View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_low_17 (Length: 419)
Name: NF4411_low_17
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 45744997 - 45745374
Alignment:
| Q |
19 |
acctaaatccataggggacttctacaaattgttaagtagacattgtttctagcattcagcttcacaaattagtccgcacaagaattacattcaccataga |
118 |
Q |
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| T |
45744997 |
acctaaattcataggagacttctacaaattgttaagtagacattgtttctagcattcagcttcacaaattagtccgcacaagaattacattcaccataaa |
45745096 |
T |
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| Q |
119 |
tgtgagatatatgcacctgtcaattacactgcaaagcaacctcattaccatatatatataaatgatatgatgtgtttgcctcgttgaggagtctgatggt |
218 |
Q |
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| T |
45745097 |
tgtgagatatatgcacctgtcaattaaactgcaaagcaacctcattacc--atatatataaatgatatgatgtgtttgcctcgttgaggagtctaatggt |
45745194 |
T |
|
| Q |
219 |
ttccaattaatcagaaaagtactaaacattcgggcacccctccctcgtcccaacacaacttaataccagtaagcaagcccataaactcaggatgaatgat |
318 |
Q |
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| T |
45745195 |
ttccaattaatcaggaaagtactaaacattcgggcac--------agggccaacacaacttaataccagtaagcaagcccataaactcaggatgaatgat |
45745286 |
T |
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| Q |
319 |
gttagaccaaccaacatatccactaaagcaaaacatgaatcaaccttcatgattttggacgatatatacctccaaacctgccgcacct |
406 |
Q |
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| T |
45745287 |
gttagaccaaccaacatatccactaaagctaaacatgaatcaaccttcattattttggacgatatatacctccaaacctgccgcacct |
45745374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 46775325 - 46775218
Alignment:
| Q |
38 |
ttctacaaattgttaagtagacattgtttctagcattcagcttcacaaattagtccgcacaagaattacattcaccatagatgtgagatatatgcacctg |
137 |
Q |
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| T |
46775325 |
ttctacaaactgtgaggtcgacattgtttctagcacccgtcttcacaaaccagtccgcacaagaattaccttcgcggtagatgtgagatatatgcacctg |
46775226 |
T |
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| Q |
138 |
tcaattac |
145 |
Q |
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||||||| |
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| T |
46775225 |
ccaattac |
46775218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 31180210 - 31180085
Alignment:
| Q |
20 |
cctaaatccataggggacttctacaaattgttaagtagacattgtttctagcattcagcttcacaaattagtccgcacaagaattacattcaccatagat |
119 |
Q |
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| T |
31180210 |
cctaaatctgtagggggtttctacaaactgtgaggtcgacattgtttctagcacccgtcttcgcaaactagtccgcacaagaattaccttcgcagtagat |
31180111 |
T |
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| Q |
120 |
gtgagatatatgcacctgtcaattac |
145 |
Q |
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| T |
31180110 |
gtaagatatatgcacctgccaattac |
31180085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 24082611 - 24082555
Alignment:
| Q |
89 |
agtccgcacaagaattacattcaccatagatgtgagatatatgcacctgtcaattac |
145 |
Q |
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| T |
24082611 |
agtccgcacaagaattaccttcgcggtagatgtgagatatatgcacctgccaattac |
24082555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 31179614 - 31179721
Alignment:
| Q |
266 |
tcccaacacaacttaataccagtaagcaagcccataaactcaggatgaatgatgttagaccaaccaacatatccactaaagcaaaacatgaatcaacctt |
365 |
Q |
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|||||||||||| ||||| ||||||| ||||| ||||| | || | ||| ||||||||||||||| |||||||||| | || |||||||| ||||| |
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| T |
31179614 |
tcccaacacaacaacatacctttaagcaaacccatcaactcggcatacaagatattagaccaaccaacagatccactaaacccaagcatgaatcgacctt |
31179713 |
T |
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| Q |
366 |
catgattt |
373 |
Q |
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|||||||| |
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| T |
31179714 |
catgattt |
31179721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 9405553 - 9405660
Alignment:
| Q |
38 |
ttctacaaattgttaagtagacattgtttctagcattcagcttcacaaattagtccgcacaagaattacattcaccatagatgtgagatatatgcacctg |
137 |
Q |
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||||||||| || |||| |||||||||||||||| | |||| |||| ||| |||||||||||||| ||| | ||||||||||||||||||||||| |
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| T |
9405553 |
ttctacaaactgcgaagtcgacattgtttctagcacccgtcttcgcaaaccagttcgcacaagaattaccttcgcggtagatgtgagatatatgcacctg |
9405652 |
T |
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| Q |
138 |
tcaattac |
145 |
Q |
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||||||| |
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| T |
9405653 |
ccaattac |
9405660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 38416619 - 38416536
Alignment:
| Q |
287 |
gtaagcaagcccataaactcaggatgaatgatgttagaccaaccaacatatccactaaagcaaaacatgaatcaaccttcatgatt |
372 |
Q |
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|||||||||||||| ||||||| ||| |||||||| ||||||||||| ||||||||||| || ||||||| | |||||||||| |
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| T |
38416619 |
gtaagcaagcccatcaactcagcatgcatgatgtt--accaaccaacagatccactaaagtcaagcatgaattgatcttcatgatt |
38416536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 38416804 - 38416764
Alignment:
| Q |
96 |
acaagaattacattcaccatagatgtgagatatatgcacct |
136 |
Q |
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| T |
38416804 |
acaagaattaccttcgccatagatgtgagatatatgcacct |
38416764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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