261
Alignment:
| Q |
100 |
gatccatcgccacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaacc |
199 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||| ||||| || | |||||||||||||| |||||||||||||||||| |||||| | |
|
|
| T |
34655070 |
gatccatcaccacctatgttgcgagcaaacataacctccaccaca--accaaaagagaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaac |
34655167 |
T |
|
| Q |
200 |
accggcaagcatccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaacnnnnnnnnncaccaaaaacacaaaccaacctttacg |
293 |
Q |
| |
|
||||| |||||||||||||||||||| |||| | |||||| ||||||| | ||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
34655168 |
accggaaagcatccaacgacacaccacgaaaccaaccaacatctcaactaaacgaaacaaaaaaaaacacgaaaaacgcaaaccaacctttacg |
34655261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 347
Target Start/End: Original strand, 615823 - 616065
Alignment:
| Q |
103 |
ccatcgccacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccacc |
202 |
Q |
| |
|
||||| |||| |||||||||| ||||||||| |||||||||| ||||| || | |||| ||||||||| | || ||| ||||| ||||||||||| |
|
|
| T |
615823 |
ccatcaccacctatgttgcgatcaaacataatctccaccaca--accaagagagaaaacgaatcaaatagt---agctccaataaaaccaaacaaccacc |
615917 |
T |
|
| Q |
203 |
ggcaagcatccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaacnnnnnnnnncaccaaaaacacaaaccaacctttacga----tgag |
298 |
Q |
| |
|
| |||||||||||||||||||| |||| ||||||||||| |||||| |||||| ||||||||| |||||||||||||||||| ||| |
|
|
| T |
615918 |
gagaagcatccaacgacacaccacgaaacccaccaacgtcccaaccaagcgaaacaaacaaaa-caccaaaaatacaaaccaacctttacgacgacagag |
616016 |
T |
|
| Q |
299 |
agagcaactgcacgtcggaaaggtacagtggtgcggaggacagagaccc |
347 |
Q |
| |
|
|||||||| | || |||||||||||| |||||||||||||||||||||| |
|
|
| T |
616017 |
agagcaaccgtacatcggaaaggtacggtggtgcggaggacagagaccc |
616065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 11408035 - 11407951
Alignment:
| Q |
57 |
tcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgccacgtatgttgcgagcaaacataacctccacc |
141 |
Q |
| |
|
|||||||| |||| | || ||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
11408035 |
tcataagctaacccatatctgatccatcaccaccttcgtggccgatccatcaccacttatgttgcgagcaaacataacctccacc |
11407951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 99 - 225
Target Start/End: Complemental strand, 39709029 - 39708906
Alignment:
| Q |
99 |
cgatccatcgccacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaac |
198 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||||||||||||| ||||||||| || | |||| ||||||||| | |||||||| |||||| ||||||| |
|
|
| T |
39709029 |
cgatccatcaccacctatattgcgagcaaacataacctccac--cacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaac |
39708933 |
T |
|
| Q |
199 |
caccggcaagcatccaacgacacacca |
225 |
Q |
| |
|
||||| |||||||| ||| |||||||| |
|
|
| T |
39708932 |
caccgacaagcatctaacaacacacca |
39708906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 34655003 - 34655083
Alignment:
| Q |
10 |
agcagcacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccacc |
90 |
Q |
| |
|
|||| |||| |||||||||| ||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34655003 |
agcaccacaaaccaacacaatcaaagatgcatcaaaaccataacatttcataagcgaacctagatatgatccatcaccacc |
34655083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 39709095 - 39709015
Alignment:
| Q |
10 |
agcagcacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccacc |
90 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||||||||| |||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
39709095 |
agcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagatacgatccatcaccacc |
39709015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 347
Target Start/End: Complemental strand, 39708687 - 39708637
Alignment:
| Q |
297 |
agagagcaactgcacgtcggaaaggtacagtggtgcggaggacagagaccc |
347 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
39708687 |
agagagcaaccgtacgtcggaaaggtacggtggtgcggaggacaaagaccc |
39708637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 362
Target Start/End: Complemental strand, 7767102 - 7766749
Alignment:
| Q |
10 |
agcagcacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgc |
109 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||| ||| | |
|
|
| T |
7767102 |
agcaccacaaaccaacacaaccaaagatccatcgaaaccataacaattcataagtgaacctagatatgatccatcaccaccattgtggccgatcaatcac |
7767003 |
T |
|
| Q |
110 |
cacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagc |
209 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||| || | |||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7767002 |
cacctatgttgcgagcaaacataacctcca--tcacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaccaccggcaagc |
7766905 |
T |
|
| Q |
210 |
atccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaacnnnnnnnnncaccaaaaacacaaaccaacctttacga----tgagagagcaa |
305 |
Q |
| |
|
|||||||||||||||| |||| |||| | |||||||| || ||||||| |||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
7766904 |
atccaacgacacaccacgaaacccactagcgtctcaatcaaacgaaac-aaaaaaaacaccaaaaacacaaaccaacctttacgacgacagagcgagcaa |
7766806 |
T |
|
| Q |
306 |
ctgcacgtcggaaaggtacagtggtgcggaggacagagacccaagtcgcacgaccat |
362 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
7766805 |
ccatacgtcggaaaggtacggtggtgcggaggacaaagaccctcgtcgcaccaccat |
7766749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 18696958 - 18697304
Alignment:
| Q |
10 |
agcagcacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgc |
109 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| | |
|
|
| T |
18696958 |
agcaccacaaaccaacacaaccaaagatccaccgaacccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgactgatccatcac |
18697057 |
T |
|
| Q |
110 |
cacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagc |
209 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||| |
|
|
| T |
18697058 |
cacctatgttgcgggcaaacataacctccaccacacaaccaatataaaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaccaccgacaatt |
18697157 |
T |
|
| Q |
210 |
atccaacgacacaccatgaaatccaccaacgtctcaaccagacg-aaacnnnnnnnnncaccaaaaacacaaaccaacctttacgatg--agagagcaac |
306 |
Q |
| |
|
|||||||||||||||| |||| | |||||||| ||| ||| ||||||||||| ||| |||||||||||| | | |||||||| |
|
|
| T |
18697158 |
atccaacgacacaccacgaaacc---------ctcaaccaaacgaaaaaagaaaaaaacaccaaaaacataaatcaacctttacgacgacaaagagcaac |
18697248 |
T |
|
| Q |
307 |
tgcacgtcggaaaggtacagtggtgcggaggacagagacccaagtcgcacgaccat |
362 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
18697249 |
cgcacgtcggaaatgtacggtggtgcggaggacagagaccctcgtcgcaccaccat |
18697304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 27170186 - 27169948
Alignment:
| Q |
10 |
agcagcacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgc |
109 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| ||||||||| |||| |||| || | | ||||||||||| |||||||||||| |||||||||| | |
|
|
| T |
27170186 |
agcaccacaaaccaacacaaccaaagatccatcgaaaccataacagttcgtaagtaaagccaaatatgatccattaccaccatcgtgaccgatccatcac |
27170087 |
T |
|
| Q |
110 |
cacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaa-caaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaag |
208 |
Q |
| |
|
||| || |||||||||||||||||||||||||||| ||||| || | ||| | ||||||||| ||||||||||||||||| ||||||||| ||| ||| |
|
|
| T |
27170086 |
cacttacgttgcgagcaaacataacctccaccaca--accaagagagaaaaacgaatcaaatagcctgagacccacgaaaaccaaacaaccatcggaaag |
27169989 |
T |
|
| Q |
209 |
catccaacgacacaccatgaaatccaccaacgtctcaacca |
249 |
Q |
| |
|
|||||| | |||||||| |||| ||||||||||| |||||| |
|
|
| T |
27169988 |
catccagcaacacaccacgaaacccaccaacgtcccaacca |
27169948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 100 - 362
Target Start/End: Complemental strand, 41355553 - 41355290
Alignment:
| Q |
100 |
gatccatcgccacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaacc |
199 |
Q |
| |
|
|||||||| || | ||||||||||||||| ||||||||||||||| ||||| || | |||||||||||||| || ||| ||||| |||| |||||||| |
|
|
| T |
41355553 |
gatccatcaccgcctatgttgcgagcaaatataacctccaccaca--accaagagagaaaacaaatcaaatagcctaagatccacggaaactaaacaacc |
41355456 |
T |
|
| Q |
200 |
accggcaagcatccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaac-nnnnnnnnncaccaaaaacacaaaccaacctttacgatg-- |
296 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||| ||| | ||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
41355455 |
accggcaagcatccaacgacacaccacaaaacccaccaacgtctcagccaaatgaaacgaataaaaaacaccaaaaacacaaaccaacatttacgacgaa |
41355356 |
T |
|
| Q |
297 |
agagagcaactgcacgtcggaaaggtacagtggtgcggaggacagagacccaagtcgcacgaccat |
362 |
Q |
| |
|
|||||||||| | |||||||||||||| |||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
41355355 |
agagagcaaccacgcgtcggaaaggtacgatggtgcggaggacaaagaccctcgtcgcaccaccat |
41355290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 347
Target Start/End: Original strand, 7271893 - 7272134
Alignment:
| Q |
104 |
catcgccacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccg |
203 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||| ||||| || | |||| ||||||||| | || |||| ||||| |||||||||| | |
|
|
| T |
7271893 |
catcaccacctatgttgcgagcaaacataacctccaccaca--accaagagagaaaacgaatcaaatagt---agccccaataaaaccaaacaaccactg |
7271987 |
T |
|
| Q |
204 |
gcaagcatccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaacnnnnnnnnncaccaaaaacacaaaccaacctttacga----tgaga |
299 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
7271988 |
acaagcatccaacgacacataaagaaacccaccaacgtccaaaccaagcgaaacaaaaaaaa-caccaaaaacacaaaccaacctttacgacgacagaga |
7272086 |
T |
|
| Q |
300 |
gagcaactgcacgtcggaaaggtacagtggtgcggaggacagagaccc |
347 |
Q |
| |
|
||||||| | | ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7272087 |
gagcaaccgtatgtcggaaaggtacggtggtgcggaggacagagaccc |
7272134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 347
Target Start/End: Complemental strand, 6030313 - 6030149
Alignment:
| Q |
186 |
aaaacaaaacaaccaccggcaagcatccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaacnnnnnnnnncaccaaaaacacaaaccaa |
285 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||| |||| ||||||||||| |||||| || ||| |||||||||||||||||| |
|
|
| T |
6030313 |
aaaaccaaacaaccaccgagaagcatccaacgacacaccacgaaacccaccaacgtcccaaccaagcg-aaccaaacaaaataccaaaaacacaaaccaa |
6030215 |
T |
|
| Q |
286 |
cctttacgat----gagagagcaactgcacgtcggaaaggtacagtggtgcggaggacagagaccc |
347 |
Q |
| |
|
|||||||||| ||||||| ||| ||||| |||||| || |||||||| ||||||||||||| |
|
|
| T |
6030214 |
cctttacgatgacagagagagaaaccttacgtcagaaaggcacggtggtgcgaaggacagagaccc |
6030149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 346
Target Start/End: Original strand, 26656827 - 26657068
Alignment:
| Q |
103 |
ccatcgccacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccacc |
202 |
Q |
| |
|
||||| |||| ||| ||||||||||||||||||| ||| ||| ||||| || | |||| ||||||||| | || |||| |||| ||||||| ||| |
|
|
| T |
26656827 |
ccatcaccacttatattgcgagcaaacataaccttcacaaca--accaagagagaaaacgaatcaaatagt---agccccaataaaatcaaacaacaacc |
26656921 |
T |
|
| Q |
203 |
ggcaagcatccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaacnnnnnnnnn-caccaaaaacacaaaccaacctttacgatga--ga |
299 |
Q |
| |
|
| |||||||||||||||||| || | || ||||||| ||| |||||| |||||| || |||||||||||||||||||| |||| | || |
|
|
| T |
26656922 |
gacaagcatccaacgacacatcaaggaacccaccaatgtcccaaccaaacgaaaagaaaaaaaaacagcaaaaacacaaaccaaccttaacgagaataga |
26657021 |
T |
|
| Q |
300 |
gagcaactgcacgtcggaaaggtacagtggtgcggaggacagagacc |
346 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26657022 |
gagcagtcgtacgtcggaaaggtacagtggtgcggaggacaaagacc |
26657068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 346
Target Start/End: Original strand, 26928414 - 26928656
Alignment:
| Q |
103 |
ccatcgccacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccacc |
202 |
Q |
| |
|
||||| |||| ||| ||||||||||||||||||| ||| ||| ||||| || | |||| ||||||||| | || |||| |||| ||||||| ||| |
|
|
| T |
26928414 |
ccatcaccacttatattgcgagcaaacataaccttcacaaca--accaagagagaaaacgaatcaaatagt---agccccaataaaatcaaacaacaacc |
26928508 |
T |
|
| Q |
203 |
ggcaagcatccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaacnnnnnnnnncac--caaaaacacaaaccaacctttacgatga--g |
298 |
Q |
| |
|
| |||||||||||||||||| || | || ||||||| ||| |||||| |||||| || |||||||||||||||||||| |||| | | |
|
|
| T |
26928509 |
gacaagcatccaacgacacatcaaggaacccaccaatgtcccaaccaaacgaaaagaaaaaaaaaacagcaaaaacacaaaccaaccttaacgagaatag |
26928608 |
T |
|
| Q |
299 |
agagcaactgcacgtcggaaaggtacagtggtgcggaggacagagacc |
346 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26928609 |
agagcagtcgtacgtcggaaaggtacagtggtgcggaggacaaagacc |
26928656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 41355615 - 41355543
Alignment:
| Q |
15 |
cacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcacc |
87 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
41355615 |
cacaaaccaacacaaccaaagatccatcgaaaccatataagttcatgagcgaacatagatatgatccatcacc |
41355543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 21881492 - 21881846
Alignment:
| Q |
10 |
agcagcacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgc |
109 |
Q |
| |
|
|||| |||| ||||||| |||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
21881492 |
agcaccacaaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcac |
21881591 |
T |
|
| Q |
110 |
cacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagc |
209 |
Q |
| |
|
||| | ||||||||||||||||||||||| | |||| |||| || | |||| ||||||||| ||||||| |||||||||| ||||||| |||| ||||| |
|
|
| T |
21881592 |
cacctttgttgcgagcaaacataacctccgc--cacagccaagagagaaaacgaatcaaatagtctgagagccacgaaaaccaaacaacgaccgacaagc |
21881689 |
T |
|
| Q |
210 |
atccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaacnnnnnnnnncaccaaaaacacaaaccaacctttacga----tgagagagcaa |
305 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21881690 |
atccaacgacacaccacaaaatccaccaatgtcccaaccaaacgaaacaaaaaaaaacaccaaaaacacaaaccaacctttacgacgaccgagagagcaa |
21881789 |
T |
|
| Q |
306 |
ctgcacgtcggaaaggtacagtggtgcggaggacagagacccaagtcgcacgaccat |
362 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
21881790 |
ctgtacgtcggaaaggtacggtggtgcggaggacatagaccctcgtcgcaccaccat |
21881846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 20740613 - 20740965
Alignment:
| Q |
20 |
accaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgccacgtatgtt |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||||||| |||| |||||| |
|
|
| T |
20740613 |
accaacacaaccaaagatccatcgaaaccatataagttcataaccgaacctagatatgatccatcaccaccatcgtgaccaatccatcaccacctatgtt |
20740712 |
T |
|
| Q |
120 |
gcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagcatccaacgac |
219 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| || | |||||||||||||| | |||||||||||||||| |||||| || |||||||||||||||| |
|
|
| T |
20740713 |
gcgagcaaacataacatccac--cacaaccaagagagaaaacaaatcaaatagtttgagacccacgaaaaccaaacaataacatgcaagcatccaacgac |
20740810 |
T |
|
| Q |
220 |
acaccatgaaatccaccaacgtctc----------aaccagacgaaac-nnnnnnnnncaccaaaaacacaaaccaacctttacgatg--agagagcaac |
306 |
Q |
| |
|
|| ||| ||| ||||||||||||| | ||| ||||||| ||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
20740811 |
ac-ccacaaaacccaccaacgtctcagccaaatgaagccaaacgaaacaaataaaaaacaccaaaaacacaaatcaacctttacgatgacagagagcaac |
20740909 |
T |
|
| Q |
307 |
tgcacgtcggaaaggtacagtggtgcggaggacagagacccaagtcgcacgaccat |
362 |
Q |
| |
|
|| ||||||||||||| |||||||| |||| |||||||| ||||||| ||||| |
|
|
| T |
20740910 |
cgcctgtcggaaaggtacggtggtgcgaaggatagagaccctcgtcgcaccaccat |
20740965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 53202296 - 53202644
Alignment:
| Q |
15 |
cacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgccacgt |
114 |
Q |
| |
|
|||| ||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||||||||||| |||||| || |||| | |
|
|
| T |
53202296 |
cacaaaccaatacaaccaaagatccatcgaaaccatataagttcataagcgaatctagatatgattcatcaccaccatcgtgaccgatctgtcaccacct |
53202395 |
T |
|
| Q |
115 |
atgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagcatcca |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| || | |||||||||||||| | |||||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
53202396 |
atgttgcgagcaaacataacctccac--cacaaccaagagagaaaacaaatcaaatagtttgagacccacgaaaaccaaacaaccacagacaagcatcca |
53202493 |
T |
|
| Q |
215 |
acgacacaccatgaaatccaccaacgtctcaaccagacgaaac-nnnnnnnnncaccaaaaacacaaaccaacctttacgatg--agagagcaactgcac |
311 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||| ||||||| || |||||| |||||||||||||||||| | |||||||||| |||| |
|
|
| T |
53202494 |
acgacacaccacaaaacccaccaacgtctcagccaaacgaaacaaataaaaaacatcaaaaatacaaaccaacctttacgacgatagagagcaaccgcac |
53202593 |
T |
|
| Q |
312 |
gtcggaaaggtacagtggtgcggaggacagagacccaagtcgcacgaccat |
362 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
53202594 |
gtcggaaaggtacggtggtgcggaggacagtgaccctcgtcgcaccaccat |
53202644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 23 - 347
Target Start/End: Complemental strand, 47518535 - 47518210
Alignment:
| Q |
23 |
aacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgccacgtatgttgcg |
122 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||| ||| | |||||||| |||| ||||||||| |
|
|
| T |
47518535 |
aacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgattcatcaccaccattgtgactgatccatcaccacctatgttgcg |
47518436 |
T |
|
| Q |
123 |
agcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagcatccaacgacaca |
222 |
Q |
| |
|
|||||||||||||||||||||| || | || | |||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
47518435 |
agcaaacataacctccaccaca--acatagagagaaaacaaatcaaatagtctgagacccatgaaaaccaaacaaccaccgacaagcatccaacgacaca |
47518338 |
T |
|
| Q |
223 |
ccatgaaatccaccaacgtctcaaccagacgaaac-nnnnnnnnncaccaaaaacacaaaccaacctttacgatg--agagagcaactgcacgtcggaaa |
319 |
Q |
| |
|
||| ||||| |||||||||||| ||| | ||||| |||||||||||||||||||||||||||| | | |||| ||| |||||||||||| |
|
|
| T |
47518337 |
ccacaaaatctaccaacgtctcagccaaatgaaacaaataaaaaacaccaaaaacacaaaccaacctttacgacgacaaagagaaaccgcacgtcggaaa |
47518238 |
T |
|
| Q |
320 |
ggtacagtggtgcggaggacagagaccc |
347 |
Q |
| |
|
|||| ||||||||||||||| |||||| |
|
|
| T |
47518237 |
ggtattgtggtgcggaggacaaagaccc |
47518210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 23054320 - 23054086
Alignment:
| Q |
20 |
accaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgccacgtatgtt |
119 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||| ||| ||||||||| | |||||||| |||| |||||| |
|
|
| T |
23054320 |
accaacacaaccaaagatccattgaaaccataacagttcataagcgaaccgagatatgatccagcac-accatcgtgactgatccatcaccacctatgtt |
23054222 |
T |
|
| Q |
120 |
gcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagcatccaacgac |
219 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || | |||||||||||||| ||| |||||||||||||| |||||||||| | |||||||||| | || |
|
|
| T |
23054221 |
gcgagcaaacataacctccaccaca--accaagagagaaaacaaatcaaatagtctcagacccacgaaaaccaaacaaccactgacaagcatccagcaac |
23054124 |
T |
|
| Q |
220 |
acaccatgaaatccaccaacgtctcaaccagacgaaac |
257 |
Q |
| |
|
|| ||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
23054123 |
acgccacaaaacccaccaacgtctcaaccaaacgaaac |
23054086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 6410016 - 6410145
Alignment:
| Q |
10 |
agcagcacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgc |
109 |
Q |
| |
|
|||| |||| |||||||||||| ||||| || |||||||||| | |||||||||||| |||| ||||| ||| ||||| ||||| |||||||||| | |
|
|
| T |
6410016 |
agcaccacaaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgaccgatccatcac |
6410115 |
T |
|
| Q |
110 |
cacgtatgttgcgagcaaacataacctcca |
139 |
Q |
| |
|
||| ||| |||||||||||||||||||||| |
|
|
| T |
6410116 |
cacctattttgcgagcaaacataacctcca |
6410145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 24957635 - 24957572
Alignment:
| Q |
78 |
atccatcaccaccatcgtggccgatccatcgccacgtatgttgcgagcaaacataacctccacc |
141 |
Q |
| |
|
||||||| |||| ||||| ||||| |||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
24957635 |
atccatcgtcaccttcgtgaccgatacatcaccacctatgttgcgagcaaacataacctccacc |
24957572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 34227110 - 34227057
Alignment:
| Q |
15 |
cacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaac |
68 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
34227110 |
cacagaccaacacaaccaaagatccattgaaaccatataagttcataagcgaac |
34227057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 17375302 - 17375651
Alignment:
| Q |
10 |
agcagcacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgc |
109 |
Q |
| |
|
|||| |||| |||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
17375302 |
agcaccacaaaccaacacaaccaaagattcatcgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgatcgatccatcac |
17375401 |
T |
|
| Q |
110 |
cacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagc |
209 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| |||||||||||| | |||| ||||||||| | ||||| |||||||||| |||||||||||| || || |
|
|
| T |
17375402 |
cacctatgttgtgagcaaacataacctccac--cacaaccaatagagaaaacgaatcaaatagtgtgagagccacgaaaaccaaacaaccaccgacaggc |
17375499 |
T |
|
| Q |
210 |
atccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaacnnnnnnnnncaccaaaaacacaaaccaacctttacgatg-----agagagca |
304 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||| |||||| ||||||||||| || ||||||||| | |||||||| |
|
|
| T |
17375500 |
atccaacgacacaccacgaaacccaccaacgtctcaaccaaacgaaaaaaaataa------aaaaacacaaatcagcctttacgacgaacaaagagagca |
17375593 |
T |
|
| Q |
305 |
actgcacgtcggaaaggtacagtggtgcggaggacagagacccaagtcgcacgaccat |
362 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
17375594 |
actacacgtcggaaaggtacagaggtgcggaggacatagaccctcgtcgcaccaccat |
17375651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 323
Target Start/End: Original strand, 1895440 - 1895749
Alignment:
| Q |
15 |
cacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgccacgt |
114 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| || |||||| ||| |||| | |
|
|
| T |
1895440 |
cacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgactcatcaccaccatcatgaccgatcaatcaccacct |
1895539 |
T |
|
| Q |
115 |
atgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagcatcca |
214 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||| || | ||| |||||||||| |||||||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
1895540 |
atgttgcgagcagacataacctccac--cacaaccaagagagaaaagaaatcaaatagtctgagacccacaaaaaccaaacaaccaccgacaagcatcca |
1895637 |
T |
|
| Q |
215 |
acgacacaccatgaaatccaccaacgtctcaaccagacgaaac-nnnnnnnnncaccaaaaacacaaaccaacctttacgatg--agagagcaactgcac |
311 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
1895638 |
acgacacaccacaaaatccaccaacgtctcagccaaacgaaacaaataaaaaacaccaaaaacacaaaccaacctttacgacgatagagagcaaccgcac |
1895737 |
T |
|
| Q |
312 |
gtcggaaaggta |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1895738 |
gtcggaaaggta |
1895749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 20 - 362
Target Start/End: Complemental strand, 17282031 - 17281690
Alignment:
| Q |
20 |
accaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgccacgtatgtt |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| ||| | |||||||| |||| |||||| |
|
|
| T |
17282031 |
accaacacaaccaaagatccatcgaaaccatataagttcataagcaaacctagatatgatccatcaccaccattgtgactgatccatcaccacctatgtt |
17281932 |
T |
|
| Q |
120 |
gcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagcatccaacgac |
219 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| || | |||||||||||||| ||||||||| ||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
17281931 |
gcgagcaaacataacctccac--cactaccaagagagaaaacaaatcaaatagtctgagacctacgaaaaacaaacaaccaccggaaagcat-caacgat |
17281835 |
T |
|
| Q |
220 |
acaccatgaaatccaccaacgtctcaaccagacgaaac-nnnnnnnnncaccaaaaacacaaaccaacctttacgatg--agagagcaactgcacgtcgg |
316 |
Q |
| |
|
|||||| ||| |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| | | |||||||| ||||||||| |
|
|
| T |
17281834 |
acaccacaaaacccaccaacgtctcagccaaacgaaacaaataaaaaacaccaaaaacacaaaccaacctttacgacgacatagagcaaccgcacgtcgg |
17281735 |
T |
|
| Q |
317 |
aaaggtacagtggtgcggaggacagagacccaagtcgcacgaccat |
362 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||| ||||| |
|
|
| T |
17281734 |
aaaggtacgacggtg-tgaggacagagaccctcgtcgcaccaccat |
17281690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 362
Target Start/End: Complemental strand, 1551690 - 1551334
Alignment:
| Q |
15 |
cacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgccacgt |
114 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||| ||||||||||||||||| | |||||||||||||||||||||| | |||||||| |||| | |
|
|
| T |
1551690 |
cacaaaccaacacaaccaaagatccatcgaaactatataagttcataagcgaacctatacatgatccatcaccaccatcgtgactgatccatcaccacct |
1551591 |
T |
|
| Q |
115 |
atgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagcatcca |
214 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| ||||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
1551590 |
atgttgcgagcaaacataacatccac--cacaaccaatagagaaaacaaatcaaatagtctgagacccacgaaaatcaaacaattacaggcaagcatcca |
1551493 |
T |
|
| Q |
215 |
acgacacaccatgaaatccaccaacgtctc----------aaccagacgaaac-nnnnnnnnncaccaaaaacacaaaccaacctttacgatga--gaga |
301 |
Q |
| |
|
|||||| ||| ||| ||||||||||||| | ||| ||||||| |||| ||||||||||||||||||||||| || |||| |
|
|
| T |
1551492 |
acgaca-tccacaaaacccaccaacgtctcagccaaatgaagccaaacgaaacaaataaaaaacacc-aaaacacaaaccaacctttacgacgacggaga |
1551395 |
T |
|
| Q |
302 |
gcaactgcacgtcggaaaggtacagtggtgcggaggacagagacccaagtcgcacgaccat |
362 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||| |||||| ||||||| ||||| |
|
|
| T |
1551394 |
gcaaccgcacgtcggaaaggtacggtggtgcgaaggacaaagaccctcgtcgcaccaccat |
1551334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 166 - 347
Target Start/End: Original strand, 4140576 - 4140759
Alignment:
| Q |
166 |
caaataatctgagacccacgaaaacaaaacaaccaccggcaagcatccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaac-nnnnnnn |
264 |
Q |
| |
|
|||||| |||||||||||||||||| ||| |||||||||||||||| |||||| |||||| ||| |||||||||||||| ||| ||||||| |
|
|
| T |
4140576 |
caaatagtctgagacccacgaaaaccaaagaaccaccggcaagcat-caacgatacaccacaaaacccaccaacgtctcagccaaacgaaacaaataaaa |
4140674 |
T |
|
| Q |
265 |
nncaccaaaaacacaaaccaacctttacgatg--agagagcaactgcacgtcggaaaggtacagtggtgcggaggacagagaccc |
347 |
Q |
| |
|
||||||||||||||| |||||||||||| | | |||||||| |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
4140675 |
aacaccaaaaacacaaatcaacctttacgacgacatagagcaaccgcacgttagaaaggtacaacagtgcggaggacagagaccc |
4140759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 347
Target Start/End: Original strand, 4869785 - 4869949
Alignment:
| Q |
186 |
aaaacaaaacaaccaccggcaagcatccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaacnnnnnnnnncaccaaaaacacaaaccaa |
285 |
Q |
| |
|
||||| |||||||||||| |||||||||||| ||||||| |||| |||||||||| ||||| |||| | ||||||||||||||||||| |
|
|
| T |
4869785 |
aaaaccaaacaaccaccgagaagcatccaacgtcacaccacgaaacgcaccaacgtcctaaccaagcgaa-ccaaacaaaacaccaaaaacacaaaccaa |
4869883 |
T |
|
| Q |
286 |
cctttacgat----gagagagcaactgcacgtcggaaaggtacagtggtgcggaggacagagaccc |
347 |
Q |
| |
|
|||||||||| ||||||| ||| | |||||||||||| || |||||||||||||||||||||| |
|
|
| T |
4869884 |
cctttacgatgacagagagagaaaccgtacgtcggaaaggcacggtggtgcggaggacagagaccc |
4869949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 3921622 - 3921697
Alignment:
| Q |
15 |
cacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccacc |
90 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3921622 |
cacaaaccaacacaaccaaacatccatcaaaaccatataagttcataagcgaacttagatatgatccatcaccacc |
3921697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 347
Target Start/End: Original strand, 34660395 - 34660554
Alignment:
| Q |
186 |
aaaacaaaacaaccaccggcaagcatccaacgacacaccatgaaatccaccaacgtctcaacc-agacgaaacnnnnnnnnncaccaaaaacacaaacca |
284 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||| || |||| |||||||||| ||||| || |||| |||||||||||||||||| |
|
|
| T |
34660395 |
aaaaccaaacaaccaccgacaagcatccaacgacacatcacgaaacccaccaacgttccaaccaagtggaaa----aaaaaacaccaaaaacacaaacca |
34660490 |
T |
|
| Q |
285 |
accttt--acgatgagagagcaactgcacgtcggaaaggtacagtggtgcggaggacagagaccc |
347 |
Q |
| |
|
|||||| ||||| ||||||||| | || ||||||||||| ||||||||||||||| |||||| |
|
|
| T |
34660491 |
acctttacacgat-agagagcaatcgtacatcggaaaggtatggtggtgcggaggacaaagaccc |
34660554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 3921684 - 3921728
Alignment:
| Q |
100 |
gatccatcgccacgtatgttgcgagcaaacataacctccaccaca |
144 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
3921684 |
gatccatcaccacctatgttgcgagcaaacataacatccaccaca |
3921728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 10408850 - 10409202
Alignment:
| Q |
10 |
agcagcacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgc |
109 |
Q |
| |
|
|||| |||| |||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| | |
|
|
| T |
10408850 |
agcaccacaaaccaacacaaccaaagattcatcgaaaccataacatatcataagcgaacctagatatgatccatcaccaccatcgtgaccgttccatcac |
10408949 |
T |
|
| Q |
110 |
cacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagc |
209 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||| || | || |||||||||| | |||||||||| ||||| ||| ||||||| ||||| |
|
|
| T |
10408950 |
cacctatgttgcgagcaaacataacctccac--cacaaccaagagagagaaaaaatcaaatagtttgagacccacaaaaaccaaataaccaccaacaagc |
10409047 |
T |
|
| Q |
210 |
atccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaacnnnnnnnnncaccaaaaacacaaaccaacctttacga----tgagagagcaa |
305 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
10409048 |
atccaacgacacaccacaaaacccaccaatgtctcaaccaaacgaaac--aaaaaaacaccaaaaacataaaccaacctttacgacaacagagagagcaa |
10409145 |
T |
|
| Q |
306 |
ctgcacgtcggaaaggtacagtggtgcggaggacagagacccaagtcgcacgaccat |
362 |
Q |
| |
|
| ||||||||||||| |||||||||| | ||||||||||||| ||||||| ||||| |
|
|
| T |
10409146 |
ccgcacgtcggaaagatacagtggtgagaaggacagagaccctcgtcgcaccaccat |
10409202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 5994655 - 5994900
Alignment:
| Q |
10 |
agcagcacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgc |
109 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
5994655 |
agcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcataagcgaacccagatatgatccatcaccaccatcatgatcgatccattag |
5994754 |
T |
|
| Q |
110 |
cacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagc |
209 |
Q |
| |
|
||| ||||||||||||||||||||| |||| | ||||||||| || | |||||||||||| | | |||| ||||||||||| |||||| ||||||||| | |
|
|
| T |
5994755 |
cac-tatgttgcgagcaaacataacatccatc-cacaaccaagagagaaaacaaatcaaacagtttgaggcccacgaaaaccaaacaatcaccggcaacc |
5994852 |
T |
|
| Q |
210 |
atccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaac |
257 |
Q |
| |
|
||||||| |||||||| | | ||||||||||| |||||| ||||||| |
|
|
| T |
5994853 |
atccaacaacacaccacgtacaccaccaacgtcccaaccaaacgaaac |
5994900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 6444065 - 6444189
Alignment:
| Q |
15 |
cacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgccacgt |
114 |
Q |
| |
|
|||| |||||||||| ||||||| | ||||||||| | ||||| |||||| | || ||||||||||||||| | ||| || |||||| |||| | |
|
|
| T |
6444065 |
cacaaaccaacacaatcaaagattcttcgaaaccataacagctcataggcgaactcatatctgatccatcaccacctttgtgaccaatccataaccacct |
6444164 |
T |
|
| Q |
115 |
atgttgcgagcaaacataacctcca |
139 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
6444165 |
aagttgcgagcaaacataacctcca |
6444189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 3302600 - 3302938
Alignment:
| Q |
10 |
agcagcacagaccaacacaaccaaagatccactaaaaccataattgttcataagcgaacctagatatgatccatcaccaccatcgtggccgatccatcgc |
109 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||| |||| |||| ||| ||||||||| ||||||||||| ||||||||||||||| ||||| ||| | |
|
|
| T |
3302600 |
agcaccacataccaatacaaccaaagatccatcgaaactataacagttaataagcgaatctagatatgatgtatcaccaccatcgtgatcgatctatcac |
3302699 |
T |
|
| Q |
110 |
cacgtatgttgcgagcaaacataacctccaccacacaaccaataggggaaacaaatcaaataatctgagacccacgaaaacaaaacaaccaccggcaagc |
209 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||| |||||||||| ||||||||||| |||| |
|
|
| T |
3302700 |
cacctatgttgcgagcaaacataacctccac--cacaaccaagagaggaaatgaatcaaatagtctgagatccacgaaaaccaaacaaccaccactaagc |
3302797 |
T |
|
| Q |
210 |
atccaacgacacaccatgaaatccaccaacgtctcaaccagacgaaacnnnnnnnnncaccaaaaacacaaaccaacctttacga----tgagagagcaa |
305 |
Q |
| |
|
|||||| ||||||||| |||| ||| ||||||| |||||| ||||||| |||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
3302798 |
atccaatgacacaccacgaaacccagcaacgtcacaaccaaacgaaac-aaaaaaaacaccaaaaacacaaaccaacctttacgacaacagagagcgcaa |
3302896 |
T |
|
| Q |
306 |
ctgcacgtcggaaaggtacagtggtgcggaggacagagaccc |
347 |
Q |
| |
|
| | ||||||||||||||| ||| ||| |||| ||||||||| |
|
|
| T |
3302897 |
ccgaacgtcggaaaggtacggtgatgcagagggcagagaccc |
3302938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 18269659 - 18269608
Alignment:
| Q |
296 |
gagagagcaactgcacgtcggaaaggtacagtggtgcggaggacagagaccc |
347 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18269659 |
gagagagcaaccgtacgtcggaaaggtacggtggtgcggaggacagagaccc |
18269608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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