View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4411_high_30 (Length: 239)

Name: NF4411_high_30
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4411_high_30
NF4411_high_30
[»] chr3 (20 HSPs)
chr3 (12-221)||(10580253-10580462)
chr3 (16-221)||(9838513-9838718)
chr3 (16-221)||(9849391-9849596)
chr3 (16-227)||(8860932-8861143)
chr3 (16-221)||(10376057-10376262)
chr3 (12-221)||(10434252-10434461)
chr3 (16-221)||(10076918-10077126)
chr3 (16-221)||(10088442-10088647)
chr3 (16-221)||(10195325-10195530)
chr3 (12-221)||(11131234-11131443)
chr3 (16-221)||(10888958-10889163)
chr3 (12-221)||(11149062-11149271)
chr3 (16-221)||(11160229-11160434)
chr3 (16-221)||(11768886-11769091)
chr3 (16-183)||(10364010-10364177)
chr3 (16-221)||(13332556-13332761)
chr3 (16-213)||(13160640-13160837)
chr3 (16-221)||(13289317-13289522)
chr3 (16-221)||(13170683-13170888)
chr3 (16-213)||(13343749-13343946)
[»] chr2 (1 HSPs)
chr2 (16-221)||(26906549-26906754)
[»] chr8 (1 HSPs)
chr8 (16-218)||(44957921-44958123)
[»] scaffold0083 (1 HSPs)
scaffold0083 (16-221)||(50020-50222)
[»] chr6 (1 HSPs)
chr6 (16-206)||(31679945-31680135)
[»] scaffold0002 (2 HSPs)
scaffold0002 (16-213)||(146151-146348)
scaffold0002 (16-221)||(136100-136305)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 10580462 - 10580253
Alignment:
Q  12 cacagaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatg 111  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10580462 cacagaacttgaaggagttccatgagaaactctagcactcttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatg 10580363  T
Q  112 atcttcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctcca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10580362 atcttcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttgtgtattctcca 10580263  T
Q  212 ccttgcatcg 221  Q
    ||||||||||    
T  10580262 ccttgcatcg 10580253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 9838718 - 9838513
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||||||||| | ||||||||  | |||| | | ||||| | | |||||||||||||    
T  9838718 gaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcacacatgatct 9838619  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||||||||||||||||||| | || || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||    
T  9838618 tcatctgggaattgatctctttgtaaaaactattaaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccacctt 9838519  T
Q  216 gcatcg 221  Q
    ||||||    
T  9838518 gcatcg 9838513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 9849596 - 9849391
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||||||||| | ||||||||  | |||| | | ||||| | | |||||||||||||    
T  9849596 gaactagaaggtgttctacgagaaactctagcacttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcacacatgatct 9849497  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||||||||||||||||||| | || || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||    
T  9849496 tcatctgggaattgatctctttgtaaaaactattaaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccacctt 9849397  T
Q  216 gcatcg 221  Q
    ||||||    
T  9849396 gcatcg 9849391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 8861143 - 8860932
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||| |||||||| || || ||||||||||||||||||||| ||||||||| | ||| || | ||||| | | |||||||||||||    
T  8861143 gaacttgaaggggttctacgagaaactttaccaattttagtttgcaaaccaaggatatctttatgttgtgcgaaaatttgcaagctatcacacatgatct 8861044  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||| |||||||||    
T  8861043 tcatttgggaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttccacacctgattagttttgtttgcagcttgtgtatcctccacctt 8860944  T
Q  216 gcatcgtgatga 227  Q
    ||||||| ||||    
T  8860943 gcatcgtaatga 8860932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 10376057 - 10376262
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||| ||||||||||| ||||||||||||||| |||||| | ||||||||  | |||||| ||||||||| | |||||||||| ||    
T  10376057 gaacttgaaggtgttctacgagaaactctaccacttttagtttgcagaccaagtatatctttatactgtgcaaagaattgcaggctatcacacatgacct 10376156  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||| || |||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||||    
T  10376157 tcatttgagaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagttcaacacctgattagttttgttttgagcttttgcattctccacctt 10376256  T
Q  216 gcatcg 221  Q
    ||||||    
T  10376257 gcatcg 10376262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 10434252 - 10434461
Alignment:
Q  12 cacagaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatg 111  Q
    |||||||||||||||| ||||||||||||||||  ||||||| ||||||| |||||| | ||||||||  | |||||| | ||||| | |||||||||||    
T  10434252 cacagaacttgaaggatttctatgagaaactctcccacttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatg 10434351  T
Q  112 atcttcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctcca 211  Q
    |||||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||| |||||||| |||||||||||||    
T  10434352 atcttcatttgagaattgatctctctgtagaaactattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctcca 10434451  T
Q  212 ccttgcatcg 221  Q
    ||||| ||||    
T  10434452 ccttggatcg 10434461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 10077126 - 10076918
Alignment:
Q  16 gaacttgaaggagttctatgagaaa---ctctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatga 112  Q
    ||||||||||| |||||| ||||||   |||||||| |||||||||||| |||||| ||||||||||  | ||||||||||||||   ||||||||||||    
T  10077126 gaacttgaaggtgttctacgagaaattactctagcaattttagtttgcagaccaagtacatctttattctgtgcaaacaattgcaacctttcacacatga 10077027  T
Q  113 tcttcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccac 212  Q
    ||||| | || |||||||||||| | |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| |||||||||    
T  10077026 tcttcgtttgagaattgatctctttgtagaagctattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcttgtgcattctccac 10076927  T
Q  213 cttgcatcg 221  Q
    |||||||||    
T  10076926 cttgcatcg 10076918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 10088647 - 10088442
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    |||||||||||||||||||| ||||| || ||  |||||||||||| |||||| | ||||||||  | |||||||||||||| | |||||||||||||||    
T  10088647 gaacttgaaggagttctatgtgaaacccttgcgattttagtttgcagaccaagtatatctttattctgtgcaaacaattgcaagctttcacacatgatct 10088548  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||| || |||||||||||||| |||||||||||||||||||| ||||||||||||  |||||||| | |||| ||||||||||||| ||||||||||||    
T  10088547 tcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttcatcacctgataacttttgttttgagcttgtgcattctccacctt 10088448  T
Q  216 gcatcg 221  Q
    ||||||    
T  10088447 gcatcg 10088442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 10195530 - 10195325
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    |||||||||||||||||||| ||||| || ||  |||||||||||| |||||| | ||||||||  | |||||||||||||| | |||||||||||||||    
T  10195530 gaacttgaaggagttctatgtgaaacccttgcgtttttagtttgcagaccaagtatatctttattctgtgcaaacaattgcaagctttcacacatgatct 10195431  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||| || |||||||||||||| |||||||||||||||||||| ||||||||||||  |||||||| | |||| ||||||||||||| ||||||||||||    
T  10195430 tcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttcatcacctgataacttttgttttgagcttgtgcattctccacctt 10195331  T
Q  216 gcatcg 221  Q
    ||||||    
T  10195330 gcatcg 10195325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 11131234 - 11131443
Alignment:
Q  12 cacagaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatg 111  Q
    ||||||||| ||||| ||||||||  ||| |||||||||||||||||| |||||||||| |||||| |  | |||||| | ||||||||| |||||||||    
T  11131234 cacagaactagaaggtgttctatggaaaattctagcacttttagtttgtaaaccaaggatatctttgttttgtgcaaaaatttgcaggttgtcacacatg 11131333  T
Q  112 atcttcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctcca 211  Q
     |||| || |||||||||||||||| ||||| | | |||||||||||||||||||||||||| |||||||||||||| |||  |||||||||||||||||    
T  11131334 gtcttaatttgggaattgatctctccatagatgtttttaaaaggagaagaaaggaagttccagacctgattagttttgtttgcagcttgtgtattctcca 11131433  T
Q  212 ccttgcatcg 221  Q
    ||||||||||    
T  11131434 ccttgcatcg 11131443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 10889163 - 10888958
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||| |||||||| || || ||||||||||||||||||||| ||||||||| | |||||| | ||||| | | | |||||||||||    
T  10889163 gaacttgaaggggttctacgagaaactttaccaattttagtttgcaaaccaaggatatctttatgttgtgcaaaaagttgcaagctattacacatgatct 10889064  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||| ||||||||||||||||| |||||| | ||||||||||||||||||||| ||||||||||| ||||||| |||   | ||||||||||||||||||    
T  10889063 tcatttgggaattgatctctctgtagaaggtgttaaaaggagaagaaaggaagctccacacctgactagttttgtttgtggattgtgtattctccacctt 10888964  T
Q  216 gcatcg 221  Q
    ||||||    
T  10888963 gcatcg 10888958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 11149062 - 11149271
Alignment:
Q  12 cacagaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatg 111  Q
    ||||||||| ||||| ||||||||  ||| ||||||||||||||||||||||||||||| |||||| |  | |||||| | ||||||||| |||||||||    
T  11149062 cacagaactagaaggtgttctatggaaaattctagcacttttagtttgcaaaccaaggatatctttgttttgtgcaaaaatttgcaggttgtcacacatg 11149161  T
Q  112 atcttcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctcca 211  Q
     ||||||| ||||||||||||||||| |||| | | ||||||||||||||||||||| ||||||||||| ||||||| |||   | ||||||||||||||    
T  11149162 gtcttcatttgggaattgatctctctgtagatggtgttaaaaggagaagaaaggaagctccacacctgactagttttgtttgtggattgtgtattctcca 11149261  T
Q  212 ccttgcatcg 221  Q
    ||||||||||    
T  11149262 ccttgcatcg 11149271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 11160229 - 11160434
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||| |||||||| || || ||||| ||||||||||||||| ||||||||| | ||| || | ||||| | | |||||||||||||    
T  11160229 gaacttgaaggggttctacgagaaactttaccaattttactttgcaaaccaaggatatctttatgttgtgcgaaaagttgcaagctatcacacatgatct 11160328  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||| |||   | ||||||||||||||||||    
T  11160329 tcatttgggaattgatctctctatagaaggtgttaaaaggagaagaaaggaagctccacacctgactagttttgtttgtggattgtgtattctccacctt 11160428  T
Q  216 gcatcg 221  Q
    ||||||    
T  11160429 gcatcg 11160434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 11769091 - 11768886
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| |  | ||||||||  | |||||| | ||||||| |||||||||||||||    
T  11769091 gaacttgaaggtgttctacgagaaactctagcacttttagtttgcaaacctaatatatctttattttgtgcaaaaagttgcaggctttcacacatgatct 11768992  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||| |||||||||||||||| ||||| | | |||||||| || ||||| ||||||||||||||||||||||| |||  ||||||| | ||||||| |||    
T  11768991 tcatatgggaattgatctctccatagatgtttttaaaaggggatgaaagtaagttccacacctgattagttttgtttctagcttgtttcttctccatctt 11768892  T
Q  216 gcatcg 221  Q
    ||||||    
T  11768891 gcatcg 11768886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 10364010 - 10364177
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||| | ||||| || |  |||||||||||||||| ||| | ||||||    ||| ||||   ||||||| |||||||||||||||    
T  10364010 gaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaagtatatcttttctcttttcaaaatgttgcaggctttcacacatgatct 10364109  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgatta 183  Q
    |||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  10364110 tcatctgggaattgatctctctatagaagctattgaaaggagataaaaggaagttccacacctgatta 10364177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 13332761 - 13332556
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||| |||||||||| || ||   ||||||||| ||||| | |||| | || | |||||| | ||||||  ||| |||||| ||||    
T  13332761 gaacttgaaggcgttctaagagaaactctcgcgctcacagtttgcaagccaagaatatctctctgttgtgcaaaaagttgcagcctttgacacataatct 13332662  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||| || ||||||||||||| |||||   | ||||||||||| |||| || |||||| |||||||||||  | |||| ||||||| | |||||||||||    
T  13332661 tcatttgtgaattgatctctccatagagatttttaaaaggagacgaaaagaggttccaaacctgattagtcatgttttcagcttgtttcttctccacctt 13332562  T
Q  216 gcatcg 221  Q
     |||||    
T  13332561 acatcg 13332556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 13160837 - 13160640
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||  |||||||||| || ||   ||||||||| ||||||| |||| | || | |||||| | ||||||  ||| |||||| ||||    
T  13160837 gaacttgaaggcgttcttagagaaactctcgcgctcacagtttgcaagccaaggatatctctttgttgtgcaaaaagttgcagcctttgacacataatct 13160738  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacc 213  Q
    |||| || ||||||||||||| |||||   | ||||||||||| |||| || |||||| |||||||||||  | |||| ||||||| | |||||||||    
T  13160737 tcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgattagtcatgttttcagcttgtttcttctccacc 13160640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 13289522 - 13289317
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||| ||||||||||  | ||   ||||||||| ||||||| |||| | || | |||||| |  |||||  ||| |||||| ||||    
T  13289522 gaacttgaaggcgttctaagagaaactctccctctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagctgcagcctttgacacataatct 13289423  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||| || ||||||||||||| |||||   | ||||||||||| |||| || |||||| |||||||||||  | |||| ||||||| | |||||||||||    
T  13289422 tcatttgtgaattgatctctccatagagagttttaaaaggagatgaaaagaggttccaaacctgattagtcatgttttcagcttgtttcttctccacctt 13289323  T
Q  216 gcatcg 221  Q
     |||||    
T  13289322 acatcg 13289317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 13170888 - 13170683
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||  ||||||||||  | ||   ||||||||| ||||||| |||| | || | |||||| | ||||||  ||| |||||| ||||    
T  13170888 gaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagttgcagcctttgacacataatct 13170789  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||| || ||||||||||||| |||||   | ||||||||| | |||| || |||||| |||||||||||  | |||| || |||| | |||||||||||    
T  13170788 tcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgattagtcatgttttcagattgtatcttctccacctt 13170689  T
Q  216 gcatcg 221  Q
     |||||    
T  13170688 acatcg 13170683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 13343946 - 13343749
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||  ||||||||||  | ||   ||||||||| ||||||| |||| | || | |||||| |  |||||  ||| |||||| ||||    
T  13343946 gaacttgaaggtgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaatctgcagcctttgacacataatct 13343847  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacc 213  Q
    |||| || ||||||||||||| |||||   | ||||| ||||| |||| || |||||| |||||||||||  | |||| ||||||| | |||||||||    
T  13343846 tcatttgtgaattgatctctccatagagatttttaaacggagacgaaaagaggttccaaacctgattagtcatgttttcagcttgtttcttctccacc 13343749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 26906754 - 26906549
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||| |||||||||| ||||    
T  26906754 gaacttgaaggtgttctacgagaaactctagcacttttagtttgcaaaccaaggatatctttatgttgtgcaaacaattgcaggctttcacacattatct 26906655  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||| || |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||| || ||    
T  26906654 tcatttgagaattgatctctctgtagaagctattaaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcttgtgtattctcgacttt 26906555  T
Q  216 gcatcg 221  Q
    ||||||    
T  26906554 gcatcg 26906549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 44957921 - 44958123
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||  | ||||||||| | |||||| | |||||||  ||||||||| ||||    
T  44957921 gaacttgaaggtgttctatgagaaactctagcacttttagtttccaaaccaattatatctttatgctgtgcaaaaagttgcagggattcacacataatct 44958020  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||| || ||||||||||||| ||||||| | ||||||||||| |||||||||||||| |||||||||||||| ||   | |||||||||||||||| ||    
T  44958021 tcatttgagaattgatctctccatagaagtttttaaaaggagatgaaaggaagttccagacctgattagttttgttggcaacttgtgtattctccacttt 44958120  T
Q  216 gca 218  Q
    |||    
T  44958121 gca 44958123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 50020 - 50222
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||| | ||||| || |  |||||||||||||||| ||| | ||||||    ||| |||| | ||||||| |||||||||||||||    
T  50020 gaacttgaaggtgttctacgtgaaacccttgtgcttttagtttgcaaacgaagtatatcttttcttttttcaaaaagttgcaggctttcacacatgatct 50119  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    ||||||||||||||||||||| ||||    | ||||||| ||| |||| |||||||  |||||||| | ||||  ||||||||| || ||||||||||||    
T  50120 tcatctgggaattgatctctccatagt---ttttaaaagaagatgaaaagaagttcatcacctgataaattttgctttgagcttttgcattctccacctt 50216  T
Q  216 gcatcg 221  Q
    ||||||    
T  50217 gcatcg 50222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 31679945 - 31680135
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||| || |||| ||| |||||  ||||||||| ||||||| |||||| || | |||||| | ||| ||  |||||  |||  |||    
T  31679945 gaacttgaaggtgttctaagaaaaaccctaccacttacagtttgcaacccaaggatatctttttgttgtgcaaaaagttggagcctttcaatcatactct 31680044  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtatt 206  Q
    |||| |||||||||||||||| ||| ||| | | ||||||||| |||||||| ||||| ||||||  |||  | |||| ||||||||||||    
T  31680045 tcatttgggaattgatctctccatacaagttttgaaaaggagatgaaaggaaattccaaacctgaccagtgatgttttcagcttgtgtatt 31680135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 146151 - 146348
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||  ||||||||||  | ||   ||||||||| ||||||| |||| | || | |||||| | ||||||  ||| |||||| ||||    
T  146151 gaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagttgcagcctttgacacataatct 146250  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacc 213  Q
    |||| || ||||||||||||| |||||   | ||||||||||| |||| || |||||| |||||||||||  | |||| ||||||| | |||||||||    
T  146251 tcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgattagtcatgttttcagcttgtttcttctccacc 146348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 136100 - 136305
Alignment:
Q  16 gaacttgaaggagttctatgagaaactctagcacttttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatct 115  Q
    ||||||||||| |||||  ||||||||||  | ||   ||||||||| ||||||| |||| | || | |||||| | ||||||  ||| |||||| ||||    
T  136100 gaacttgaaggcgttcttagagaaactctcccgctcacagtttgcaagccaaggatatctctctgttgtgcaaaaagttgcagcctttgacacataatct 136199  T
Q  116 tcatctgggaattgatctctctatagaagctattaaaaggagaagaaaggaagttccacacctgattagttttattttgagcttgtgtattctccacctt 215  Q
    |||| || ||||||||||||| |||||   | ||||||||| | |||| || |||||| |||||||||||  | |||| || |||| | |||||||||||    
T  136200 tcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgattagtcatgttttcagattgtatcttctccacctt 136299  T
Q  216 gcatcg 221  Q
     |||||    
T  136300 acatcg 136305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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