View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4411_low_13 (Length: 482)

Name: NF4411_low_13
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4411_low_13
NF4411_low_13
[»] chr1 (6 HSPs)
chr1 (169-444)||(32772843-32773126)
chr1 (169-214)||(27746084-27746129)
chr1 (5-107)||(32772680-32772781)
chr1 (237-284)||(2261500-2261547)
chr1 (237-275)||(27746115-27746153)
chr1 (353-428)||(12155248-12155323)
[»] chr5 (1 HSPs)
chr5 (250-284)||(39937876-39937910)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 169 - 444
Target Start/End: Original strand, 32772843 - 32773126
Alignment:
Q  169 tgtgattcggtgtatatggtgaataataagatatatgaactcaattctttcaacnnnnnnnnntaaagtatatgaacccaattaatctaatggctcttat 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||          |||| ||||||||| ||||||||||||||||||||||    
T  32772843 tgtgattcggtgtatatggtgaataataagatatatgaactcaattctttcaa----aaaaaataaactatatgaactcaattaatctaatggctcttat 32772938  T
Q  269 tgttatttatggtggta------------atttaattaaaccctcactctagaatccacttataataatattagtcattttaatctcatgaatgtcttgt 356  Q
    ||||||||||||||||             ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32772939 tgttatttatggtggtccaccggtgtgtgatttaattaaaccctcactctagaatccacttaaaataatattagtcattttaatctcatgaatgtcttgt 32773038  T
Q  357 ttatggtattttaaatattgtccattaatttacatttcttgattgctcaaacctatatcttgaatcaaatatgcattattagaagaag 444  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32773039 ttatggtattttaaatattgtccattaatttacatttctcgattgctcaaacctatatcttgaatcaaatatgcattattagaagaag 32773126  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 27746084 - 27746129
Alignment:
Q  169 tgtgattcggtgtatatggtgaataataagatatatgaactcaatt 214  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  27746084 tgtgattcggtgtatatggtgtataataagatatatgaactcaatt 27746129  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 32772680 - 32772781
Alignment:
Q  5 gagtgatactgctctgaaatatgtcatgagnnnnnnnnnncaataaaactcattgatttgtggttgttaccatcaccaccattctagccgttgagattaa 104  Q
    ||||||||||| ||| ||||||||||||||          || ||||||| |||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  32772680 gagtgatactgttctaaaatatgtcatgagttttttttctcagtaaaactgattgatttgtggttgttaccatcactgccattctag-cgttgagattaa 32772778  T
Q  105 ttt 107  Q
    |||    
T  32772779 ttt 32772781  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 2261500 - 2261547
Alignment:
Q  237 tatatgaacccaattaatctaatggctcttattgttatttatggtggt 284  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  2261500 tatatgaactcaattaatctaatggctcttattgttattcatggtggt 2261547  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 27746115 - 27746153
Alignment:
Q  237 tatatgaacccaattaatctaatggctcttattgttatt 275  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  27746115 tatatgaactcaattaatctaatggctcttattgttatt 27746153  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 428
Target Start/End: Original strand, 12155248 - 12155323
Alignment:
Q  353 ttgtttatggtattttaaatattgtccattaatttacatttcttgattgctcaaacctatatcttgaatcaaatat 428  Q
    |||||||| ||||||||||||||| ||||| ||| | |||||| |||| ||| |||  |||||| |||||||||||    
T  12155248 ttgtttatagtattttaaatattgcccattgattgatatttctcgattactctaacaaatatctcgaatcaaatat 12155323  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 284
Target Start/End: Original strand, 39937876 - 39937910
Alignment:
Q  250 ttaatctaatggctcttattgttatttatggtggt 284  Q
    |||||||||||||||||||||||||| ||||||||    
T  39937876 ttaatctaatggctcttattgttattcatggtggt 39937910  T

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