View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_low_2 (Length: 717)
Name: NF4411_low_2
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 18 - 704
Target Start/End: Original strand, 39058536 - 39059219
Alignment:
| Q |
18 |
gattcaaggtctcttggccatggtatttccaacgtagaaacatgttatgacccctggtgtgtaggactgaatcagaggcctagacaagtgcagctaacaa |
117 |
Q |
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| T |
39058536 |
gattcaaggtctcttggccatggtatttccaacgtagaaacatgttatgacccctggtgtgtaggactgaatcagaggcctagacaagtgcagctaacaa |
39058635 |
T |
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| Q |
118 |
ttacagtcactaacaattaccctcattgataaaactcataactataatgtatgatgatacaagataaagcaagtcaaatcagtaacaagactcccctttt |
217 |
Q |
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| T |
39058636 |
ttatagtcactaacaattaccctcattgataaaactcataactataatgtatgatgatacaagataaagcaagtcaaatcagtaacaagactcccctttt |
39058735 |
T |
|
| Q |
218 |
tggatttgagctagttctcaatctcaaactcttgataaacttcttgaactcaacatattaggcaatactataggcttagttgcagttccaatttattctt |
317 |
Q |
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| T |
39058736 |
tggatttgagctagttctcaatctcaaactcttgataaacttcttgaactcaacatattaggcaatactataggcttagttgcagttccaatttattctt |
39058835 |
T |
|
| Q |
318 |
ccctatttctccttcatccatgtgtcgtctactgctgcgttgattgattttgctttgctcttgctctgcagctgagttgaagaaaacctccaaatcgaag |
417 |
Q |
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| T |
39058836 |
ccctatttct---tcatccatgtgtcgtctactgctgcgttgattgattttgctttgctcttgctctgcagctgagttgaagaaaacctccaaatcgaag |
39058932 |
T |
|
| Q |
418 |
aggaagccatctgtcaagtcgttgtttggtaagcttacttcttttttgacattttgtttccttcaaattcaaatctttcttttgctggtaatactaactc |
517 |
Q |
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| T |
39058933 |
aggaagccatctgtcaagtcgttgtttggtaagcttacttcttttttgacattttgtttccttcaaattcaaatctttcttttgctggtaatactaactc |
39059032 |
T |
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| Q |
518 |
ttctcttccaatcaaaccggggtgacataatagatggtgtgttggagacttctgaggtgtctgatacttcagaagtgtctgcaagcaatccacctactaa |
617 |
Q |
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| T |
39059033 |
ttctcttccaatcaaaccggggtgacataatagatggtgcgttggagacttctgaggtgtctgatacttcagaagtgtctgcaagcaatccacctactaa |
39059132 |
T |
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| Q |
618 |
atgaagtttataaatcccttgacactcaaattagtagtatctcaaagcttgaaggaatcttcctcctaacaaggagtctctgatgat |
704 |
Q |
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| T |
39059133 |
atgaagtttataaatcccttgacactcaaattagtagtatctcaaagcttgaaggaatcttcctcctaacaaggagtctctgatgat |
39059219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 509 - 577
Target Start/End: Original strand, 18985648 - 18985716
Alignment:
| Q |
509 |
tactaactcttctcttccaatcaaaccggggtgacataatagatggtgtgttggagacttctgaggtgt |
577 |
Q |
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| T |
18985648 |
tactaactcctctcttccaatcaaactgggatgatataatagatggtgtgctggagacttatgaagtgt |
18985716 |
T |
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