View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4411_low_9 (Length: 520)
Name: NF4411_low_9
Description: NF4411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4411_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 12 - 520
Target Start/End: Complemental strand, 30256917 - 30256425
Alignment:
| Q |
12 |
cacagagattatccataaggcaaatgcgtcgtgcaccggagttgtgatgcgaaagtggaagaagaaaactaggacaacaagacgcatgacaatgactatg |
111 |
Q |
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| T |
30256917 |
cacagagattatccataaggcaaatgcgtcgtgcaccggagttgtgatgcgaaagtggaagaagaaaactaggacaacaagacgcatgacaatgactatg |
30256818 |
T |
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| Q |
112 |
cgatatggattgattaggctcgaagctattggtactttgcgccataatggttgccttgactcagccagcctgcaagatcataataacagaagaaagaaac |
211 |
Q |
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| T |
30256817 |
cgatatggattgattaggctcgaagctattggtactttgcgccataatggctgccttgactcagccagcctgcaagatcataataacagaagaaagaaac |
30256718 |
T |
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| Q |
212 |
atcttaagtaagagttgagaagaagaaaatgcattctaaatttctaatgtaaatagtttcatagcgttgaatcgttgatagagtatttgagagaagaaaa |
311 |
Q |
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| T |
30256717 |
atcttaagtaagagttgagaagaagaaaatgcatt--------ctaatgtacatagtttcatag--------cgttgatagagtatttgagagaagaaaa |
30256634 |
T |
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| Q |
312 |
gttacaggtagtcatcttcttctatgtcattgctcataagacttctcttttcttgctttcctttccctttctcttcatcatagttgaatgctttctgctc |
411 |
Q |
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| T |
30256633 |
gttacaggtagtcatcttcttctatgtcattgctcataagacttctcttttcttgctttcctttccctttctcttcatcatagttgaatgctttctgctc |
30256534 |
T |
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| Q |
412 |
ttcaaaatccttactagctactacagaacaactcagaaaagtgtgcataaaattattacagnnnnnnnnncattcattccaaagttaatttaacacaaaa |
511 |
Q |
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| T |
30256533 |
ttcaaaatccttactagctactacagaacaactcagaaaagtgtgcataaaattattacagtttttttttcattcattccaaagttaatttaacacaaaa |
30256434 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 15170588 - 15170478
Alignment:
| Q |
68 |
ggaagaagaaaactaggacaacaagacgcatgacaatgactatgcgatatggattgattaggctcgaagctattggtactttgcgccataatggttgcct |
167 |
Q |
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|||||||||| |||||| ||||| | ||||| ||| ||||| || |||||||| || | ||| || | |||||| |||||||||||||||||||| || |
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| T |
15170588 |
ggaagaagaatgctaggattacaagtctcatgataattactattcggtatggatttatcaagcttgatggtattggaactttgcgccataatggttgtct |
15170489 |
T |
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| Q |
168 |
tgactcagcca |
178 |
Q |
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| T |
15170488 |
tgcttcagcca |
15170478 |
T |
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