View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4411_high_37 (Length: 230)

Name: NF4411_high_37
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4411_high_37
NF4411_high_37
[»] scaffold0190 (1 HSPs)
scaffold0190 (1-214)||(4397-4610)
[»] chr8 (2 HSPs)
chr8 (118-205)||(15745029-15745116)
chr8 (138-204)||(15196262-15196328)
[»] chr4 (9 HSPs)
chr4 (119-214)||(39082298-39082393)
chr4 (110-204)||(39087962-39088056)
chr4 (110-176)||(7615223-7615289)
chr4 (110-204)||(39091353-39091447)
chr4 (110-176)||(7637037-7637103)
chr4 (110-159)||(7606226-7606275)
chr4 (110-191)||(39097652-39097733)
chr4 (120-176)||(7656227-7656283)
chr4 (110-177)||(39070931-39070998)
[»] chr7 (2 HSPs)
chr7 (110-161)||(8936172-8936223)
chr7 (110-159)||(8941817-8941866)
[»] chr3 (2 HSPs)
chr3 (118-176)||(40147453-40147511)
chr3 (118-176)||(8102428-8102486)
[»] chr6 (1 HSPs)
chr6 (118-163)||(6500485-6500530)


Alignment Details
Target: scaffold0190 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 4610 - 4397
Alignment:
Q  1 attgttttgcactctgatgagaggttgaaaaatcactatgaaaattggttaataacaccgagttttgtcacctctggtatggccaacagtgattcattgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4610 attgttttgcactctgatgagaggttgaaaaatcactatgaaaattggttaataacaccgagttttgtcacctctggtatggccaacagtgattcattgg 4511  T
Q  101 tgattggtggttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgggggttcgaataaaagaaatggaaa 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4510 tcattggtggttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgggggttcaaataaaagaaatggaaa 4411  T
Q  201 gatttatgtgtatg 214  Q
    ||||||||||||||    
T  4410 gatttatgtgtatg 4397  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 15745029 - 15745116
Alignment:
Q  118 tggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgggggttcgaataaaagaaatggaaagattt 205  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||  ||||||||| ||||    
T  15745029 tggtttgatgtttatggcaatgattttggttggggaaaacctgtgggggttcgaactgggggtgcaaataaagaaaatggaaatattt 15745116  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 15196262 - 15196328
Alignment:
Q  138 tgattttggttggggaaaacctgtgggggttcgaagtgggggttcgaataaaagaaatggaaagatt 204  Q
    |||| ||||||||||||  ||||||| | ||||||||||  |||| |||||||| ||||||||||||    
T  15196262 tgatattggttggggaagtcctgtggcgattcgaagtggtagttcaaataaaagtaatggaaagatt 15196328  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 39082393 - 39082298
Alignment:
Q  119 ggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgggggttcgaataaaagaaatggaaagatttatgtgtatg 214  Q
    |||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||| |||||||| ||||| ||||||  ||||||||    
T  39082393 ggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatg 39082298  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 39088056 - 39087962
Alignment:
Q  110 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgggggttcgaataaaagaaatggaaagatt 204  Q
    |||||||  ||||||||||||||| |||||||||||||||||| || ||||| ||||||||||| |||||| |||||||||| ||||| ||||||    
T  39088056 gttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcgaagcgggggtgcgaataaaagtaatgggaagatt 39087962  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 7615289 - 7615223
Alignment:
Q  110 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgg 176  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||  ||||| |||||    
T  7615289 gttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtgg 7615223  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 39091447 - 39091353
Alignment:
Q  110 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgggggttcgaataaaagaaatggaaagatt 204  Q
    |||||||  ||||||||||||| |||||||||||||||||||| || |||||||||||| || | || ||| ||||||| |  ||||||||||||    
T  39091447 gttctccgaggtttgatgtttacggtaatgattttggttgggggaagcctgtgggggttagatgcggaggtgcgaataagaataatggaaagatt 39091353  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 7637103 - 7637037
Alignment:
Q  110 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgg 176  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||  ||||| |||||    
T  7637103 gttctccatggtttgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtgg 7637037  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 7606275 - 7606226
Alignment:
Q  110 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacct 159  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||||||    
T  7606275 gttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct 7606226  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 39097733 - 39097652
Alignment:
Q  110 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgggggttcgaataaaag 191  Q
    |||||||  |||||||||||||||||||||| ||||||||||| || ||||| |  ||| ||||||||||| | ||||||||    
T  39097733 gttctccaaggtttgatgtttatggtaatgactttggttggggtaagcctgttgctgttagaagtgggggtgcaaataaaag 39097652  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 7656227 - 7656283
Alignment:
Q  120 gtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgg 176  Q
    ||||||||||||||||||||||||||| |||||||| |||||||  ||||| |||||    
T  7656227 gtttgatgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtgg 7656283  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 39070998 - 39070931
Alignment:
Q  110 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtggg 177  Q
    |||||||  |||||||||||| ||| ||||||||||| |||||||| || |||| |||||||||||||    
T  39070998 gttctccgaggtttgatgtttttggcaatgattttggctggggaaagccagtggcggttcgaagtggg 39070931  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 8936172 - 8936223
Alignment:
Q  110 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgt 161  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||| |||||    
T  8936172 gttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgt 8936223  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 8941817 - 8941866
Alignment:
Q  110 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacct 159  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||||||    
T  8941817 gttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct 8941866  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 40147453 - 40147511
Alignment:
Q  118 tggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgg 176  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||  ||||| |||||    
T  40147453 tggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtgg 40147511  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 8102486 - 8102428
Alignment:
Q  118 tggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgg 176  Q
    ||||||||||||||||| ||| ||||||| ||||||||||| ||||  ||||| |||||    
T  8102486 tggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtgg 8102428  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 6500530 - 6500485
Alignment:
Q  118 tggtttgatgtttatggtaatgattttggttggggaaaacctgtgg 163  Q
    ||||||||| ||||||||||||||||||| ||||| ||||| ||||    
T  6500530 tggtttgatatttatggtaatgattttggatgggggaaacccgtgg 6500485  T

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