View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_low_16 (Length: 425)
Name: NF4411_low_16
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 35830 - 35424
Alignment:
| Q |
1 |
gtttgaaaacaatgtgacaaattgtcatttttcaaaagaatagacatgaaaggagacaaaaagggacaagtgatttcaatcaagtgataaaaggttataa |
100 |
Q |
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| T |
35830 |
gtttgaaaacaatgtcacaaattgtcatttttcaaaagaatagacatgaaaggagacaaaaagggacaagtgatttcaatcaagtgataaaaggttataa |
35731 |
T |
|
| Q |
101 |
ttaacaactttatatcctaggtgtatatcatatgggttgttatccaagtatgaaggtccttacaaaatacatataaaaactgaatgaaagtagttgatga |
200 |
Q |
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| T |
35730 |
ttaacaactttatatcctaggtgtatatcatatgggttgttatccaagtatgaaggtccttacaaaatacatataaaaactgaatgaaagtagttgatga |
35631 |
T |
|
| Q |
201 |
ataaagaaagaacgaaagaataatacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaattggcgaccatagaga |
300 |
Q |
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| T |
35630 |
ataaagaaagaacgaaagaaaaatacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaattggcgaccatagaga |
35531 |
T |
|
| Q |
301 |
accaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaacagcaaaatggcagcc |
400 |
Q |
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| T |
35530 |
accaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaacagcaaaatggcagcc |
35431 |
T |
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| Q |
401 |
agttaac |
407 |
Q |
| |
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||||||| |
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| T |
35430 |
agttaac |
35424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 223 - 391
Target Start/End: Original strand, 8677160 - 8677325
Alignment:
| Q |
223 |
atacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaattggcgaccatagagaaccaaagaagctcccacatagg |
322 |
Q |
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||||||||||||||||||| || || ||||| ||||| || ||||| | |||||||| | |||||| || ||||||||||| ||||||||||| ||| |
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| T |
8677160 |
atacttggtagaatccaacggaattgagcatgaggctcaagttcatcccggtgatagatatattggcaacagcagagaaccaaataagctcccacaaagg |
8677259 |
T |
|
| Q |
323 |
gacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaacagcaaa |
391 |
Q |
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|||||||| |||| || |||||||||||||| |||| | ||| || ||||| ||||||||||| |
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| T |
8677260 |
aacatgctt---agaagcagaataaccggtagcatttgagacgagaccgacaagagcagtaacagcaaa |
8677325 |
T |
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