View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_low_21 (Length: 387)
Name: NF4411_low_21
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 371
Target Start/End: Complemental strand, 12748965 - 12748606
Alignment:
| Q |
12 |
atgaagctagaagaagaagagaagatggtattactaattaatagcaggtctgttaatgaaaaactgaagatctagcactgcaagacagaggagcaagttg |
111 |
Q |
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| T |
12748965 |
atgaagctagaagaagaagagaagatggaattactaattgatagcaggtctgttaatgacaaactgaagatctagcactgcaagacagaggagcaagttg |
12748866 |
T |
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| Q |
112 |
caaacttacttaacaaagcctttgaagactaacatctttgaatacttgagaaacaagttataaatggttaaaacctctaactaatgaattaggaggtgta |
211 |
Q |
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| T |
12748865 |
caaacttacttaccaaagcctttgaagactaacaactttgaatacttgagaaacaagttataaatggttaaaacctctaaataatgaattaggaggtgta |
12748766 |
T |
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| Q |
212 |
ttacgagtttaataaattcagttagttagagtttatattttcagttagttagaagttgaggaaaaacaagggtaaacttgttggttaactaaaccgaaga |
311 |
Q |
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| T |
12748765 |
ttaggagtttaataaattcagttagttagagtttatattttgagttagttagaagttgagggaaaacaagggtaaacttgttggttaagtaaaccgaaga |
12748666 |
T |
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| Q |
312 |
taactagtttgttataaagtttgttacagttttgtatataaatacttatgcctagttact |
371 |
Q |
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| T |
12748665 |
taactagtttgttataaagtttgtaacagttttgtatataaatacttatgcctagttact |
12748606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 219 - 374
Target Start/End: Original strand, 10991878 - 10992035
Alignment:
| Q |
219 |
tttaataaattcagttagttagag--tttatattttcagttagttagaagttgaggaaaaacaagggtaaacttgttggttaactaaaccgaagataact |
316 |
Q |
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| T |
10991878 |
tttaataaattcagttagttagagagtttatcatttgagttagttaaaagtcgag-aaaaacaagggttaacttgtcggttaagtaaacttaagataact |
10991976 |
T |
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| Q |
317 |
agtttgttataaagtttgttacag-ttttgtatataaatacttatgcctagttactgat |
374 |
Q |
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| T |
10991977 |
agtttgtaatagttttttttacagtttttgtatataaatacctatgcctagttgctgat |
10992035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 17342746 - 17342873
Alignment:
| Q |
86 |
gcactgcaagacagaggagcaagttgcaaacttacttaacaaagcctttgaagactaacatctttgaatacttgagaaacaagttataaatggttaaaac |
185 |
Q |
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| T |
17342746 |
gcactgcaagacagaagatcaagttgtagacttgct-aacaaagccattaaagattagcagctttgagtacttgaggaataggctaggaatgtcaaaaac |
17342844 |
T |
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| Q |
186 |
ctctaactaatgaattaggaggtgtatta |
214 |
Q |
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| T |
17342845 |
ttctaactaatgaattaggaggtgtatta |
17342873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 11352538 - 11352411
Alignment:
| Q |
86 |
gcactgcaagacagaggagcaagttgcaaacttacttaacaaagcctttgaagactaacatctttgaatacttgagaaacaagttataaatggttaaaac |
185 |
Q |
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||||| |||||||| |||||||||||| |||| |||| ||||||| ||||||| || || |||| | |||||||| || |||| |||||| ||| |
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| T |
11352538 |
gcactacaagacaggagagcaagttgcagacttgctta-caaagccattgaagattagcagctttcagtacttgaggaatgagttgggaatggtagaaat |
11352440 |
T |
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| Q |
186 |
ctctaactaatgaattaggaggtgtatta |
214 |
Q |
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|| || || |||||||||||||||||||| |
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| T |
11352439 |
ctgtacctgatgaattaggaggtgtatta |
11352411 |
T |
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