View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4411_low_27 (Length: 304)
Name: NF4411_low_27
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 15995416 - 15995641
Alignment:
| Q |
19 |
aaaagagactggcaagggtaaaagtgacagaataagagacataattatattttacagtaaaagtcggtaaatgaaaagactggtgcggaagagaagagaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
15995416 |
aaaagagactggcaagggtaaaagtgacagaataagagacataattatattttacagtgaaagtgggtaaatgaaaagactggtgtggaagagaagagaa |
15995515 |
T |
|
| Q |
119 |
gcaacggtggttaggtatggcggtgagggatacgattgaggaagatgaagctatgaggtgattactggcttacgataaaagaagaggaagcaaagtttta |
218 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15995516 |
gcaacggtggttagatatggcgctgagggatacgattgaggaagatgaagctatgaggtgattactggcttacgatagaagaagaggaagcaaagtttta |
15995615 |
T |
|
| Q |
219 |
annnnnnnnaattaaaaattacatgt |
244 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
15995616 |
attttttttaattaaaaattacatgt |
15995641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 1856666 - 1856728
Alignment:
| Q |
232 |
aaaaattacatgtttattttaaatctgaactgttgaatccttttttgccataagtcattcatc |
294 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||| | |||||||||| |
|
|
| T |
1856666 |
aaaaaatacatgtttattttaaatctgaaccattgaatccttttttgccacatgtcattcatc |
1856728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 55203730 - 55203685
Alignment:
| Q |
31 |
caagggtaaaagtgacagaataagagacataattatattttacagt |
76 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55203730 |
caagggtaaaagtggcagaataagagacataattatattttacagt |
55203685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 55203645 - 55203585
Alignment:
| Q |
75 |
gtaaaagtcggtaaatgaaaagactggtgcggaagagaagagaagcaacggtggttaggta |
135 |
Q |
| |
|
|||||||| |||||||||| | |||||| |||||||||||||| ||| ||||||| |||| |
|
|
| T |
55203645 |
gtaaaagtgggtaaatgaatcgtctggtgtggaagagaagagaaacaatggtggtttggta |
55203585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University