View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4411_low_12 (Length: 492)
Name: NF4411_low_12
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_12 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 477
Target Start/End: Complemental strand, 4554559 - 4554095
Alignment:
| Q |
17 |
tcatcttccacatagaacacaagcatttcactgcaatttttcttctgactcctcccttannnnnnnnnn----ccttcttttattcttcaactaaattag |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
4554559 |
tcatctttcacatagaacacaagcatttcactgcaatttttcttctgactcctcccttattctttttttttttccttcttttattcttcaactaaattag |
4554460 |
T |
|
| Q |
113 |
gaaattaattttgttcaattttgcttattatgactatgaagttacaatcttatcttgtatgaatataaataaaggataatcgctagtttgcaatcttatt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
4554459 |
gaaattaattttgttcagttttgcttattataattatgaagttacaatcttatcttatatgaatataaatgaaggataatcgctagtttgcaatcttatt |
4554360 |
T |
|
| Q |
213 |
ttatatgttcaaaacaaaatcttagtataaactataaacataagatactataatgaaatgatttaacataacaattactcagtaaaaacttatcaaaata |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4554359 |
ttatatgttcaaaacaaaatcttagtataaactataaacataagatactataatgaaatgatttaacataacaattactcagtaaaaacttatcaaaata |
4554260 |
T |
|
| Q |
313 |
aatcataactccccaattaatttccttcagaaccaacgtcaaattaactatcctatacaattttagttctcttcttgtttgttgccttggcatatgcaaa |
412 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
4554259 |
aatcataactccccaattaattttcttcagaaccaacgtcaaattaactatcttgtacaattttagttctcttcttgtttgttgccttggcagttgcaaa |
4554160 |
T |
|
| Q |
413 |
ttttagaaaatacaatgaagtttgttgtggtagtttttcaaatccgaatttgttctggttgtttt |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4554159 |
ttttagaaaatacaatgaagtttgttgtggtagtttttcaaatccgaatttgttcttgttgtttt |
4554095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 87 - 457
Target Start/End: Complemental strand, 17495134 - 17494770
Alignment:
| Q |
87 |
cttcttttattcttcaactaaattaggaaattaattttgttcaattttgcttattatgactatgaagttacaatcttatcttgtatgaatataaat-aaa |
185 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||||||||| |||| |||||| | ||| |
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|
| T |
17495134 |
cttcttttattcaccaactaaattaggaaattaattttgttaagttttgctagttatgattatgaagttacaatcttatcttatatggatataattcaaa |
17495035 |
T |
|
| Q |
186 |
ggataatcgctagtttgcaatcttattttatatgttcaaaacaaaatcttagtataaactataaacataagatactataatgaaatgatttaacataaca |
285 |
Q |
| |
|
| ||||| |||| || ||||||||| ||||||||| |||||||||||| | ||||| ||||||||||||||| ||||||| |||||||||| |
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|
| T |
17495034 |
gtgtaatcactagcttacaatcttatcttatatgtttaaaacaaaatctcgggataaat-------ataagatactataattaaatgatctaacataaca |
17494942 |
T |
|
| Q |
286 |
attactcagtaaaaacttatcaaaataaatcataactccccaattaatttccttcagaaccaacgtcaaattaactatcctatacaattttagttctctt |
385 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||| ||||||| |||| |||||||||||| ||||||||| ||||||||||| ||||| ||||||| |
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|
| T |
17494941 |
attactcagtaaaaatttatcaaaatagatcctaacttcccaatttattttcttcagaaccaaaatcaaattaattatcctatacagttttatttctctt |
17494842 |
T |
|
| Q |
386 |
cttgtttgttgccttggcatatgcaaattttagaaaatacaatgaagtttgttgtggtagtttttcaaatcc |
457 |
Q |
| |
|
||| ||||||| ||||| ||| ||||||||||||||||||||||| |||||||| | ||||| ||||||| |
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|
| T |
17494841 |
cttatttgttgtcttggtcgatgaaaattttagaaaatacaatgaagcttgttgtgatggttttccaaatcc |
17494770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 323 - 466
Target Start/End: Original strand, 37874557 - 37874700
Alignment:
| Q |
323 |
ccccaattaatttccttcagaaccaacgtcaaattaactatcctatacaattttagttctcttcttgtttgttgccttggcatatgcaaattttagaaaa |
422 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||| ||||| |||||||||| |||| | |
|
|
| T |
37874557 |
ccccaatttatttccttcagaaccaaaatcaaattaattatcctgtacaattttatttctcttcttgtttgttgtattggccgatgcaaatttcagaaga |
37874656 |
T |
|
| Q |
423 |
tacaatgaagtttgttgtggtagtttttcaaatccgaatttgtt |
466 |
Q |
| |
|
|| ||||||| |||||||||| ||||||| || ||||| |||| |
|
|
| T |
37874657 |
taaaatgaagcttgttgtggtgatttttcagattcgaatatgtt |
37874700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 244
Target Start/End: Complemental strand, 17199081 - 17198931
Alignment:
| Q |
92 |
tttattcttcaactaaattaggaaattaattttgttcaattttgcttattatgactatgaagttacaatcttatcttgtatgaatataaataaaggataa |
191 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||||||||| |||| || || |||| ||||||||||||||||||||| ||||||||||||| || ||| |
|
|
| T |
17199081 |
tttattcatcaactagattagggaattaattttgttcagttttactaatgatgatgatgaagttacaatcttatcttatatgaatataaat--cgggtaa |
17198984 |
T |
|
| Q |
192 |
tcgctagtttgcaatcttattttatatgttcaaaacaaaatcttagtataaac |
244 |
Q |
| |
|
| ||||| || ||||||||| || ||||||||||| ||||||| |||||||| |
|
|
| T |
17198983 |
tagctagcttacaatcttatcttgtatgttcaaaagaaaatctcggtataaac |
17198931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 328
Target Start/End: Original strand, 37874450 - 37874536
Alignment:
| Q |
243 |
actataaacataagatactataatgaaatgatttaacataacaattactcagtaaaa-acttatcaaaataaatcataactccccaa |
328 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
37874450 |
actataaacataagatactacaatcaaatgatttaacataacaattaccgagtaaaatgcttatcaaaataaatcctaactccccaa |
37874536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 17198924 - 17198872
Alignment:
| Q |
219 |
gttcaaaacaaaatcttagtataaactataaacataagatactataatgaaat |
271 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| ||| |||||| |||| |
|
|
| T |
17198924 |
gttcaaaacaaaatcttagtataaaatataaacctaaaatagtataattaaat |
17198872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 323 - 466
Target Start/End: Original strand, 9574173 - 9574316
Alignment:
| Q |
323 |
ccccaattaatttccttcagaaccaacgtcaaattaactatcctatacaattttagttctcttcttgtttgttgccttggcatatgcaaattttagaaaa |
422 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||||| |||||| | |||||||| |||||||||||||||||| ||||| |||||||||| |||| | |
|
|
| T |
9574173 |
ccccaatttattttcttcagaaccaaaatcaaattaattatcctgtgcaattttatttctcttcttgtttgttgtattggccgatgcaaatttcagaaga |
9574272 |
T |
|
| Q |
423 |
tacaatgaagtttgttgtggtagtttttcaaatccgaatttgtt |
466 |
Q |
| |
|
|| |||||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
9574273 |
taaaatgaagtttgttgtggtgatttttcatatccgaatctgtt |
9574316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 328
Target Start/End: Original strand, 9574066 - 9574152
Alignment:
| Q |
243 |
actataaacataagatactataatgaaatgatttaacataacaattactcagtaaaa-acttatcaaaataaatcataactccccaa |
328 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
9574066 |
actataaacataagatactacaatcaaatgttttaacataacaattacccagtaaaatgcttatcaaaataaatcctaactccccaa |
9574152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 323 - 461
Target Start/End: Original strand, 5276993 - 5277131
Alignment:
| Q |
323 |
ccccaattaatttccttcagaaccaacgtcaaattaactatcctatacaattttagttctcttcttgtttgttgccttggcatatgcaaattttagaaaa |
422 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||||| |||||| | |||||||| |||||||||||||||||| ||||| |||||||||| |||||| |
|
|
| T |
5276993 |
ccccaatttattttcttcagaaccaaaatcaaattaattatcctgtgcaattttatttctcttcttgtttgttgtattggccgatgcaaatttcagaaaa |
5277092 |
T |
|
| Q |
423 |
tacaatgaagtttgttgtggtagtttttcaaatccgaat |
461 |
Q |
| |
|
|| ||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
5277093 |
taaaatgaagcttgttgtggtgatttttcagatccgaat |
5277131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 5276890 - 5276972
Alignment:
| Q |
247 |
taaacataagatactataatgaaatgatttaacataacaattactcagtaaaa-acttatcaaaataaatcataactccccaa |
328 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
5276890 |
taaacataagatactacaatcaaatgttttaacataacaattacccagtaaaatgtttatcaaaataaatcctaactccccaa |
5276972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 335
Target Start/End: Complemental strand, 36476493 - 36476369
Alignment:
| Q |
203 |
caatcttattttatatgttcaaaacaaaatcttagtataaactataaacataagatactataatgaaatgatttaacataacaattactcagtaaaaact |
302 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| ||||||||| |||| |||||||||| |||||||||||||||| ||||||||||||| || |
|
|
| T |
36476493 |
caatcttattttacatgtttaaaacaaaatctcagtataaac-------ataa-atactataattaaatgatttaacataattgttactcagtaaaagct |
36476402 |
T |
|
| Q |
303 |
tatcaaaataaatcataactccccaattaattt |
335 |
Q |
| |
|
||||||| |||||| ||||| |||||| |||| |
|
|
| T |
36476401 |
tatcaaagtaaatccgaactctccaatttattt |
36476369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 36476546 - 36476485
Alignment:
| Q |
104 |
ctaaattaggaaattaattttgttcaattttgcttattatgactatgaagttacaatcttat |
165 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
36476546 |
ctaaattagggaattagttttgttcagttttgctagttatgattatcaagttacaatcttat |
36476485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 365
Target Start/End: Original strand, 47523529 - 47523683
Alignment:
| Q |
203 |
caatcttattttatatgttcaaaacaaaatcttagtataaactataaacataagatactataatgaaatgatttaacataacaattactcagtaaaaact |
302 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| ||||||||| |||| |||||||||| |||||||||||||||| ||||||||||||| || |
|
|
| T |
47523529 |
caatcttattttatatgtttaaaataaaatctcagtataaac-------ataa-atactataattaaatgatttaacataattgttactcagtaaaagct |
47523620 |
T |
|
| Q |
303 |
tatcaaaataaatcataactccccaattaatttccttcagaaccaacgtcaaattaactatcc |
365 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||||||| |||| ||| ||||||||| ||||| |
|
|
| T |
47523621 |
tatcaaaataaatcctaactctccaatttatttccttgagaatcaaaatcaaattaattatcc |
47523683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 328
Target Start/End: Complemental strand, 55159733 - 55159647
Alignment:
| Q |
243 |
actataaacataagatactataatgaaatgatttaacataacaattactcagtaaaa-acttatcaaaataaatcataactccccaa |
328 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
55159733 |
actataaacataagatactacaatcaaatgatttaacataacaattacccaataaaatgcttatcaaaataaatcctaactccccaa |
55159647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 323 - 466
Target Start/End: Complemental strand, 55159626 - 55159478
Alignment:
| Q |
323 |
ccccaattaatttccttcagaaccaacgtcaaattaactatcctatacaattttagttc-----tcttcttgtttgttgccttggcatatgcaaatttta |
417 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||||||| ||||| |||||||||| | |
|
|
| T |
55159626 |
ccccaatttatttctttcagaaccaaaatcaaattaattatcctatacaattttgtttctcttatcttcttgtttgttgtattggccgatgcaaatttca |
55159527 |
T |
|
| Q |
418 |
gaaaatacaatgaagtttgttgtggtagtttttcaaatccgaatttgtt |
466 |
Q |
| |
|
||| ||| ||||||| |||||||||| ||||||| ||| |||| |||| |
|
|
| T |
55159526 |
gaagataaaatgaagcttgttgtggtgatttttcagatctgaatctgtt |
55159478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 47523476 - 47523537
Alignment:
| Q |
104 |
ctaaattaggaaattaattttgttcaattttgcttattatgactatgaagttacaatcttat |
165 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
47523476 |
ctaaattagggaattagttttgttcagttttgctagttatgattatcaagttacaatcttat |
47523537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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