View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_low_34 (Length: 249)
Name: NF4411_low_34
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 32772620 - 32772381
Alignment:
| Q |
1 |
taaagagaatagaaattcaattgtcctacatatgattattttatacaatcttgtgcttttggtgatggattttttcttgaatacacaaactttcgttaga |
100 |
Q |
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| T |
32772620 |
taaagagaatagaaattcaattgtcctacgtatgattattttatacaatcttgtgcttttggtgatggatttttccttgaatacacaaactttcgttaga |
32772521 |
T |
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| Q |
101 |
atttggaggcatttcttttggtttaatttttgggtatatgtgttattgtttgatataatttaccaatacactactagaacatggtaaccaaaccgccaac |
200 |
Q |
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| T |
32772520 |
atttggaggcatttcttttggtttaatttttgggtatatgtgttattgtttgatataatttaccaatacactactagaacatggtaaccaaaccgccaac |
32772421 |
T |
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| Q |
201 |
aagacacattgttgaactagttgatgaaggagagtataat |
240 |
Q |
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| T |
32772420 |
aagacacattgttgaactagttgatgaaggagagtataat |
32772381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 27746031 - 27745858
Alignment:
| Q |
76 |
cttgaatacacaaactttcgttagaatttggaggcatttcttttggtttaatttttgggtat-----------atgtgttattgtttgatataatttacc |
164 |
Q |
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| T |
27746031 |
cttgaatgcaccaactttcgttagaatttgtaggcatttcttttggtttaatttttgggtatttgtccaatatatgtgttattgtttgatataatttacc |
27745932 |
T |
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| Q |
165 |
aatacactactagaacatggtaaccaaaccgccaacaagacacattgttgaactagttgatgaaggagagtata |
238 |
Q |
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| T |
27745931 |
aatacattacaagaacatggtaaccaaaccgctaacaagacactttgttaaactacttgatgaagaagagtata |
27745858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 39937713 - 39937621
Alignment:
| Q |
11 |
agaaattcaattgtcctacatatgattattttatacaatcttgtgcttttggtgatggattttttcttgaatacacaaactttcgttagaatttg |
105 |
Q |
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| T |
39937713 |
agaaattcaattgtcgatcatatgattattt-atacaatcatgtgcttttgttgatgga-ttttccttgaatacaccaatttttgttagaatttg |
39937621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 18543642 - 18543543
Alignment:
| Q |
1 |
taaagagaatagaaattcaattgtcctacatatgattattttatacaatcttgtgcttttggtgatggattttttcttgaatacacaaactttcgttaga |
100 |
Q |
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|||||||| ||||||||||||||| ||| ||||||||| |||||| |||||||||| |||||||||||| ||||||||||| || ||| |||||| |
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| T |
18543642 |
taaagagagaagaaattcaattgtcgaacacatgattatt----acaatcatgtgcttttgttgatggattttt-cttgaatacaccaatttttgttaga |
18543548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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