View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_high_34 (Length: 233)
Name: NF4411_high_34
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_high_34 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 31265653 - 31265442
Alignment:
| Q |
1 |
tgttaattttatctatttaatgtgataagttgactgaaaaattggtccaatagaagaagacatggaaaatgatgtccttgttcaagcctttaaccattat |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31265653 |
tgttaattttatctatttaatgtgataaattgactgaaaaattggtccaatagaagaaaacatggaaaatgatgtccttgttcaagcctttaaccattat |
31265554 |
T |
|
| Q |
101 |
gtatgtggttttagagatggtgtatgccctatatttgatgtgcaaacatatttggttgaacatcaaaattgatggatgataacacaaatttgctttattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31265553 |
gtatgtggttttagagatggtgtatgccctatatttgatgtgcaaacatatttggttgaacatcaaaattgatggatgataacacaaatttgctttattg |
31265454 |
T |
|
| Q |
201 |
ggtatcagtcct |
212 |
Q |
| |
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|||||||||||| |
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| T |
31265453 |
ggtatcagtcct |
31265442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 22357871 - 22357704
Alignment:
| Q |
1 |
tgttaattttatctatttaatgtgataagttgactgaaaaattggt-ccaatagaagaagacatggaaaatgatgtccttgttcaagcctttaaccatta |
99 |
Q |
| |
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||||||||| | ||||||||||||| ||||| |||| |||| | |||| | |||||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
22357871 |
tgttaatttaacttatttaatgtgattagttggttgaagaattaattccaacacaagaagacatggaaaacaatgtctttgttcaagccgttaaccatta |
22357772 |
T |
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| Q |
100 |
tgtatgtggttttagagatggtgtatgccctatatttgatgtgcaaacatatttggttgaacatcaaa |
167 |
Q |
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| | |||| |||||||||||| || |||| |||||||||||||| | ||| ||| ||||||||||| |
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| T |
22357771 |
tcaagttggtattagagatggtgcataccctttatttgatgtgcaagcttatatggctgaacatcaaa |
22357704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 22045254 - 22045367
Alignment:
| Q |
54 |
aagaagacatggaaaatgatgtccttgttcaagcctttaaccattatgtatgtggttttagagatggtgtatgccctatatttgatgtgcaaacatattt |
153 |
Q |
| |
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|||||||||||| |||||||||| ||||| ||||| ||||||||| | | |||| || ||||||||| || |||| |||||||||||||| | ||| | |
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| T |
22045254 |
aagaagacatggtaaatgatgtctttgttaaagccgttaaccattctcaagttggtattggagatggtgcataccctttatttgatgtgcaagcttatat |
22045353 |
T |
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| Q |
154 |
ggttgaacatcaaa |
167 |
Q |
| |
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|| ||||||||||| |
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| T |
22045354 |
ggctgaacatcaaa |
22045367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 12781061 - 12780894
Alignment:
| Q |
2 |
gttaattttatctatttaatgtgataagttgactgaaaaattggtcc-aatagaagaagacatggaaaatgatgtccttgttcaagcctttaaccattat |
100 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||| ||| |||| |||| || ||||||||||||||||||||| ||||||||||||||| ||||||||| | |
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| T |
12781061 |
gttaattttatcgatttattgtgattagttggttgaggaatttgtcccaacagaagaagacatggaaaatgaagtccttgttcaagccgttaaccatttt |
12780962 |
T |
|
| Q |
101 |
gtatgtggttttagagatggtgtatgccctatatttgatgtgcaaacatatttggttgaacatcaaaa |
168 |
Q |
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| | |||||||||||||| || | |||| |||||||||||||||| ||||||| |||||||||||| |
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| T |
12780961 |
gaagttggttttagagatgatgcaaaccctctatttgatgtgcaaacttatttggctgaacatcaaaa |
12780894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 31396139 - 31395972
Alignment:
| Q |
1 |
tgttaattttatctatttaatgtgataagttgactgaaaaattggt-ccaatagaagaagacatggaaaatgatgtccttgttcaagcctttaaccatta |
99 |
Q |
| |
|
||||||||| | ||||||||||||| ||||| ||| ||||||| |||| ||||||||||| ||||||||||| ||||| ||||| ||||||||| |
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| T |
31396139 |
tgttaatttaacttatttaatgtgattagttggttgaggaattggttccaacgcaagaagacatgaaaaatgatgtctttgttaaagccgttaaccattt |
31396040 |
T |
|
| Q |
100 |
tgtatgtggttttagagatggtgtatgccctatatttgatgtgcaaacatatttggttgaacatcaaa |
167 |
Q |
| |
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|| | |||| || ||||||||| || |||| |||||||||||||| | ||| ||| ||||||||||| |
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| T |
31396039 |
tgaagttggtattggagatggtgcataccctttatttgatgtgcaagcttatatggctgaacatcaaa |
31395972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 2501330 - 2501443
Alignment:
| Q |
54 |
aagaagacatggaaaatgatgtccttgttcaagcctttaaccattatgtatgtggttttagagatggtgtatgccctatatttgatgtgcaaacatattt |
153 |
Q |
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|||| |||||||||||||||||| | ||| ||||| ||||||||| || | |||| || ||||||||| | |||| |||||||||||||| | ||| | |
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| T |
2501330 |
aagaggacatggaaaatgatgtcttggttaaagccgttaaccattctgaagttggtattggagatggtgcgtaccctttatttgatgtgcaagcttatat |
2501429 |
T |
|
| Q |
154 |
ggttgaacatcaaa |
167 |
Q |
| |
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|| ||||||||||| |
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| T |
2501430 |
ggctgaacatcaaa |
2501443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 167
Target Start/End: Complemental strand, 2502209 - 2502096
Alignment:
| Q |
54 |
aagaagacatggaaaatgatgtccttgttcaagcctttaaccattatgtatgtggttttagagatggtgtatgccctatatttgatgtgcaaacatattt |
153 |
Q |
| |
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|||||||||||||||||||||| | ||| ||||| ||||| ||| || | |||| || ||||||||| || ||| |||||||||||||| | ||| | |
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| T |
2502209 |
aagaagacatggaaaatgatgtattggttaaagccgttaacgattctgaagttggtattggagatggtgcatatcctttatttgatgtgcaagcttatat |
2502110 |
T |
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| Q |
154 |
ggttgaacatcaaa |
167 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
2502109 |
ggctgaacatcaaa |
2502096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 167
Target Start/End: Complemental strand, 84476 - 84363
Alignment:
| Q |
54 |
aagaagacatggaaaatgatgtccttgttcaagcctttaaccattatgtatgtggttttagagatggtgtatgccctatatttgatgtgcaaacatattt |
153 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||||||| | | |||| || ||||||||| || |||| |||||||||||||| | ||| | |
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| T |
84476 |
aagaagacatggaaaatgatgtctttgttaaagccgttaaccattctcaagttggtattggagatggtgcataccctttatttgatgtgcaagcttatat |
84377 |
T |
|
| Q |
154 |
ggttgaacatcaaa |
167 |
Q |
| |
|
|| | ||||||||| |
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|
| T |
84376 |
ggctaaacatcaaa |
84363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 44355641 - 44355754
Alignment:
| Q |
54 |
aagaagacatggaaaatgatgtccttgttcaagcctttaaccattatgtatgtggttttagagatggtgtatgccctatatttgatgtgcaaacatattt |
153 |
Q |
| |
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|||||||||||| |||||||||| ||||| ||||| ||||||||| | | |||| || ||||||||| || |||| |||||||||||||| | ||| | |
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| T |
44355641 |
aagaagacatggtaaatgatgtctttgttaaagccgttaaccattctcaagttggtattggagatggtgcataccctttatttgatgtgcaagcttatat |
44355740 |
T |
|
| Q |
154 |
ggttgaacatcaaa |
167 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
44355741 |
ggctgaacatcaaa |
44355754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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