View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4411_low_31 (Length: 255)
Name: NF4411_low_31
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 30256433 - 30256210
Alignment:
| Q |
15 |
agatgctcaccacttccagctaaagagaaagcataatcgtcatgtttccgttgctgttgaatattgcagtctccattttcctgtaaaacacagtacaaca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30256433 |
agatgctcaccacttccagctaaagagaaagcataatcgtcatgtttccgttgctgttgaatattgcagtctccattttcctgtaaaacacagtacaaca |
30256334 |
T |
|
| Q |
115 |
acaaagccttaatctcataatccttctgattacttacatagtccaatacacttacattcaatctaatgttattaatgttatagttataaaagttttatct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30256333 |
acaaagccttaatctcataatccttctgattacttacatagtccaatacacttacattcaatctaatgttattaatgttatagttataaaagttttatct |
30256234 |
T |
|
| Q |
215 |
aacagaaacaattaaagtcgaacc |
238 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
30256233 |
aacagaaacaattaaagtcgaacc |
30256210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University