View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4411_low_8 (Length: 523)

Name: NF4411_low_8
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4411_low_8
NF4411_low_8
[»] chr7 (12 HSPs)
chr7 (123-521)||(31627333-31627726)
chr7 (159-213)||(19683453-19683507)
chr7 (162-210)||(3837095-3837143)
chr7 (162-210)||(44235322-44235370)
chr7 (159-213)||(2525297-2525351)
chr7 (159-209)||(11991456-11991506)
chr7 (159-213)||(19087414-19087468)
chr7 (160-213)||(28175449-28175502)
chr7 (173-213)||(883890-883930)
chr7 (173-213)||(1243219-1243259)
chr7 (253-305)||(11991630-11991682)
chr7 (129-213)||(31740591-31740673)
[»] chr6 (9 HSPs)
chr6 (159-213)||(1288446-1288500)
chr6 (159-213)||(1729187-1729241)
chr6 (159-213)||(34544432-34544486)
chr6 (17-70)||(20821971-20822024)
chr6 (19-70)||(20821252-20821303)
chr6 (159-209)||(724716-724766)
chr6 (159-213)||(2748292-2748346)
chr6 (159-213)||(25142252-25142306)
chr6 (253-301)||(2046127-2046175)
[»] chr4 (24 HSPs)
chr4 (162-214)||(33890276-33890328)
chr4 (159-213)||(39033644-39033698)
chr4 (159-212)||(52327445-52327498)
chr4 (159-209)||(2103202-2103252)
chr4 (254-308)||(24418208-24418262)
chr4 (159-213)||(26026817-26026871)
chr4 (159-213)||(41758662-41758716)
chr4 (162-206)||(27381739-27381783)
chr4 (159-203)||(27611824-27611868)
chr4 (446-482)||(27952494-27952530)
chr4 (162-213)||(3535307-3535358)
chr4 (162-209)||(4120310-4120357)
chr4 (162-209)||(46881017-46881064)
chr4 (159-213)||(17896179-17896233)
chr4 (159-213)||(30802436-30802489)
chr4 (159-213)||(42617751-42617804)
chr4 (159-213)||(46765371-46765425)
chr4 (160-213)||(44555579-44555632)
chr4 (449-485)||(5484360-5484396)
chr4 (165-213)||(17425588-17425636)
chr4 (161-213)||(37392856-37392908)
chr4 (159-207)||(39276527-39276575)
chr4 (173-213)||(44820232-44820272)
chr4 (446-482)||(47397907-47397943)
[»] scaffold0010 (1 HSPs)
scaffold0010 (159-213)||(166747-166801)
[»] chr8 (15 HSPs)
chr8 (159-213)||(6078474-6078528)
chr8 (159-213)||(6082406-6082460)
chr8 (159-206)||(12524609-12524656)
chr8 (159-213)||(2111023-2111077)
chr8 (159-213)||(3346115-3346169)
chr8 (159-213)||(37740756-37740810)
chr8 (255-320)||(36049644-36049709)
chr8 (159-213)||(5621238-5621292)
chr8 (159-213)||(10861099-10861153)
chr8 (159-213)||(35764733-35764787)
chr8 (159-213)||(43408682-43408736)
chr8 (169-213)||(8407595-8407639)
chr8 (159-187)||(12367621-12367649)
chr8 (446-478)||(29341285-29341317)
chr8 (253-305)||(29861397-29861448)
[»] chr3 (11 HSPs)
chr3 (159-213)||(54481492-54481546)
chr3 (159-212)||(22838270-22838323)
chr3 (159-213)||(22827817-22827871)
chr3 (159-213)||(11042065-11042118)
chr3 (159-213)||(22796663-22796717)
chr3 (159-213)||(27696260-27696314)
chr3 (448-478)||(45746504-45746534)
chr3 (159-208)||(22815516-22815565)
chr3 (159-212)||(33674404-33674457)
chr3 (160-209)||(54399584-54399633)
chr3 (254-314)||(37243669-37243729)
[»] chr1 (15 HSPs)
chr1 (159-213)||(1714043-1714097)
chr1 (159-213)||(31795356-31795410)
chr1 (162-213)||(35058693-35058744)
chr1 (159-213)||(3160997-3161051)
chr1 (159-213)||(3949642-3949696)
chr1 (171-213)||(40856624-40856666)
chr1 (18-70)||(34660833-34660885)
chr1 (159-210)||(5923865-5923916)
chr1 (158-213)||(38321977-38322032)
chr1 (159-213)||(17812729-17812783)
chr1 (159-213)||(31117603-31117657)
chr1 (159-213)||(32348414-32348468)
chr1 (159-200)||(34619175-34619216)
chr1 (161-213)||(22593514-22593566)
chr1 (173-209)||(42695383-42695419)
[»] chr2 (9 HSPs)
chr2 (162-213)||(42139533-42139584)
chr2 (159-213)||(31063107-31063161)
chr2 (162-213)||(15967972-15968023)
chr2 (162-213)||(18491975-18492026)
chr2 (159-206)||(36514635-36514682)
chr2 (446-480)||(17524377-17524411)
chr2 (159-213)||(27863878-27863932)
chr2 (133-213)||(30804356-30804435)
chr2 (173-213)||(35817231-35817271)
[»] chr5 (7 HSPs)
chr5 (159-213)||(41892774-41892828)
chr5 (164-203)||(6035970-6036009)
chr5 (158-213)||(8173413-8173468)
chr5 (159-209)||(2942081-2942131)
chr5 (448-478)||(8235462-8235492)
chr5 (159-213)||(31806597-31806651)
chr5 (162-210)||(17902799-17902847)
[»] scaffold0181 (1 HSPs)
scaffold0181 (253-293)||(14106-14146)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 123 - 521
Target Start/End: Complemental strand, 31627726 - 31627333
Alignment:
Q  123 gctaacttatagctgataacagataaggtaactattttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaagaccnnnnn 222  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  31627726 gctaacttatagctgataacagataagttaactattttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaagaccaaaaa 31627627  T
Q  223 nnttatttcattaatatttaannnnnnnnc--caattaagattacaaaggtaaaataaagatgaaaaatgataaactataagctacttaagttatcttat 320  Q
      |||||||||||||||||||        |  ||||||||    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  31627626 aattatttcattaatatttaattttttttctccaattaag----caaaggtaaaataaagatgaaaaatgataaactataagccagttaagttatcttat 31627531  T
Q  321 nnnnnnncactacaagtcaataagaataaattataaactcgtaagaatatgacgattattacacaaatcaattttaccnnnnnnncactacttccttcag 420  Q
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       ||||||||||||| |    
T  31627530 aaaaaaacactacaagtcaataagaataaattataaactcataagaatatgacgattattacacaaatcaattttaccaaaaaaacactacttccttctg 31627431  T
Q  421 tcactattataagaagnnnnnnnnnttattttttagatttattgaataattaatatatgtgacctcggagtgagtaagttataagctgaaaaatgtttct 520  Q
    |||||||||||||||          |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31627430 tcactattataagaa---aaaaaaattattttttaaatttattgaataattgatatatgtgacctcggagtgagtaagttataagctgaaaaatgtttct 31627334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 19683453 - 19683507
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||||||||| || | |||||| ||||| ||||||||||||    
T  19683453 ttgaatttgtagtgtttgataaaaatagcggttgaagtaactaataaatatgaaa 19683507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 3837143 - 3837095
Alignment:
Q  162 aatttgtagtgtttgataaaattaaccgttgaactaacttataaatatg 210  Q
    ||||||||||||||| |||||||| |||||||| || ||||||||||||    
T  3837143 aatttgtagtgtttggtaaaattagccgttgaagtagcttataaatatg 3837095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 44235322 - 44235370
Alignment:
Q  162 aatttgtagtgtttgataaaattaaccgttgaactaacttataaatatg 210  Q
    ||||||||||||||| |||| |||||||||||| || ||||||||||||    
T  44235322 aatttgtagtgtttggtaaagttaaccgttgaagtagcttataaatatg 44235370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 2525351 - 2525297
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||| |||||| |||||||| | | ||||||| |||||||||||||||    
T  2525351 ttgaatttgtattgtttggtaaaattagcagctgaactagcttataaatatgaaa 2525297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 11991456 - 11991506
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatat 209  Q
    ||||||||||||||||||||||||||  |||||||| ||  ||||||||||    
T  11991456 ttgaatttgtagtgtttgataaaattcgccgttgaaatagtttataaatat 11991506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 19087468 - 19087414
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||| |||| ||||||||||||||| |||||| ||| ||| ||||||||||    
T  19087468 ttgaatttatagtatttgataaaattaacggttgaattaatttaaaaatatgaaa 19087414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 28175449 - 28175502
Alignment:
Q  160 tgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||||| ||||| | |||||| || |||| ||||||||||    
T  28175449 tgaatttgtagtgtttgatataattagcggttgaagtagcttacaaatatgaaa 28175502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 883930 - 883890
Alignment:
Q  173 tttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||| |||||| || |||||||||||||||    
T  883930 tttgataaaattaacggttgaagtagcttataaatatgaaa 883890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 1243259 - 1243219
Alignment:
Q  173 tttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||| |||||| || |||||||||||||||    
T  1243259 tttgataaaattaacggttgaagtagcttataaatatgaaa 1243219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 11991630 - 11991682
Alignment:
Q  253 caattaagattacaaaggtaaaataaagatgaaaaatgataaactataagcta 305  Q
    ||||||| ||||||||| ||||||  |||||||||||||||| ||||| ||||    
T  11991630 caattaaaattacaaagataaaattgagatgaaaaatgataagctatatgcta 11991682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 31740673 - 31740591
Alignment:
Q  129 ttatagctgataacagataaggtaactattttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||| ||||| |||||||| || || | ||||||||| |||||||| |||||||| |  ||||| ||||||||||||||||||    
T  31740673 ttatagatgatagcagataagttagct-tattgaatttgcagtgtttggtaaaatta-cgattgaattaacttataaatatgaaa 31740591  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 1288500 - 1288446
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||| |||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  1288500 ttgattttgtagtgtttgataaaattaacggttgaaataacttataaatatgaaa 1288446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 1729187 - 1729241
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||| ||||||||||| ||||  |||||| ||||||||||||||||||    
T  1729187 ttgaatttgtattgtttgataaagttaatagttgaagtaacttataaatatgaaa 1729241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 34544486 - 34544432
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||||||||| |||||   ||||||||| |||||||||||||||    
T  34544486 ttgaatttgtagtgtttgatacaattagtggttgaactagcttataaatatgaaa 34544432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 20821971 - 20822024
Alignment:
Q  17 acaatgatccatatgcgcctgattcaattccccctagatacaaaattgaaattt 70  Q
    ||||||| ||||||||||||||||| ||||||||| | | ||||||||||||||    
T  20821971 acaatgacccatatgcgcctgattcgattccccctgggtgcaaaattgaaattt 20822024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 20821303 - 20821252
Alignment:
Q  19 aatgatccatatgcgcctgattcaattccccctagatacaaaattgaaattt 70  Q
    ||||||||||||||||||| ||| ||||||||| | | ||||||||||||||    
T  20821303 aatgatccatatgcgcctggttcgattccccctgggtgcaaaattgaaattt 20821252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 724766 - 724716
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatat 209  Q
    |||||||||||||||||||||||||||   |||||| || |||||||||||    
T  724766 ttgaatttgtagtgtttgataaaattagtggttgaagtagcttataaatat 724716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 2748292 - 2748346
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||  ||||||| ||||||||||| |||||||||  ||||||||||||||    
T  2748292 ttgaatttacagtgtttaataaaattaacggttgaactagtttataaatatgaaa 2748346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 25142252 - 25142306
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||| | ||||||||||||||  |||||||||  ||||||||||||||    
T  25142252 ttgaatttgtaatatttgataaaattaatggttgaactattttataaatatgaaa 25142306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 2046127 - 2046175
Alignment:
Q  253 caattaagattacaaaggtaaaataaagatgaaaaatgataaactataa 301  Q
    ||||||||||| ||| ||||||||  ||||||| |||||||||||||||    
T  2046127 caattaagatttcaagggtaaaattgagatgaataatgataaactataa 2046175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 33890328 - 33890276
Alignment:
Q  162 aatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaag 214  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  33890328 aatttgtaatgtttgataaaattaactgttgaactatcttataaatatgaaag 33890276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 39033698 - 39033644
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||    
T  39033698 ttgaatttgtagtgtttgataaaattatcggttaaactaacttaaaaatatgaaa 39033644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 52327498 - 52327445
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaa 212  Q
    |||||||||||||||||| |||||||| | ||||||||| ||||||||||||||    
T  52327498 ttgaatttgtagtgtttggtaaaattagcagttgaactagcttataaatatgaa 52327445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 2103202 - 2103252
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatat 209  Q
    |||||||||||||||||| |||||||||  ||||||| |||||||||||||    
T  2103202 ttgaatttgtagtgtttggtaaaattaatggttgaacaaacttataaatat 2103252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 24418208 - 24418262
Alignment:
Q  254 aattaagattacaaaggtaaaataaagatgaaaaatgataaactataagctactt 308  Q
    |||||||||| ||  |||||||||||||| ||||||||||| |||||||||||||    
T  24418208 aattaagattgcaggggtaaaataaagataaaaaatgataagctataagctactt 24418262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 26026871 - 26026817
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||||||||||| ||| |  ||||||||| ||||||||||||||    
T  26026871 ttgaatttgtagtgtttgataaatttagcaattgaactaatttataaatatgaaa 26026817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 41758716 - 41758662
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||| | |||||||| | ||||||||||| |||||||||||||    
T  41758716 ttgaatttgtagtgttcggtaaaattagcagttgaactaacgtataaatatgaaa 41758662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 27381739 - 27381783
Alignment:
Q  162 aatttgtagtgtttgataaaattaaccgttgaactaacttataaa 206  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||    
T  27381739 aatttataatgtttgataaaattaacggttgaactaacttataaa 27381783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 27611824 - 27611868
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttat 203  Q
    |||||||||||||||||| |||||||| | |||||||||||||||    
T  27611824 ttgaatttgtagtgtttggtaaaattagcagttgaactaacttat 27611868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 482
Target Start/End: Original strand, 27952494 - 27952530
Alignment:
Q  446 ttattttttagatttattgaataattaatatatgtga 482  Q
    |||||||||||||||||||||||||| ||||||||||    
T  27952494 ttattttttagatttattgaataatttatatatgtga 27952530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 3535358 - 3535307
Alignment:
Q  162 aatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||| |||| ||| | |||||| ||||||||||||||||||    
T  3535358 aatttgtagtgtttggtaaatttaccagttgaattaacttataaatatgaaa 3535307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 4120357 - 4120310
Alignment:
Q  162 aatttgtagtgtttgataaaattaaccgttgaactaacttataaatat 209  Q
    |||||||||||||||||||||||| | |||||||||  ||||||||||    
T  4120357 aatttgtagtgtttgataaaattatcagttgaactagtttataaatat 4120310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 46881064 - 46881017
Alignment:
Q  162 aatttgtagtgtttgataaaattaaccgttgaactaacttataaatat 209  Q
    ||||| |||||||| ||||||||||| | |||||||||||||||||||    
T  46881064 aatttatagtgtttaataaaattaacggctgaactaacttataaatat 46881017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 17896233 - 17896179
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||| ||||||||||| |||||||| | ||||| ||||||||||| |||||    
T  17896233 ttgaatttttagtgtttgatgaaattaacggctgaacaaacttataaatttgaaa 17896179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 30802489 - 30802436
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||| ||||||| ||  ||||| ||||||||||||||||||    
T  30802489 ttgaatttgtagtgtttggtaaaatt-acgattgaattaacttataaatatgaaa 30802436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 42617804 - 42617751
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||  |||| ||||| |||||||||| ||||||||||||||    
T  42617804 ttgaatttgtagtgtttagtaaa-ttaacggttgaactaatttataaatatgaaa 42617751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 46765371 - 46765425
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||| |||||||| |  |||| || ||||||||||||||||    
T  46765371 ttgaatttgtagtgtttgctaaaattagcacttgagcttacttataaatatgaaa 46765425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 44555579 - 44555632
Alignment:
Q  160 tgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||| ||||||||||| |||||||| | ||| ||||| |||||||||||||||    
T  44555579 tgaatctgtagtgtttggtaaaattagcggttaaactaccttataaatatgaaa 44555632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 485
Target Start/End: Original strand, 5484360 - 5484396
Alignment:
Q  449 ttttttagatttattgaataattaatatatgtgacct 485  Q
    |||||||| |||||||||||||||||||||| |||||    
T  5484360 ttttttaggtttattgaataattaatatatgagacct 5484396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 17425588 - 17425636
Alignment:
Q  165 ttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||| ||||||||   |||||| ||||||||||||||||||    
T  17425588 ttgtagtgtttggtaaaattagtggttgaagtaacttataaatatgaaa 17425636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 37392856 - 37392908
Alignment:
Q  161 gaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||| |||| |||||||||||||||    ||||||||||||||||||||||    
T  37392856 gaatttatagtatttgataaaattaacaaccgaactaacttataaatatgaaa 37392908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 39276575 - 39276527
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaat 207  Q
    |||||||||||||||||| ||||||||   ||||||||| |||||||||    
T  39276575 ttgaatttgtagtgtttggtaaaattagtggttgaactagcttataaat 39276527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 44820272 - 44820232
Alignment:
Q  173 tttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||| | |||||| ||||||||||||||||||    
T  44820272 tttgataaaattagcagttgaaataacttataaatatgaaa 44820232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 482
Target Start/End: Original strand, 47397907 - 47397943
Alignment:
Q  446 ttattttttagatttattgaataattaatatatgtga 482  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  47397907 ttattttttagatttattcaataaataatatatgtga 47397943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 166801 - 166747
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||| |||||||| | ||||||||| |||||||||||||||    
T  166801 ttgaatttgtagtgtttggtaaaattagcggttgaactagcttataaatatgaaa 166747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 6078474 - 6078528
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||| ||||||||||||||| || ||| ||||||||||||||||||    
T  6078474 ttgaatttgtagtttttgataaaattaacggtggaagtaacttataaatatgaaa 6078528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 6082406 - 6082460
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||| ||||||||||||||| || ||| ||||||||||||||||||    
T  6082406 ttgaatttgtagtttttgataaaattaacggtggaagtaacttataaatatgaaa 6082460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 12524609 - 12524656
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaa 206  Q
    |||||||||||||||||| |||||||| |||||||| |||||||||||    
T  12524609 ttgaatttgtagtgtttggtaaaattagccgttgaagtaacttataaa 12524656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 2111077 - 2111023
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||| |||||||| |||||||| | ||||||||| |||||||||||||||    
T  2111077 ttgaatttgcagtgtttggtaaaattagcggttgaactagcttataaatatgaaa 2111023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 3346115 - 3346169
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||| ||| ||||||||||||| |||| | ||||||||||||||||||    
T  3346115 ttgaatttgtaatgtatgataaaattaacggttggaataacttataaatatgaaa 3346169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 37740810 - 37740756
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||||||||| ||||| | ||||||||| ||| |||||||||||    
T  37740810 ttgaatttgtagtgtttgatacaattagctgttgaactagcttttaaatatgaaa 37740756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 36049644 - 36049709
Alignment:
Q  255 attaagattacaaaggtaaaataaagatgaaaaatgataaactataagctacttaagttatcttat 320  Q
    ||||||||||||| ||||||||  |||| || |||||||||||||||| ||||||| ||| |||||    
T  36049644 attaagattacaatggtaaaattgagataaataatgataaactataagttacttaaattagcttat 36049709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 5621238 - 5621292
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||| ||  ||||||||| | |||| ||||||||||||||||||||    
T  5621238 ttgaatttgtagtcttgtataaaattagcggttggactaacttataaatatgaaa 5621292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 10861153 - 10861099
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||| ||||||||||||| |||   ||||||| |||||||||||||||    
T  10861153 ttgaatttgtaatgtttgataaaatcaacaactgaactagcttataaatatgaaa 10861099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 35764787 - 35764733
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||| |||||||| |||||||| | |||||||||  ||||||||||||||    
T  35764787 ttgaatttgcagtgtttggtaaaattagcggttgaactagtttataaatatgaaa 35764733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 43408736 - 43408682
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||| ||||||||    |||||||| |||||||||||||||    
T  43408736 ttgaatttgtagtgtttggtaaaattagtaattgaactagcttataaatatgaaa 43408682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 8407639 - 8407595
Alignment:
Q  169 agtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||| |||||||| | ||||||||| |||||||||||||||    
T  8407639 agtgtttggtaaaattagcggttgaactagcttataaatatgaaa 8407595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 187
Target Start/End: Complemental strand, 12367649 - 12367621
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaac 187  Q
    |||||||||||||||||||||||||||||    
T  12367649 ttgaatttgtagtgtttgataaaattaac 12367621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 478
Target Start/End: Original strand, 29341285 - 29341317
Alignment:
Q  446 ttattttttagatttattgaataattaatatat 478  Q
    |||||||| ||||||||||||||||||||||||    
T  29341285 ttatttttaagatttattgaataattaatatat 29341317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 29861448 - 29861397
Alignment:
Q  253 caattaagattacaaaggtaaaataaagatgaaaaatgataaactataagcta 305  Q
    ||||||||||||||| ||||||||  ||| |||||||||||| ||||||||||    
T  29861448 caattaagattacaagggtaaaattgaga-gaaaaatgataagctataagcta 29861397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 54481492 - 54481546
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||| |||||||||||||||||| | ||||| |||||||||||||||||||    
T  54481492 ttgaatttatagtgtttgataaaattatctgttgagctaacttataaatatgaaa 54481546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 22838323 - 22838270
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaa 212  Q
    ||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||    
T  22838323 ttgaatttgtagtctttgataaaattagcggttgaacaaacttataaatatgaa 22838270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 22827871 - 22827817
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||| ||  ||||||||| | |||||||||||||||||||||||||    
T  22827871 ttgaatttgtagtcttgtataaaattagcggttgaactaacttataaatatgaaa 22827817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 11042118 - 11042065
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||| ||||||| ||||||||   |||||||||||||||||||||||||    
T  11042118 ttgaatttgt-gtgtttggtaaaattagtggttgaactaacttataaatatgaaa 11042065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 22796717 - 22796663
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||| ||  ||||||||| | |||| ||||||||||||||||||||    
T  22796717 ttgaatttgtagtcttgtataaaattagcggttggactaacttataaatatgaaa 22796663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 27696260 - 27696314
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||| ||||||||||||||  |||||| |||||| || ||||||||    
T  27696260 ttgaatttgtagtatttgataaaattaatggttgaattaacttttatatatgaaa 27696314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 478
Target Start/End: Original strand, 45746504 - 45746534
Alignment:
Q  448 attttttagatttattgaataattaatatat 478  Q
    |||||||||||||||||||||||||||||||    
T  45746504 attttttagatttattgaataattaatatat 45746534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 22815565 - 22815516
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaata 208  Q
    ||||||||||| | ||||||||||||| | |||||||||| |||||||||    
T  22815565 ttgaatttgtaatctttgataaaattagcggttgaactaaattataaata 22815516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 33674404 - 33674457
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaa 212  Q
    |||||||||||||||||| |||||| | | ||||||||| || |||||||||||    
T  33674404 ttgaatttgtagtgtttgctaaaatcagcagttgaactagctcataaatatgaa 33674457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 54399633 - 54399584
Alignment:
Q  160 tgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatat 209  Q
    |||||||||||||||||||| ||| ||| |||||| || |||||||||||    
T  54399633 tgaatttgtagtgtttgatagaatcaacagttgaattagcttataaatat 54399584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 37243729 - 37243669
Alignment:
Q  254 aattaagattacaaaggtaaaataaagatgaaaaatgataaactataagctacttaagtta 314  Q
    |||||||||| ||  |||||||| ||||| |||||| ||||||||||||||| || |||||    
T  37243729 aattaagattgcaggggtaaaatgaagataaaaaattataaactataagctatttgagtta 37243669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 1714043 - 1714097
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||    
T  1714043 ttgaatttgtagtgtttggtaaaattaaccgttgaagtagtttataaatatgaaa 1714097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 31795356 - 31795410
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||    
T  31795356 ttgaatttgtagtgtttggtaaaactaacggttgaactagcttataaatatgaaa 31795410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 35058744 - 35058693
Alignment:
Q  162 aatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||| |||||||| | ||||||||| |||||||||||||||    
T  35058744 aatttgtagtgtttggtaaaattagcggttgaactaccttataaatatgaaa 35058693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 3161051 - 3160997
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||| ||||||||||  |||||||| | |||||||||||||    
T  3161051 ttgaatttgtagtgtttggtaaaattaacgtttgaactagcatataaatatgaaa 3160997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 3949642 - 3949696
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||| |||||||| |  ||||||||| ||||||||||||||    
T  3949642 ttgaatttgtagtgtttggtaaaattagcgtttgaactaatttataaatatgaaa 3949696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 40856624 - 40856666
Alignment:
Q  171 tgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||| | |||||||||||||||||||||||||    
T  40856624 tgtttgataaaattagcggttgaactaacttataaatatgaaa 40856666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 34660885 - 34660833
Alignment:
Q  18 caatgatccatatgcgcctgattcaattccccctagatacaaaattgaaattt 70  Q
    |||||||||||||||||||| ||  ||||||||||| | ||||||||||||||    
T  34660885 caatgatccatatgcgcctggtttgattccccctaggtgcaaaattgaaattt 34660833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 5923916 - 5923865
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatg 210  Q
    |||||||| ||||||||| |||||||||  ||||||||| ||||||||||||    
T  5923916 ttgaatttttagtgtttggtaaaattaatggttgaactagcttataaatatg 5923865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 38321977 - 38322032
Alignment:
Q  158 tttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||||||| |||||||||| |  || |||||| ||||||||||||    
T  38321977 tttgaatttgtagtgtttggtaaaattaacggccgacctaactgataaatatgaaa 38322032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 17812729 - 17812783
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||| || ||||| ||||||||||  |||||| ||||||||||||||||||    
T  17812729 ttgaatttataatgtttaataaaattaatagttgaagtaacttataaatatgaaa 17812783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 31117603 - 31117657
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||||||||||||||| |  ||||| || | |||||||||||||    
T  31117603 ttgaatttgtagtgtttgataaaattagcgattgaaatagcatataaatatgaaa 31117657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 32348468 - 32348414
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||| |||||||| | ||||| ||| ||||||||| |||||    
T  32348468 ttgaatttgtagtgtttggtaaaattagcggttgagctagcttataaatttgaaa 32348414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 34619175 - 34619216
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaact 200  Q
    |||||||||||| ||||| |||||||||| ||||||||||||    
T  34619175 ttgaatttgtagggtttggtaaaattaacagttgaactaact 34619216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 22593514 - 22593566
Alignment:
Q  161 gaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||| |||||||||||||||||| | |||  |||| |||||||||||||||    
T  22593514 gaatttatagtgtttgataaaattagcagttcgactagcttataaatatgaaa 22593566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 42695383 - 42695419
Alignment:
Q  173 tttgataaaattaaccgttgaactaacttataaatat 209  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  42695383 tttgataaaattaacagttgaaataacttataaatat 42695419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 42139584 - 42139533
Alignment:
Q  162 aatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||| |||||||| | ||||||||| |||||||||||||||    
T  42139584 aatttgtagtgtttggtaaaattagcagttgaactagcttataaatatgaaa 42139533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 31063161 - 31063107
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||||||| |||| | |||||| ||| ||||||||||||||    
T  31063161 ttgaatttgtagtgtttgataagattagcggttgaagtaatttataaatatgaaa 31063107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 15968023 - 15967972
Alignment:
Q  162 aatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||| ||| |||||||| | ||||||||| |||||||||||||||    
T  15968023 aatttgtagtgcttggtaaaattagcggttgaactagcttataaatatgaaa 15967972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 18492026 - 18491975
Alignment:
Q  162 aatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||| || ||||||||||||||| | ||||||||||||||| |||||||||    
T  18492026 aatttataatgtttgataaaattagcagttgaactaacttattaatatgaaa 18491975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 36514682 - 36514635
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaa 206  Q
    ||||||||||||||||| ||||||||||  |||||||||||| |||||    
T  36514682 ttgaatttgtagtgtttcataaaattaatggttgaactaactgataaa 36514635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 480
Target Start/End: Complemental strand, 17524411 - 17524377
Alignment:
Q  446 ttattttttagatttattgaataattaatatatgt 480  Q
    |||||||||||||||||||||||||| ||||||||    
T  17524411 ttattttttagatttattgaataatttatatatgt 17524377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 27863932 - 27863878
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||||||||||||||| | |||||  || ||||||||| |||||    
T  27863932 ttgaatttgtagtgtttgataaaattaccggttgaggtagcttataaatgtgaaa 27863878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 30804356 - 30804435
Alignment:
Q  133 agctgataacagataaggtaactattttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||| ||| |||||||| |||||| || |||||||||||||||  |||||||| | |||||||||  |||||| |||||||    
T  30804356 agcttatagcagataagctaactaatt-gaatttgtagtgtttcgtaaaattagcggttgaactagattataagtatgaaa 30804435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 35817271 - 35817231
Alignment:
Q  173 tttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||||||  |||||||||| ||||||||||||||    
T  35817271 tttgataaaattaatggttgaactaatttataaatatgaaa 35817231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 41892774 - 41892828
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||||||| || ||||||| ||| ||||| |||||||||||||||    
T  41892774 ttgaatttgtagtgtttggtataattaacggttaaactagcttataaatatgaaa 41892828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 6036009 - 6035970
Alignment:
Q  164 tttgtagtgtttgataaaattaaccgttgaactaacttat 203  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  6036009 tttgtagtgtttgctaaaattagccgttgaactaacttat 6035970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 8173468 - 8173413
Alignment:
Q  158 tttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    |||||||||||||  ||||||||||||| | | ||||||||| |||||||||||||    
T  8173468 tttgaatttgtagcttttgataaaattagcggatgaactaacctataaatatgaaa 8173413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 2942131 - 2942081
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatat 209  Q
    |||||||||||| ||||| ||||||||   |||||||||||||||||||||    
T  2942131 ttgaatttgtagggtttggtaaaattagtggttgaactaacttataaatat 2942081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 478
Target Start/End: Complemental strand, 8235492 - 8235462
Alignment:
Q  448 attttttagatttattgaataattaatatat 478  Q
    |||||||||||||||||||||||||||||||    
T  8235492 attttttagatttattgaataattaatatat 8235462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 31806597 - 31806651
Alignment:
Q  159 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatatgaaa 213  Q
    ||||||||||| |||||| |||||||||   |||||||| |||||||||||||||    
T  31806597 ttgaatttgtattgtttggtaaaattaaggattgaactatcttataaatatgaaa 31806651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 17902847 - 17902799
Alignment:
Q  162 aatttgtagtgtttgataaaattaaccgttgaactaacttataaatatg 210  Q
    ||||||||||||||| ||||| || | ||||||||| ||||||||||||    
T  17902847 aatttgtagtgtttggtaaaactagcagttgaactagcttataaatatg 17902799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 14106 - 14146
Alignment:
Q  253 caattaagattacaaaggtaaaataaagatgaaaaatgata 293  Q
    |||||||| ||||||||||||||||| || |||||||||||    
T  14106 caattaagtttacaaaggtaaaataaggaggaaaaatgata 14146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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