View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4411_low_15 (Length: 429)
Name: NF4411_low_15
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 23472472 - 23472303
Alignment:
| Q |
18 |
attgacacatgtagtaatttaagaaaataatgtaattgacttacacggacactggcacatcgacactgtagtaatttaagaaaataacgtaattgaatgt |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23472472 |
attgacacctgtagtaatttaagaaaataatttaattgacttacactggcactggcacatcgacactgtagtaatttaagaaaataatgtaattgaatgt |
23472373 |
T |
|
| Q |
118 |
gatgtaattgcatgtgttggatagcagacacgcctttgatttgaagagtcattgctacagtgttcaattg |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23472372 |
gatgtaattgcatgtgttggatagcagacacgcctttgatttgaagagtcattgctacagtgttcaattg |
23472303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 268 - 421
Target Start/End: Complemental strand, 23472304 - 23472148
Alignment:
| Q |
268 |
tggtttatcttgtttgcatgttcatggt---ttttagttcattgtttggaagatgatgattttcttgtttaaaatgagattttcatgtaaggattaacgt |
364 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23472304 |
tggtttatcttgtttgcatgttcatggtggtttttagttcattgtttggaagatgatgattttcttgtttaaaatgagattttcatgtaaggattaacgt |
23472205 |
T |
|
| Q |
365 |
tatgaacatgtcttggattatgtgtcttgtattgctaaatgtaaggatgatgatgtc |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
23472204 |
tatgaacatgtcttggattatgtgtcttgtattactaaatgtaaggatcttgatgtc |
23472148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 598189 - 598247
Alignment:
| Q |
60 |
acacggacactggcacatcgacactg-tagtaatttaagaaaataacgtaattgaatgt |
117 |
Q |
| |
|
|||||||||||| ||||||||||| | || |||||||||||||| |||||||| ||||| |
|
|
| T |
598189 |
acacggacactgacacatcgacaccgctaataatttaagaaaatcacgtaattaaatgt |
598247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 43160490 - 43160523
Alignment:
| Q |
84 |
tgtagtaatttaagaaaataacgtaattgaatgt |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
43160490 |
tgtagtaatttaagaaaataacataattgaatgt |
43160523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University