View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4411_low_10 (Length: 499)

Name: NF4411_low_10
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4411_low_10
NF4411_low_10
[»] chr5 (10 HSPs)
chr5 (28-485)||(22983113-22983565)
chr5 (263-473)||(21249944-21250154)
chr5 (265-474)||(22933148-22933357)
chr5 (264-467)||(22928535-22928738)
chr5 (264-467)||(23022004-23022207)
chr5 (263-467)||(21264173-21264377)
chr5 (264-474)||(21350854-21351064)
chr5 (265-467)||(21211830-21212032)
chr5 (265-463)||(22963066-22963264)
chr5 (265-463)||(21320273-21320471)
[»] scaffold0009 (3 HSPs)
scaffold0009 (264-473)||(23204-23413)
scaffold0009 (398-464)||(215276-215342)
scaffold0009 (332-472)||(258385-258525)
[»] scaffold0056 (1 HSPs)
scaffold0056 (266-472)||(62343-62549)
[»] chr8 (1 HSPs)
chr8 (263-473)||(26914196-26914406)
[»] scaffold0328 (1 HSPs)
scaffold0328 (398-467)||(8786-8855)


Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 28 - 485
Target Start/End: Original strand, 22983113 - 22983565
Alignment:
28 ttaaaatggtatggagggagtatcaagtatgtctagccaacttttttgtcatttttgttaaaatagtcgcttttcttttgctatttaacttgttactaga 127  Q
    ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||    
22983113 ttaaaatgggacggagggagtatcaagcatgtctagccaacttttttgtcatttttgtttaaatattcgcttttcttttgttatttgacttgttactaga 22983212  T
128 gtcttcaaccattttgaggttactaaattatgtttaactttttctccatgacactttatttttaatttcaaaaatggattttgactaatgaaatgaattt 227  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||     ||||| |||||||||||||||||| |||||||||||||||||    
22983213 gtcttcaaccattttgaggttactaaagtatgttcaaccttttctccatgaca-----ttttttatttcaaaaatggattttaactaatgaaatgaattt 22983307  T
228 caatttgttaactatgtcatgatcaattttatgtcaattacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatcc 327  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22983308 caatttgttaactatgtcatgatcaattttatgtctcttacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatcc 22983407  T
328 attgtccatcttttcttatttggaggccttcaacatgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatg 427  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22983408 attgtccatcttttcttatttggaggccttcaacatcattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatg 22983507  T
428 ctctggttgtggacatggaggatagtaattcatcctcattccttgatgaattgcatct 485  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
22983508 ctctggttgtggacatggaggatagtaatttatcctcattccttgatgaattgcatct 22983565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 263 - 473
Target Start/End: Complemental strand, 21250154 - 21249944
Alignment:
263 aattacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttcaaca 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |      
21250154 aattacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacaggaatccattgtccatcttttcttatttggaggccttctatt 21250055  T
363 tgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcc 462  Q
    | |||||||||||||||||||||||| ||||| | ||||||||||||| | | |||||| ||||  |||||||| ||||||||||||||  |||||  ||    
21250054 tcattggcttgtagaaggatggttaaagcaccaacatcagaatgaggattcagtccaataacattttctggttgaggacatggaggatacaaattccacc 21249955  T
463 tcattccttga 473  Q
    ||||| |||||    
21249954 tcattgcttga 21249944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 265 - 474
Target Start/End: Complemental strand, 22933357 - 22933148
Alignment:
265 ttacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttcaacatg 364  Q
    ||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||     
22933357 ttacctccaacatgtctccaaggttgacgacgaaagcattagggaggggttgaacaggaatccattgtccatcttttcttatttgaaggccttcaatatc 22933258  T
365 attggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcctc 464  Q
    ||| ||||| |||||||||||||    ||||||||||||||||||| ||| |||||| |||| ||||||||| ||||||||||| |||||||||||||||    
22933257 attagcttgaagaaggatggttagcatacccatatcagaatgaggatttagtccaatgacattctctggttggggacatggagggtagtaattcatcctc 22933158  T
465 attccttgat 474  Q
    ||||||||||    
22933157 attccttgat 22933148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 264 - 467
Target Start/End: Complemental strand, 22928738 - 22928535
Alignment:
264 attacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttcaacat 363  Q
    ||||||||||| || ||||||| ||| |||||||||||||  | ||| |||| |||||||||||| ||||||||||||| ||||||||| ||||| |  |    
22928738 attacctccaaaatgtctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcgatgt 22928639  T
364 gattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcct 463  Q
     |||||||||||||||||||||||||||||||  ||||||||||||| | | |||||| ||||  |||||||| ||||| ||||||||||||||||||||    
22928638 cattggcttgtagaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggaggatagtaattcatcct 22928539  T
464 catt 467  Q
    ||||    
22928538 catt 22928535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 264 - 467
Target Start/End: Original strand, 23022004 - 23022207
Alignment:
264 attacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttcaacat 363  Q
    ||||||||||| || |||||||  || |||||||||||||  | ||| |||| |||||||||||| ||||||||||||| ||||||||| |||||||  |    
23022004 attacctccaaaatgtctccaacatttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttggagaccttcaatgt 23022103  T
364 gattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcct 463  Q
     |||||||||||||||||||||||||||||||  ||||||||||||| | | |||||| ||||  |||||||| ||||| ||||||||||||||||||||    
23022104 cattggcttgtagaaggatggttaaggcacccgcatcagaatgaggattgagtccaatgacattttctggttggggacaaggaggatagtaattcatcct 23022203  T
464 catt 467  Q
    ||||    
23022204 catt 23022207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 263 - 467
Target Start/End: Complemental strand, 21264377 - 21264173
Alignment:
263 aattacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttcaaca 362  Q
    ||||||||| || |||||||||| ||| |||||||||||||| |  || |||| |||||||| ||||||||||||||||||||||||||| ||||| ||     
21264377 aattacctcgaaaatatctccaacgtttatgacaaaagcattggtcagtggtttaacagaaacccattgtccatcttttcttatttggagaccttcgacg 21264278  T
363 tgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcc 462  Q
    | ||| ||||| ||||||||||| |||||| ||  ||||||||||||| | | |||||| ||||  |||||||| ||||| ||||| ||| |  ||||||    
21264277 tcatttgcttggagaaggatggtcaaggcagccgcatcagaatgaggattcagtccaatgacattttctggttggggacagggagggtagcatgtcatcc 21264178  T
463 tcatt 467  Q
    |||||    
21264177 tcatt 21264173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 264 - 474
Target Start/End: Complemental strand, 21351064 - 21350854
Alignment:
264 attacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttcaacat 363  Q
    |||||||||||||| ||||||||||||| ||||||||||| || |||||| |  | || ||||||   ||| |||||||| ||||| |||||||| || |    
21351064 attacctccaacatgtctccaatgttgacgacaaaagcatcagagaggggcttgataggaatccacattccgtcttttctgatttgaaggccttccactt 21350965  T
364 gattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcct 463  Q
     |||| |||| |||||||| || | ||||||   ||||||||||||  | | |||||| ||||||||||| || |||||||| |||||||||||||||||    
21350964 cattgacttggagaaggatagtaagggcaccagaatcagaatgaggtttgagtccaatgacatgctctggctggggacatgggggatagtaattcatcct 21350865  T
464 cattccttgat 474  Q
    |||||||||||    
21350864 cattccttgat 21350854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 467
Target Start/End: Complemental strand, 21212032 - 21211830
Alignment:
265 ttacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttcaacatg 364  Q
    ||||||| | ||| |||||||||||||| ||||||||||| | ||| || | || || ||||||   |||||||||| ||||||| |||||||| |  |     
21212032 ttacctctagcatgtctccaatgttgataacaaaagcatttgtgagaggcttaataggaatccacattccatctttttttatttgaaggccttctatttc 21211933  T
365 attggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcctc 464  Q
    ||||  ||| ||||| ||||| | ||||     ||||||||||||| | | |||||| || |  |||||||| ||||| |||||||||||||||||||||    
21211932 attgagttgaagaagaatggtaagggcagtaccatcagaatgaggattaagtccaatgactttgtctggttggggacaaggaggatagtaattcatcctc 21211833  T
465 att 467  Q
    |||    
21211832 att 21211830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 463
Target Start/End: Original strand, 22963066 - 22963264
Alignment:
265 ttacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttcaacatg 364  Q
    |||||||||||||||||||||| ||||  | |||||||||||  |||| ||  | || ||||||   |||||||||| ||||||| || |||| ||  |     
22963066 ttacctccaacatatctccaatattgaccataaaagcattagaaagggatttgataggaatccacattccatctttttttatttgaagtccttgaatttc 22963165  T
365 attggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcct 463  Q
    |||  |||  ||||||||||| | |||| |   |||||| |||||| | | |||||| || || |||||||| ||||||||||||||||||||||||||    
22963166 atttacttcaagaaggatggtaagggcaacaccatcagagtgaggattaagtccaataacttgttctggttgaggacatggaggatagtaattcatcct 22963264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 265 - 463
Target Start/End: Complemental strand, 21320471 - 21320273
Alignment:
265 ttacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttcaacatg 364  Q
    ||||||| |||| ||||||||||||||  ||||||||||||||||| || |  | || || |||   |||||||||| ||||||| |||||||  |  |     
21320471 ttacctctaacaaatctccaatgttgaccacaaaagcattagggagaggattgataggaacccacattccatctttttttatttgaaggccttgcatttc 21320372  T
365 attggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcct 463  Q
    |||| |||| ||||||||||| | |||||    ||| ||||||||| | | |||||| || || |||||||| ||||| ||||| || |||||||||||    
21320371 attgacttggagaaggatggtaagggcactagcatctgaatgaggattaagtccaatgacttgatctggttgaggacagggagggtaataattcatcct 21320273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 86; Significance: 7e-41; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 264 - 473
Target Start/End: Original strand, 23204 - 23413
Alignment:
264 attacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttcaacat 363  Q
    |||||||| ||||| ||||||||||| | ||||||||||   | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||  |    
23204 attacctctaacatgtctccaatgtttacgacaaaagcaccggcgagtggtttaacagaaatccattgtccatcttttcttatttggaggccttcaatgt 23303  T
364 gattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcct 463  Q
     ||||||||| |||||||| ||||||  | ||  ||||||||| ||| | | |||||| ||||  |||||||| ||||| ||||||||||||||||||||    
23304 cattggcttggagaaggatagttaagcaatccgcatcagaatgcggattcaatccaatgacattttctggttggggacaaggaggatagtaattcatcct 23403  T
464 cattccttga 473  Q
    | || |||||    
23404 cgttgcttga 23413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 464
Target Start/End: Original strand, 215276 - 215342
Alignment:
398 atcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcctc 464  Q
    ||||||||||||| | | |||||| || || |||||||| |||||||||||||||||||||||||||    
215276 atcagaatgaggattgagtccaatgacttgatctggttgaggacatggaggatagtaattcatcctc 215342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 472
Target Start/End: Original strand, 258385 - 258525
Alignment:
332 tccatcttttcttatttggaggccttcaacatgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctct 431  Q
    |||||| ||| ||||||| || ||||| |  | |||| |||| ||||||||||| | || |||   ||||||||||||| | | |||||| || || |||    
258385 tccatccttttttatttgaagtccttccatttcattgacttggagaaggatggtaagggtaccagcatcagaatgaggattcagtccaatgacttgatct 258484  T
432 ggttgtggacatggaggatagtaattcatcctcattccttg 472  Q
    ||||| ||||| ||||| || |||||||| |||||| ||||    
258485 ggttgaggacaaggagggtaataattcattctcattgcttg 258525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 266 - 472
Target Start/End: Original strand, 62343 - 62549
Alignment:
266 tacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttcaacatga 365  Q
    |||||| ||||| |||||||||||||| ||||||||||| | ||| || | || || ||||||   |||||||||||||| ||| ||||||||||  | |    
62343 tacctctaacatgtctccaatgttgatcacaaaagcatttgagagtggcttaataggaatccacattccatcttttcttacttgaaggccttcaatttca 62442  T
366 ttggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcctca 465  Q
    |||  ||| ||||| ||||| |  ||||| | ||||||||||||| | | |||||| || || |||||||| ||||||||||||||||||||||||||||    
62443 ttgagttggagaagaatggtaagagcaccaacatcagaatgaggattgagtccaatgacttgttctggttgaggacatggaggatagtaattcatcctca 62542  T
466 ttccttg 472  Q
    || ||||    
62543 ttgcttg 62549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 473
Target Start/End: Original strand, 26914196 - 26914406
Alignment:
263 aattacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttggaggccttcaaca 362  Q
    ||||||||| | ||| |||||||||||||| ||||||||||| | ||| || | || || ||||||   |||||||||| ||||||| |||||||| |      
26914196 aattacctctagcatgtctccaatgttgataacaaaagcatttgtgagaggcttaataggaatccacattccatctttttttatttgaaggccttctatt 26914295  T
363 tgattggcttgtagaaggatggttaaggcacccatatcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcc 462  Q
    | ||||  ||| ||||| ||||| | ||||     ||||||||||||| | | |||||| || |  |||||||| ||||| |||||||||||||||||||    
26914296 tcattgagttggagaagaatggtaagggcagtaccatcagaatgaggattgagtccaatgactttgtctggttggggacaaggaggatagtaattcatcc 26914395  T
463 tcattccttga 473  Q
    ||||| |||||    
26914396 tcattgcttga 26914406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 467
Target Start/End: Complemental strand, 8855 - 8786
Alignment:
398 atcagaatgaggacttactccaattacatgctctggttgtggacatggaggatagtaattcatcctcatt 467  Q
    |||||||||||||   | |||||| || ||||||||||| ||||||||||| || |||||||||||||||    
8855 atcagaatgaggatcaagtccaatgacttgctctggttgaggacatggagggtaataattcatcctcatt 8786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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