View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4411_low_30 (Length: 268)
Name: NF4411_low_30
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 39689459 - 39689194
Alignment:
| Q |
1 |
aacaaagacaattaattagacaaagcaacccgtgaagtgcaagatatgttagcaagaatgactttgaagatctcaatatcacgtctgattctaagcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39689459 |
aacaaagacaattaattagacaaagcaacccgtgaagtgcaagatatgttagcaagaatgactttgaagatctcaatatcacgtctgattctaagcacac |
39689360 |
T |
|
| Q |
101 |
cttgttggtatccatattctttagcagattgttccaacaattcaacaattttgggatggtgaatcactttgatgctcacccaaatcctctccatatcttc |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39689359 |
cctgttggtatccatattctttagcagattgttccaacaattcaacaattttgggatggtgaatcactttgatgctcacccaaatcctctccatatcttc |
39689260 |
T |
|
| Q |
201 |
ttctt------cttcctttttccctactagcactggaacatgccctttgttactttgtttcatctc |
260 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39689259 |
ttcttcttcttcttcctttttgcctactagcactggaacatgccctttgttactttgtttcatctc |
39689194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 46 - 257
Target Start/End: Complemental strand, 39683949 - 39683744
Alignment:
| Q |
46 |
atgttagcaagaatgactttgaagatctcaatatcacgtctgattctaagcacaccttgttggtatccatattctttagcagattgttccaacaattcaa |
145 |
Q |
| |
|
||||||||||||||| |||| ||| |||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
39683949 |
atgttagcaagaatgtctttaaagtcgtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcagattgttctaagaattcaa |
39683850 |
T |
|
| Q |
146 |
caattttgggatggtgaatcactttgatgctcacccaaatcctctccatatcttcttcttcttcctttttccctactagcactggaacatgccctttgtt |
245 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || | ||| | ||||||||| ||||||||||||||||| |
|
|
| T |
39683849 |
caatttttggatgatgaatcactttgatgctcacccaaatcctctccatatcttctcctcc------tttgcttactagcaccggaacatgccctttgtt |
39683756 |
T |
|
| Q |
246 |
actttgtttcat |
257 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39683755 |
actttgtttcat |
39683744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University