View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_low_3 (Length: 627)
Name: NF4411_low_3
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 49 - 552
Target Start/End: Original strand, 6752627 - 6753129
Alignment:
| Q |
49 |
atgtggaagaaggaaggtatgaaatattggagcaagatacacatgtaatggctacggaagaaataagcaaaggatccaacatgtgtaataagcatgaaat |
148 |
Q |
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| T |
6752627 |
atgtggaagaaggaaggtatgaaatattggaccaagatacacatgtaatggctacggaagaaataagcaaaggatccaacatgtgtaataagcatgaaat |
6752726 |
T |
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| Q |
149 |
taataatacaagtggtgtccacataaataatgatggttccaaggctagtgcaaatgttaactccatggctatggaaacgacgtagactgaggtgcactac |
248 |
Q |
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| T |
6752727 |
taataatacaagtggtgtccacataaataaggatggttccaaggctagtgcaaatgtcaactccatggctatggaaacgacgtagactgaggtgcactac |
6752826 |
T |
|
| Q |
249 |
attcctatatttcactaaggtacttatgactagttttaatgatttatctattcttagttggaattataaggggtgccgttaataaggagggtaagagaca |
348 |
Q |
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| T |
6752827 |
attcctttatttcactaaggtacttatgactagttttaatgatttatctattcttagttggaa-tataaggggtgccgttaataaggagggtaagagacg |
6752925 |
T |
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| Q |
349 |
aacccgagtccttattaaaagatataaacctttacttgttgttcttatggagacgcactgtcagtttgctatagttaaaaatttctggtgtaacctaggc |
448 |
Q |
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| T |
6752926 |
aacccgagtccttattaaaagatataaacctttacttgttgttcttatggagacgcactgtcagttttctagagttaaaaatttctggtgtaacctaggc |
6753025 |
T |
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| Q |
449 |
tatgaggattgtgcaatttctgaagctcgtggacactctggagggatatggatattaaaatctcaaaattgcacatatgatattgagattatagataact |
548 |
Q |
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| T |
6753026 |
tatgaggattgtgcaatttctgaagctcgtggacactctggagggatatggatattaaaatctcaaaattgcacatatgatattgagattatagataact |
6753125 |
T |
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| Q |
549 |
attt |
552 |
Q |
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|||| |
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| T |
6753126 |
attt |
6753129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 195 - 552
Target Start/End: Complemental strand, 1811761 - 1811405
Alignment:
| Q |
195 |
agtgcaaatgttaactccatggctatggaaacgacgtagactgaggtgcactacattcctatatttcactaaggtacttatgactagttttaatgattta |
294 |
Q |
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| T |
1811761 |
agtgcaaatgttaattccatggctatggaaacgacgtagactgaggtgcactacattcctatatttcactaaggtacttatgactagttttaatgattta |
1811662 |
T |
|
| Q |
295 |
tctattcttagttggaattataaggggtgccgttaataaggagggtaagagacaaacccgagtccttattaaaagatataaacctttacttgttgttctt |
394 |
Q |
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| T |
1811661 |
tctattcttagttggaat-ataaggggtgccgttaataaggagggtaagagacaaacccgagtccttattaaaagatataaacctttacttgttgttctt |
1811563 |
T |
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| Q |
395 |
atggagacgcactgtcagtttgctatagttaaaaatttctggtgtaacctaggctatgaggattgtgcaatttctgaagctcgtggacactctggaggga |
494 |
Q |
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||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
1811562 |
atggagacgcactctcagttttctagagttaaaaatttctggtgtaacctaggctatgagaattgtgcaatttctgaagctcgtggacactctggaggta |
1811463 |
T |
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| Q |
495 |
tatggatattaaaatctcaaaattgcacatatgatattgagattatagataactattt |
552 |
Q |
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| T |
1811462 |
tatggatattaaaatctcaaaattgcacatatgatattgagattatagataactattt |
1811405 |
T |
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