View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_high_20 (Length: 338)
Name: NF4411_high_20
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 32016940 - 32017246
Alignment:
| Q |
18 |
aagtagatgctgaaagggttttggttagtttggcacgcaattatttgggtgatatggaaagctagaaatgcaaagatatttgagaatcattcaaaagatg |
117 |
Q |
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| T |
32016940 |
aagtagatgcggaaagggttttggttagtttggcacgcaattatttgggtgatatggaaagctagaaatgcaaagatatttgagaatcattcaaaagatg |
32017039 |
T |
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| Q |
118 |
tggaggagatggtggaagagatcaaggtgttgtcttggagatggatgttgatgagattgaaggttttgccttgcctattttactagtggaattgggatcc |
217 |
Q |
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| T |
32017040 |
tggaggagatggtggaagagatcaaggtgttgtcttggagatggatgttgatgagattgaaggttttgccttgcctattttacgagtggaattgggatcc |
32017139 |
T |
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| Q |
218 |
tgaagattgcttaagaaggtagtatttaaggggggagggtctgtgtttttcgagctgtgctctctgggttggttcacagcaggttttgttggtgttttcc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32017140 |
tgaagattgcttaagaaggtagtatttaaggggggagggtctgtgtttttcgagctgtgctctctgggttggttcacagcaggttttgttggttttttcc |
32017239 |
T |
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| Q |
318 |
cctatgc |
324 |
Q |
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| T |
32017240 |
cctatgc |
32017246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 919392 - 919435
Alignment:
| Q |
114 |
gatgtggaggagatggtggaagagatcaaggtgttgtcttggag |
157 |
Q |
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| T |
919392 |
gatgtggaagagatagtggaggagatcaaggtgttgtcttggag |
919435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 26397728 - 26397778
Alignment:
| Q |
117 |
gtggaggagatggtggaagagatcaaggtgttgtcttggagatggatgttg |
167 |
Q |
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| T |
26397728 |
gtggatgagatagtggaagagatcaaggtaatgtcttggcgatggatgttg |
26397778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 27185643 - 27185603
Alignment:
| Q |
117 |
gtggaggagatggtggaagagatcaaggtgttgtcttggag |
157 |
Q |
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| T |
27185643 |
gtggatgagatagtggaagagatcaaggggttgtcttggag |
27185603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 8453176 - 8453220
Alignment:
| Q |
124 |
agatggtggaagagatcaaggtgttgtcttggagatggatgttga |
168 |
Q |
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| T |
8453176 |
agattgtggaggaggtgaaggtgttgtcttggagatggatgttga |
8453220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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