View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_high_23 (Length: 286)
Name: NF4411_high_23
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 2047159 - 2047061
Alignment:
| Q |
1 |
caaattaacatctaagtaacaataatgaactaaattagaatcaaaaa-gccatcatcacaattactagtatctataaacaaatttattacctgagtagt |
98 |
Q |
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| T |
2047159 |
caaattaacatctaagtaacaataatgaactaaattagaatcaaaaaagccatcatcacaattactagtatctataaacaaatttattacctgagtagt |
2047061 |
T |
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Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 2046981 - 2046897
Alignment:
| Q |
178 |
ttaccatggaaactttgtgcaaaccataatttcttaacacctaaattttatagtaaaccaccaaattacttactaactttgtagg |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2046981 |
ttaccatggaaactttgtgcaaaccataatttcttaacacctaaattttatagtaaaccaccaaattagttactaactttgtagg |
2046897 |
T |
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