View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4411_high_5 (Length: 546)

Name: NF4411_high_5
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4411_high_5
NF4411_high_5
[»] chr3 (6 HSPs)
chr3 (345-527)||(30626472-30626654)
chr3 (345-423)||(36369863-36369941)
chr3 (345-403)||(37627725-37627783)
chr3 (345-403)||(37628429-37628488)
chr3 (343-432)||(45262790-45262880)
chr3 (346-392)||(43276381-43276428)
[»] chr1 (13 HSPs)
chr1 (345-527)||(38459410-38459592)
chr1 (345-527)||(38460564-38460746)
chr1 (240-344)||(30252485-30252589)
chr1 (345-437)||(26852439-26852532)
chr1 (345-413)||(26853092-26853161)
chr1 (345-400)||(39861060-39861115)
chr1 (287-344)||(32583718-32583775)
chr1 (287-344)||(32659276-32659333)
chr1 (181-224)||(30252666-30252709)
chr1 (360-410)||(32017590-32017640)
chr1 (287-344)||(32601388-32601445)
chr1 (345-381)||(38459902-38459938)
chr1 (345-381)||(38461073-38461109)
[»] chr5 (7 HSPs)
chr5 (360-527)||(12423165-12423332)
chr5 (348-437)||(43513821-43513911)
chr5 (345-413)||(43514470-43514539)
chr5 (345-396)||(4549253-4549304)
chr5 (345-394)||(12422520-12422570)
chr5 (48-117)||(6120093-6120162)
chr5 (48-121)||(32621045-32621118)
[»] chr4 (6 HSPs)
chr4 (381-527)||(8719580-8719726)
chr4 (348-437)||(44892351-44892441)
chr4 (345-437)||(11146292-11146385)
chr4 (345-413)||(44891723-44891792)
chr4 (379-413)||(51743920-51743954)
chr4 (345-392)||(7919453-7919501)
[»] chr7 (9 HSPs)
chr7 (345-445)||(2564738-2564838)
chr7 (345-444)||(47676787-47676886)
chr7 (345-403)||(22982783-22982841)
chr7 (349-437)||(11702266-11702354)
chr7 (354-413)||(47677478-47677538)
chr7 (354-423)||(34149491-34149561)
chr7 (354-423)||(34177563-34177633)
chr7 (372-445)||(37117423-37117496)
chr7 (360-411)||(44423509-44423561)
[»] chr2 (5 HSPs)
chr2 (345-422)||(45628519-45628596)
chr2 (345-444)||(44996345-44996444)
chr2 (345-401)||(45627810-45627867)
chr2 (368-421)||(16497685-16497740)
chr2 (345-423)||(44995644-44995723)
[»] chr8 (7 HSPs)
chr8 (360-413)||(3298134-3298187)
chr8 (349-445)||(3294797-3294893)
chr8 (345-396)||(3528786-3528837)
chr8 (360-425)||(31278938-31278999)
chr8 (349-406)||(3528017-3528075)
chr8 (37-153)||(30193283-30193397)
chr8 (345-413)||(37651670-37651738)
[»] chr6 (1 HSPs)
chr6 (345-407)||(13852966-13853029)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 8e-87; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 345 - 527
Target Start/End: Original strand, 30626472 - 30626654
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatccatttaacctgccaccgg 444  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30626472 gagaaatgctagggtcacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatgcatttaacctgccaccgg 30626571  T
Q  445 ttccacagatttaaggaaaaaacattatcttttgtccaccttcttccaccagtgtcttttattttgcagagaaagagactacc 527  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30626572 ttccacaggtttaaggaaaaagcattatcttttgtccaccttcttccaccagtgtcttttattttgcagagaaagagactacc 30626654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 345 - 423
Target Start/End: Complemental strand, 36369941 - 36369863
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttcttttt 423  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||  |||||||||| |||||||||||    
T  36369941 gagaaatgttagggtcacactccctaacatactctttaacacactccaataaaaaccagccacatcatcacttcttttt 36369863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 37627725 - 37627783
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattag 403  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  37627725 gagaaatgctagggacacactccctaacacactctttaacacacaccaatcaaaattag 37627783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 37628488 - 37628429
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactc-tttaacacactccaataaaaattag 403  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||| ||||| ||||||||    
T  37628488 gagaaatgctagggacacactccctaacacactcttttaacacacaccaatcaaaattag 37628429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 432
Target Start/End: Original strand, 45262790 - 45262880
Alignment:
Q  343 tcgagaaatgttagggccacactccctaacacact-ctttaacacactccaataaaaattagccacatca-ccacttctttttatccattta 432  Q
    |||||||||| ||||| ||||||||||||| |||| || ||||| |||||||| | |||||||||||||| |||| ||||||||| ||||||    
T  45262790 tcgagaaatgctagggacacactccctaactcactcctataacatactccaatgataattagccacatcatccac-tctttttattcattta 45262880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 392
Target Start/End: Original strand, 43276381 - 43276428
Alignment:
Q  346 agaaatgttagggccacactccctaacacactc-tttaacacactcca 392  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  43276381 agaaatgctagggacacactccctaacacactcttttaacacactcca 43276428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 345 - 527
Target Start/End: Original strand, 38459410 - 38459592
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatccatttaacctgccaccgg 444  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38459410 gagaaatgctagggacacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatgcatttaacctgccaccgg 38459509  T
Q  445 ttccacagatttaaggaaaaaacattatcttttgtccaccttcttccaccagtgtcttttattttgcagagaaagagactacc 527  Q
     ||||||  ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38459510 atccacatgtttaaggaataagcattatcttttgtccaccttcttccaccagtgtcttttattttgcagagaaagagactacc 38459592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 345 - 527
Target Start/End: Complemental strand, 38460746 - 38460564
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatccatttaacctgccaccgg 444  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38460746 gagaaatgctagggacacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatgcatttaacctgccaccgg 38460647  T
Q  445 ttccacagatttaaggaaaaaacattatcttttgtccaccttcttccaccagtgtcttttattttgcagagaaagagactacc 527  Q
     ||||||  ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38460646 atccacatgtttaaggaataagcattatcttttgtccaccttcttccaccagtgtcttttattttgcagagaaagagactacc 38460564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 240 - 344
Target Start/End: Complemental strand, 30252589 - 30252485
Alignment:
Q  240 ttcttttcaatctcatttatatgggccaacatatcagcaagttgtaccattccaatttttgaaactcttttcttcggaagttttgctgagccaaccttcg 339  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30252589 ttcttttcaatctcatttatttgggccaacatatcagcaagttgtaccattccaatttttgaaactcttttcttcggaagttttgctgagccaaccttcg 30252490  T
Q  340 aaatc 344  Q
    |||||    
T  30252489 aaatc 30252485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 437
Target Start/End: Original strand, 26852439 - 26852532
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactcttt-aacacactccaataaaaattagccacatcaccacttctttttatccatttaacctg 437  Q
    |||||||| |||||  ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||  |||||| ||| |||||||||||    
T  26852439 gagaaatgctagggatacactccctaacacactcttttaacacactccaattaaaatttgccacatcacccattctttgtattcatttaacctg 26852532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 345 - 413
Target Start/End: Complemental strand, 26853161 - 26853092
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactc-tttaacacactccaataaaaattagccacatcacc 413  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||||| |||||||||||    
T  26853161 gagaaatgctagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatcacc 26853092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 39861115 - 39861060
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaat 400  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||| |||| |||||    
T  39861115 gagaaatgctagggtcacactccctaatacactctttaacacacttcaattaaaat 39861060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 32583718 - 32583775
Alignment:
Q  287 cattccaatttttgaaactcttttcttcggaagttttgctgagccaaccttcgaaatc 344  Q
    |||||| |||||| |||||||| |||||| ||| ||| ||||||||||||||||||||    
T  32583718 cattcccattttttaaactcttctcttcgaaagatttcctgagccaaccttcgaaatc 32583775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 32659276 - 32659333
Alignment:
Q  287 cattccaatttttgaaactcttttcttcggaagttttgctgagccaaccttcgaaatc 344  Q
    |||||| |||||| |||||||| |||||| ||| ||| ||||||||||||||||||||    
T  32659276 cattcccattttttaaactcttctcttcgaaagatttcctgagccaaccttcgaaatc 32659333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 30252709 - 30252666
Alignment:
Q  181 tcatatgagctagtgtgtgttcagacaaacatatcacccttcct 224  Q
    |||||||||||||||||||| |||||| |||||||| |||||||    
T  30252709 tcatatgagctagtgtgtgtccagacatacatatcagccttcct 30252666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 32017590 - 32017640
Alignment:
Q  360 cacactccctaacacactctttaacacactccaataaaaattagccacatc 410  Q
    ||||||| ||||||| |||||| |||||||||||||| |||| ||||||||    
T  32017590 cacactctctaacactctctttgacacactccaataagaatttgccacatc 32017640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 32601388 - 32601445
Alignment:
Q  287 cattccaatttttgaaactcttttcttcggaagttttgctgagccaaccttcgaaatc 344  Q
    |||||| ||||||  ||||||| |||||| ||| ||| ||||||||||||||||||||    
T  32601388 cattcccattttttgaactcttctcttcgtaagatttcctgagccaaccttcgaaatc 32601445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 38459902 - 38459938
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactcttt 381  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  38459902 gagaaatgntagggacacactccctaacacactcttt 38459938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 38461109 - 38461073
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactcttt 381  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  38461109 gagaaatgctagggacacactccctaacacactcttt 38461073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 7e-78; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 360 - 527
Target Start/End: Complemental strand, 12423332 - 12423165
Alignment:
Q  360 cacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatccatttaacctgccaccggttccacagatttaag 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  12423332 cacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatgcattttacctgccaccggttccacaggtttaag 12423233  T
Q  460 gaaaaaacattatcttttgtccaccttcttccaccagtgtcttttattttgcagagaaagagactacc 527  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12423232 gaaaaagcattatcttttgtccaccttcttccactagtgtcttttattttgcagagaaagagactacc 12423165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 43513821 - 43513911
Alignment:
Q  348 aaatgttagggccacactccctaacacactcttt-aacacactccaataaaaattagccacatcaccacttctttttatccatttaacctg 437  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||  || ||| ||| |||||||||||    
T  43513821 aaatgctagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatcacccattatttgtattcatttaacctg 43513911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 345 - 413
Target Start/End: Complemental strand, 43514539 - 43514470
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactc-tttaacacactccaataaaaattagccacatcacc 413  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||||| |||||||||||    
T  43514539 gagaaatgctagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatcacc 43514470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 4549304 - 4549253
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataa 396  Q
    |||||||| ||||| |||||||||||||||||||||| ||||||||||||||    
T  4549304 gagaaatgctagggacacactccctaacacactctttgacacactccaataa 4549253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 12422520 - 12422570
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactc-tttaacacactccaat 394  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  12422520 gagaaatgttagggacacactccctaacacactcttttgacacactccaat 12422570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 6120162 - 6120093
Alignment:
Q  48 taataatatgataaaatgaaagcaatggaatgtagatgattgtcatgtgggtgaagtgtaaacatagtta 117  Q
    ||||||| |||||||||||||| ||| |||  |||||||||||| ||| | || | ||||||||||||||    
T  6120162 taataatttgataaaatgaaagtaattgaaaatagatgattgtcgtgttgctggaatgtaaacatagtta 6120093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 32621118 - 32621045
Alignment:
Q  48 taataatatgataaaatgaaagcaatggaatgtagatgattgtcatgtgggtgaagtgtaaacatagttaaaat 121  Q
    ||||||| ||||||||| |||| ||| | || |||||||||||| ||| | || | ||||||||||||||||||    
T  32621118 taataatttgataaaataaaagtaattggatatagatgattgtcgtgttgctggaatgtaaacatagttaaaat 32621045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 381 - 527
Target Start/End: Complemental strand, 8719726 - 8719580
Alignment:
Q  381 taacacactccaataaaaattagccacatcaccacttctttttatccatttaacctgccaccggttccacagatttaaggaaaaaacattatcttttgtc 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  8719726 taacacactccaataaaaattagccacatcaccacttctttttatgcatttaacctgccaccggttccacaggtttaaggaaaaagcattatcttttgtc 8719627  T
Q  481 caccttcttccaccagtgtcttttattttgcagagaaagagactacc 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8719626 caccttcttccaccagtgtcttttattttgcagagaaagagactacc 8719580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 437
Target Start/End: Complemental strand, 44892441 - 44892351
Alignment:
Q  348 aaatgttagggccacactccctaacacactcttt-aacacactccaataaaaattagccacatcaccacttctttttatccatttaacctg 437  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||  || ||| ||| |||||||||||    
T  44892441 aaatgctagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatcacccattatttgtattcatttaacctg 44892351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 345 - 437
Target Start/End: Original strand, 11146292 - 11146385
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactcttt-aacacactccaataaaaattagccacatcaccacttctttttatccatttaacctg 437  Q
    |||||||| ||||  |||||||||||||||||||||| |||||||| |||| |||||| |||||||||||  |||||| ||| |||||||||||    
T  11146292 gagaaatgctaggaacacactccctaacacactcttttaacacacttcaattaaaatttgccacatcacccattctttgtattcatttaacctg 11146385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 345 - 413
Target Start/End: Original strand, 44891723 - 44891792
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactc-tttaacacactccaataaaaattagccacatcacc 413  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||||| |||||||||||    
T  44891723 gagaaatgctagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatcacc 44891792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 51743920 - 51743954
Alignment:
Q  379 tttaacacactccaataaaaattagccacatcacc 413  Q
    |||||||||||||||| ||||||||||||||||||    
T  51743920 tttaacacactccaattaaaattagccacatcacc 51743954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 392
Target Start/End: Original strand, 7919453 - 7919501
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactc-tttaacacactcca 392  Q
    |||||||||||||| || ||||||||||||| || ||||||||||||||    
T  7919453 gagaaatgttagggacagactccctaacacattcttttaacacactcca 7919501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 345 - 445
Target Start/End: Original strand, 2564738 - 2564838
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatccatttaacctgccaccgg 444  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| |  ||||||||||  |||| ||||| ||||||    
T  2564738 gagaaatgctagggtcacactccctaacatactctttaacacactccaatagaaattagccacatcatccattctttttatttatttcacctgtcaccgg 2564837  T
Q  445 t 445  Q
    |    
T  2564838 t 2564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 444
Target Start/End: Original strand, 47676787 - 47676886
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatccatttaacctgccaccgg 444  Q
    |||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |||  ||||||||| |||||||| ||   ||||||||| ||||||    
T  47676787 gagaaatgctagggacacactccctaacacactctctaacacactccaataaaatttaatcacatcaccccttcttttaattattttaacctggcaccgg 47676886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 22982783 - 22982841
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattag 403  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||| |||||||    
T  22982783 gagaaatgccagggtcacactccctaacacactctttaacacactccaatagaaattag 22982841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 437
Target Start/End: Original strand, 11702266 - 11702354
Alignment:
Q  349 aatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatccatttaacctg 437  Q
    |||| ||||| ||||| | |||||||||||||| |||||||||||| |||||||||||||||||   || ||||||| | |||||||||    
T  11702266 aatgctagggacacaccctctaacacactctttgacacactccaatgaaaattagccacatcacttattttttttattcttttaacctg 11702354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 47677538 - 47677478
Alignment:
Q  354 tagggccacactccctaacacactcttt-aacacactccaataaaaattagccacatcacc 413  Q
    ||||| |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||    
T  47677538 tagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatcacc 47677478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 423
Target Start/End: Original strand, 34149491 - 34149561
Alignment:
Q  354 tagggccacactccctaacacactc-tttaacacactccaataaaaattagccacatcaccacttcttttt 423  Q
    ||||| ||||| | ||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||    
T  34149491 tagggacacaccctctaacacactcatttaacacactccaataaaaaattgccacatcaccccttcttttt 34149561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 34177633 - 34177563
Alignment:
Q  354 tagggccacactccctaacacactc-tttaacacactccaataaaaattagccacatcaccacttcttttt 423  Q
    ||||| ||||| | ||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||    
T  34177633 tagggacacaccctctaacacactcatttaacacactccaataaaaaattgccacatcaccccttcttttt 34177563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 445
Target Start/End: Original strand, 37117423 - 37117496
Alignment:
Q  372 cacactctttaacacactccaataaaaattagccacatcaccacttctttttatccatttaacctgccaccggt 445  Q
    |||||||  ||| ||||||| ||||||||||||||||||||| ||| ||||| | | |||||||||| ||||||    
T  37117423 cacactccctaatacactcccataaaaattagccacatcaccccttttttttgttcctttaacctgcaaccggt 37117496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 44423561 - 44423509
Alignment:
Q  360 cacactccctaacacactctt-taacacactccaataaaaattagccacatca 411  Q
    |||||||| |||||||||||| |||||||||||||||| || |||||||||||    
T  44423561 cacactccttaacacactcttataacacactccaataataactagccacatca 44423509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 345 - 422
Target Start/End: Complemental strand, 45628596 - 45628519
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttt 422  Q
    |||||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||||    
T  45628596 gagaaatgctagggacacactccctaacacactctctaacacactccaataaaatttaaccacatcaccccttctttt 45628519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 444
Target Start/End: Complemental strand, 44996444 - 44996345
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatccatttaacctgccaccgg 444  Q
    |||||||| ||| | |||||||||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||| ||   ||||||||| ||||||    
T  44996444 gagaaatgctagagacacactccctaacacactctctaacacactccaataaaatttaaccacatcaccccttcttttaattattttaacctgacaccgg 44996345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 45627810 - 45627867
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactc-tttaacacactccaataaaaatt 401  Q
    |||||||| ||||| || |||||||||||||||| |||||||||||||||| ||||||    
T  45627810 gagaaatgctagggacaaactccctaacacactcttttaacacactccaattaaaatt 45627867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 421
Target Start/End: Complemental strand, 16497740 - 16497685
Alignment:
Q  368 ctaacacactcttt-aacacactccaataaaaattagccacatca-ccacttcttt 421  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||    
T  16497740 ctaacacactcttttaacacactccaatcaaaattacccacatcatccacttcttt 16497685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 423
Target Start/End: Original strand, 44995644 - 44995723
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactcttt-aacacactccaataaaaattagccacatcaccacttcttttt 423  Q
    ||||||||  |||| || |||| |||||| ||||||| ||||||||||||| |||||| ||||||||||| || ||||||    
T  44995644 gagaaatgccagggacaaactctctaacatactcttttaacacactccaattaaaatttgccacatcacctctccttttt 44995723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 413
Target Start/End: Complemental strand, 3298187 - 3298134
Alignment:
Q  360 cacactccctaacacactctttaacacactccaataaaaattagccacatcacc 413  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  3298187 cacactccctaacacactctttaacacactccaatcaaaaatagacacatcacc 3298134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 3294797 - 3294893
Alignment:
Q  349 aatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatccatttaacctgccaccggt 445  Q
    |||||||||| ||||||| ||||||||| |||| |||||||||||| ||||  |||||  |||||  |||||||||| | ||||||||| |||||||    
T  3294797 aatgttagggacacactctctaacacaccctttgacacactccaattaaaaccagccatgtcacctgttctttttattcttttaacctgtcaccggt 3294893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 3528837 - 3528786
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataa 396  Q
    |||||||| ||||| |||||||||||||||||||||| ||||||||||||||    
T  3528837 gagaaatgctagggacacactccctaacacactctttgacacactccaataa 3528786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 31278938 - 31278999
Alignment:
Q  360 cacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttat 425  Q
    ||||||||||||||||||    |||| ||||||||| ||||||||||||||||| || ||||||||    
T  31278938 cacactccctaacacact----aacatactccaatagaaattagccacatcacccctcctttttat 31278999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 3528017 - 3528075
Alignment:
Q  349 aatgttagggccacactccctaacacactc-tttaacacactccaataaaaattagcca 406  Q
    |||| ||||| ||||||||||||||||||| ||| |||||||||||||| ||| |||||    
T  3528017 aatgctagggacacactccctaacacactcttttgacacactccaataataataagcca 3528075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 30193397 - 30193283
Alignment:
Q  37 gtagacactagtaataatatgataaaatgaaagcaatggaatgtagatgattgtcatgtgggtgaagtgtaaacatagttaaaatatgagtaatgcatta 136  Q
    |||||||| | ||||||| |||||||| ||||   ||||||| |||||||||||| ||| |||||| |||||| ||| |||||| |   ||||| |||||    
T  30193397 gtagacaccaataataatttgataaaa-gaaatttatggaatatagatgattgtcgtgttggtgaaatgtaaatataattaaaaaaattgtaatacatta 30193299  T
Q  137 taatgacgtctttgtac 153  Q
    | ||||| |||||||||    
T  30193298 t-atgacatctttgtac 30193283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 413
Target Start/End: Original strand, 37651670 - 37651738
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcacc 413  Q
    |||||||| || || |||||||  |||||| |  |||||||||||||||| |||||||| |||||||||    
T  37651670 gagaaatgctaaggtcacactctttaacacgccttttaacacactccaattaaaattagacacatcacc 37651738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 407
Target Start/End: Complemental strand, 13853029 - 13852966
Alignment:
Q  345 gagaaatgttagggccacactccctaacacactc-tttaacacactccaataaaaattagccac 407  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||| ||||| |||| |||||||    
T  13853029 gagaaatgctagggtcacactccctaacacactcttttaacacacaccaatcaaaactagccac 13852966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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