View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_low_20 (Length: 395)
Name: NF4411_low_20
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 31 - 384
Target Start/End: Original strand, 46734829 - 46735183
Alignment:
| Q |
31 |
aaaacaaaaactcaagtcatactctagcttgctcttgaatannnnnnnnnnnnagatttctcactgaattgttatgtttaattttctagtgaaagtgttg |
130 |
Q |
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|||| |||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46734829 |
aaaaaaaaaactcaagtcatagtctaacttgctcttgaatattttttgtttttagatttctcactgaattgttatgtttaattttctagtgaaagtgttg |
46734928 |
T |
|
| Q |
131 |
gactggggtgaggatggtgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaacttgatcattcaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46734929 |
gactggggtgaggatggtgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaacttgatcattcaa |
46735028 |
T |
|
| Q |
231 |
atgtcacaaaagtataaacttaatatccttcacactctcatttatttaaattcataattactaataaacttttgtatgcttatttttctcctttccttta |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46735029 |
atgtcacaaaagtataaacttaatatccttcacactctcatttatttaaattcatgattactaataaacttttgtatgcttatttttctcctttccttta |
46735128 |
T |
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| Q |
331 |
tgatgtggaactatagga-ttttattttttaaagcgtagttttgtaattgttcat |
384 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46735129 |
tgatgtggaactataggatttttattttttaaagcgtagttttgtaattgttcat |
46735183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 175 - 384
Target Start/End: Complemental strand, 19411404 - 19411190
Alignment:
| Q |
175 |
tttacgagcatcatttcggcaggaggttactgtgtggcaaaaacttgatcattcaaatgtcacaaaagtataaacttaatatccttcacactctcattta |
274 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19411404 |
tttacgagcatcatttcggcaggaggttactgtgtagcaaaaacttgatcattcaaatgtcacaaaagtacaaacttaatatccttcacactctcattta |
19411305 |
T |
|
| Q |
275 |
tttaaattcataattacta-ataaact--tttgtatgcttatttttctcctttcctttatgatgtggaactatagga-ttttat-tttttaaagcgtagt |
369 |
Q |
| |
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||||||||||| ||||||| |||| | ||||||| ||||||||||||||||||||||||| ||||| || ||||| |||||| ||||||| || |||| |
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| T |
19411304 |
tttaaattcatgattactacttaaaataatttgtattcttatttttctcctttcctttatgaggtggagctgtaggatttttatatttttaacgcatagt |
19411205 |
T |
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| Q |
370 |
tttgtaattgttcat |
384 |
Q |
| |
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||| ||||||||||| |
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| T |
19411204 |
tttataattgttcat |
19411190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 984366 - 984492
Alignment:
| Q |
118 |
agtgaaagtgttggactggggtgaggatggtgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaa |
217 |
Q |
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||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||| ||||| ||| ||||||||||| | || ||||| ||| |
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| T |
984366 |
agtgaaagtgttggattggggtgaggatggtgctgccaccgctgcagaaactgctgctttacgtgcatcttttaggcaggaggttgccgtctggcacaaa |
984465 |
T |
|
| Q |
218 |
cttgatcattcaaatgtcacaaaagta |
244 |
Q |
| |
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|| || ||| |||||||||| |||||| |
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| T |
984466 |
ctcgaccatccaaatgtcactaaagta |
984492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 244
Target Start/End: Original strand, 37222641 - 37222765
Alignment:
| Q |
120 |
tgaaagtgttggactggggtgaggatggtgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaact |
219 |
Q |
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||||||||||||| |||||||||||||||| |||||| ||||| |||||||| |||||||| ||||| ||| ||||||||||| | || ||| | ||||| |
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| T |
37222641 |
tgaaagtgttggattggggtgaggatggtgctgccaccgctgcggaaactgccgctttacgtgcatcctttaggcaggaggttgccgtctggtacaaact |
37222740 |
T |
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| Q |
220 |
tgatcattcaaatgtcacaaaagta |
244 |
Q |
| |
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|| ||| |||||| ||| |||||| |
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| T |
37222741 |
cgaccatccaaatgccacgaaagta |
37222765 |
T |
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