View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_low_19 (Length: 396)
Name: NF4411_low_19
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 39689492 - 39689697
Alignment:
| Q |
1 |
ttcattcaaatcccctttttattcaccaaactctctgtaataatatatagtctatcttt--agtcttaataactattactttttgtctctcaaataaatt |
98 |
Q |
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| T |
39689492 |
ttcattcaaatcccctttttattcaccaaactctctgtaataatatatagtctatctttttagtcttaataactattactttttgtctctcaaataaatt |
39689591 |
T |
|
| Q |
99 |
ttcgtcagctttcgacctctannnnnnnggggtatgtagaatggaatatgtgttttggttagacataatttaacatgttaatagtctcgtgactttggtc |
198 |
Q |
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| T |
39689592 |
ttcgtcagctttcgacctctatttttttggggtatgtagaatggaatatgtgttttggttagacataatttaacatgttaatagtctcgtgactttggtc |
39689691 |
T |
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| Q |
199 |
ggtaga |
204 |
Q |
| |
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||||| |
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| T |
39689692 |
agtaga |
39689697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 199 - 349
Target Start/End: Original strand, 39690884 - 39691036
Alignment:
| Q |
199 |
ggtagatatactgcctgcgatatgcagagtttgagttttgaatcctcaattttttatgtattcattttaaaggatgaatt-ctaatcaatataccacttg |
297 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||| |||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
39690884 |
ggtagaaatactgcctgcgatatgcagagtt-gagttttgaatcctgaattttctatgtatttattttaaaggatgaatttctaatcaatataccacttg |
39690982 |
T |
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| Q |
298 |
aactaaagaaaatgtaacatattaattaaa--atgtgtcgttttagtaataaaa |
349 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
39690983 |
aactaaagaaaatgtaacatattaattaaaatatgtgtcgttttagtaaaaaaa |
39691036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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