View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4412-Insertion-1 (Length: 1030)

Name: NF4412-Insertion-1
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4412-Insertion-1
NF4412-Insertion-1
[»] chr5 (31 HSPs)
chr5 (8-580)||(929887-930465)
chr5 (598-910)||(930556-930888)
chr5 (604-727)||(27498808-27498931)
chr5 (620-727)||(19145505-19145611)
chr5 (604-729)||(8484738-8484863)
chr5 (633-727)||(15931056-15931149)
chr5 (633-727)||(32059547-32059640)
chr5 (656-725)||(2499307-2499376)
chr5 (678-727)||(12317301-12317350)
chr5 (678-729)||(4603772-4603823)
chr5 (633-727)||(11465014-11465107)
chr5 (678-729)||(38631112-38631163)
chr5 (633-727)||(25586929-25587022)
chr5 (633-727)||(31288053-31288146)
chr5 (633-727)||(34310139-34310232)
chr5 (673-727)||(40330630-40330684)
chr5 (678-727)||(1827681-1827730)
chr5 (678-727)||(13108600-13108649)
chr5 (678-727)||(22392698-22392747)
chr5 (678-726)||(15971273-15971321)
chr5 (680-727)||(23270675-23270722)
chr5 (678-729)||(25750762-25750813)
chr5 (633-727)||(11926609-11926702)
chr5 (633-727)||(15641212-15641305)
chr5 (673-727)||(25343236-25343290)
chr5 (680-726)||(42006791-42006837)
chr5 (678-727)||(7085777-7085826)
chr5 (678-727)||(13038605-13038654)
chr5 (673-726)||(21042671-21042724)
chr5 (678-727)||(28614635-28614683)
chr5 (678-727)||(36954815-36954864)
[»] chr2 (13 HSPs)
chr2 (219-581)||(19255817-19256168)
chr2 (633-727)||(8192458-8192551)
chr2 (633-729)||(4567544-4567639)
chr2 (614-722)||(4618773-4618880)
chr2 (580-727)||(15037956-15038103)
chr2 (604-727)||(44946130-44946253)
chr2 (633-727)||(32845088-32845181)
chr2 (678-727)||(18976576-18976625)
chr2 (678-727)||(27269501-27269550)
chr2 (637-727)||(33827684-33827773)
chr2 (678-727)||(6714432-6714481)
chr2 (678-727)||(11941361-11941410)
chr2 (654-727)||(32526212-32526285)
[»] chr1 (23 HSPs)
chr1 (604-727)||(32729542-32729664)
chr1 (633-727)||(168198-168291)
chr1 (633-727)||(4621344-4621437)
chr1 (633-727)||(15059509-15059602)
chr1 (633-727)||(24674390-24674483)
chr1 (633-727)||(46607807-46607900)
chr1 (579-727)||(1138576-1138724)
chr1 (633-726)||(24122021-24122113)
chr1 (657-726)||(37349521-37349590)
chr1 (580-727)||(8077644-8077791)
chr1 (679-727)||(47091687-47091735)
chr1 (620-727)||(24216975-24217081)
chr1 (633-727)||(7197353-7197446)
chr1 (678-727)||(18533875-18533924)
chr1 (678-727)||(34778339-34778388)
chr1 (678-726)||(2272342-2272390)
chr1 (632-727)||(20487296-20487390)
chr1 (680-727)||(40802220-40802267)
chr1 (633-727)||(23734113-23734206)
chr1 (633-727)||(23741305-23741398)
chr1 (637-727)||(29057448-29057537)
chr1 (679-729)||(52592555-52592605)
chr1 (678-727)||(27455017-27455066)
[»] chr8 (20 HSPs)
chr8 (620-729)||(34694670-34694778)
chr8 (633-727)||(3734730-3734823)
chr8 (633-727)||(4718646-4718739)
chr8 (633-729)||(27746442-27746537)
chr8 (633-727)||(34237762-34237855)
chr8 (678-727)||(20305909-20305958)
chr8 (678-727)||(21092542-21092591)
chr8 (620-728)||(8387538-8387645)
chr8 (633-725)||(28193477-28193568)
chr8 (620-727)||(26168942-26169048)
chr8 (633-727)||(28964034-28964127)
chr8 (633-727)||(39349257-39349350)
chr8 (678-727)||(2618187-2618236)
chr8 (678-727)||(18532108-18532157)
chr8 (678-727)||(19471610-19471659)
chr8 (678-727)||(19542534-19542583)
chr8 (678-727)||(19590113-19590162)
chr8 (618-722)||(41070767-41070870)
chr8 (680-725)||(28465781-28465826)
chr8 (678-727)||(42643269-42643318)
[»] scaffold0576 (1 HSPs)
scaffold0576 (633-727)||(5189-5282)
[»] chr7 (33 HSPs)
chr7 (633-727)||(2751272-2751365)
chr7 (580-727)||(7275278-7275425)
chr7 (633-727)||(22638293-22638386)
chr7 (678-729)||(28089815-28089866)
chr7 (633-727)||(7175969-7176062)
chr7 (633-727)||(40543017-40543110)
chr7 (678-727)||(17212054-17212103)
chr7 (633-726)||(22119890-22119982)
chr7 (633-725)||(42814867-42814958)
chr7 (620-727)||(8435789-8435895)
chr7 (620-727)||(12211629-12211735)
chr7 (620-727)||(21574196-21574303)
chr7 (620-727)||(23330833-23330939)
chr7 (633-727)||(2103056-2103149)
chr7 (633-727)||(18044108-18044201)
chr7 (633-727)||(21217940-21218033)
chr7 (681-727)||(25333420-25333466)
chr7 (657-727)||(40332100-40332170)
chr7 (673-726)||(577681-577734)
chr7 (657-726)||(1469114-1469183)
chr7 (678-727)||(2344300-2344349)
chr7 (614-726)||(3950876-3950988)
chr7 (678-727)||(19421232-19421281)
chr7 (678-727)||(23854397-23854446)
chr7 (635-727)||(11997850-11997941)
chr7 (678-726)||(13332574-13332622)
chr7 (633-725)||(28646972-28647063)
chr7 (611-723)||(47380903-47381014)
chr7 (678-725)||(27312155-27312202)
chr7 (633-727)||(7799939-7800032)
chr7 (633-727)||(10091189-10091282)
chr7 (633-726)||(22696322-22696414)
chr7 (678-727)||(31713046-31713095)
[»] chr6 (16 HSPs)
chr6 (633-727)||(15360205-15360298)
chr6 (620-727)||(9208249-9208355)
chr6 (633-727)||(34147343-34147436)
chr6 (633-727)||(34159959-34160052)
chr6 (633-727)||(9238972-9239065)
chr6 (633-727)||(33499471-33499565)
chr6 (633-727)||(12591634-12591727)
chr6 (678-727)||(22576064-22576113)
chr6 (678-727)||(28672064-28672113)
chr6 (633-727)||(3222742-3222834)
chr6 (678-729)||(9843933-9843984)
chr6 (618-725)||(10377714-10377820)
chr6 (633-724)||(11448871-11448961)
chr6 (655-725)||(8260486-8260556)
chr6 (678-727)||(13753237-13753286)
chr6 (678-727)||(21982471-21982520)
[»] chr4 (19 HSPs)
chr4 (633-727)||(25852211-25852304)
chr4 (635-727)||(13873404-13873495)
chr4 (620-727)||(41621690-41621796)
chr4 (633-727)||(27528902-27528995)
chr4 (633-727)||(40058959-40059052)
chr4 (633-727)||(46714389-46714483)
chr4 (633-727)||(52983616-52983709)
chr4 (633-727)||(54127449-54127542)
chr4 (580-729)||(20566344-20566494)
chr4 (633-726)||(34835527-34835619)
chr4 (654-726)||(42245744-42245816)
chr4 (678-725)||(34722169-34722216)
chr4 (633-727)||(32986194-32986287)
chr4 (633-727)||(34844865-34844958)
chr4 (680-727)||(5609355-5609402)
chr4 (633-727)||(33696386-33696479)
chr4 (678-727)||(1985833-1985882)
chr4 (669-726)||(3089454-3089511)
chr4 (678-727)||(19660683-19660732)
[»] chr3 (30 HSPs)
chr3 (677-727)||(55287800-55287850)
chr3 (631-727)||(30257621-30257716)
chr3 (633-727)||(8456257-8456350)
chr3 (633-727)||(30807260-30807353)
chr3 (633-727)||(35492908-35493001)
chr3 (633-727)||(53424283-53424376)
chr3 (638-727)||(4252508-4252596)
chr3 (654-726)||(4462631-4462703)
chr3 (631-727)||(40940822-40940917)
chr3 (633-727)||(7485632-7485725)
chr3 (633-727)||(40133556-40133649)
chr3 (633-727)||(46576345-46576438)
chr3 (633-727)||(48977385-48977478)
chr3 (629-711)||(51390942-51391023)
chr3 (631-727)||(18176992-18177087)
chr3 (678-727)||(34492726-34492775)
chr3 (678-727)||(45529905-45529954)
chr3 (604-727)||(7470292-7470415)
chr3 (633-720)||(15566606-15566692)
chr3 (678-729)||(25344208-25344259)
chr3 (678-725)||(25379760-25379807)
chr3 (633-727)||(45272523-45272616)
chr3 (622-725)||(55371381-55371483)
chr3 (633-727)||(25289821-25289914)
chr3 (673-726)||(6041818-6041871)
chr3 (678-727)||(21362940-21362989)
chr3 (633-726)||(26158816-26158908)
chr3 (678-727)||(31537989-31538038)
chr3 (678-727)||(50582989-50583038)
chr3 (678-727)||(52455800-52455849)
[»] scaffold0070 (1 HSPs)
scaffold0070 (633-727)||(40322-40415)
[»] scaffold0026 (1 HSPs)
scaffold0026 (633-727)||(97473-97566)
[»] scaffold0623 (1 HSPs)
scaffold0623 (633-726)||(1163-1255)
[»] scaffold0366 (2 HSPs)
scaffold0366 (633-726)||(9406-9498)
scaffold0366 (678-726)||(12151-12199)
[»] scaffold0199 (1 HSPs)
scaffold0199 (678-727)||(8558-8607)
[»] scaffold0191 (1 HSPs)
scaffold0191 (8-77)||(24880-24949)
[»] scaffold0459 (1 HSPs)
scaffold0459 (678-726)||(10844-10892)
[»] scaffold0460 (1 HSPs)
scaffold0460 (632-727)||(8285-8379)
[»] scaffold0328 (1 HSPs)
scaffold0328 (678-727)||(14988-15037)
[»] scaffold0068 (1 HSPs)
scaffold0068 (678-727)||(41795-41844)
[»] scaffold0051 (1 HSPs)
scaffold0051 (678-727)||(53022-53071)
[»] scaffold0028 (1 HSPs)
scaffold0028 (654-727)||(27773-27846)


Alignment Details
Target: chr5 (Bit Score: 528; Significance: 0; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Original strand, 929887 - 930465
Alignment:
Q  8 ctttgataccacaatgttgcaaaaattgagagcacgggttctggtcttgaacgagtctcatgccaagccatccatgaaataagggtatcttgcgaagctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  929887 ctttgataccacaatgttgcaaaaattgagagcacgggttctggtcttgaacgagtctcatgccaagccatccatgaaataagggtatcttgcgaagctt 929986  T
Q  108 tgaaatgacattaagttttgttgtcaattatgataaaattaacgtgaatgcactgaacatatgcgaattcgtggtaaaagcatcaacaacttttctttga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  929987 tgaaatgacattaagttttgttgtcaattatgataaaattaacgtgaatgcactgaacatatgcgaatttgtggtaaaagcatcaacaacttttcttgga 930086  T
Q  208 tgccctataaggtacaattccctttaagttcttgggaatacctgttggcgcaaacccaagaagattattaacttaggaacctgtaattagttcattcaag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  930087 tgccctataaggtacaattccctttaagttcttgggaatacctgttggcgcaaacccaagaagattattgacttaggaacccgtaattagttcattcaag 930186  T
Q  308 tctagattgtcgtcttttaaaggaagattattgtcaattggaggtcgagcgacattgatcagttccgacgtctcatcttcactgcctctttatttcttct 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  930187 tctagattgtcgtcttttaaaggaagattattgtcaattggaggtcgagcgacattgatcagttccgacgtctcatcttcactgcctctttatttcttct 930286  T
Q  408 ccttctttaaagatcctaagaaagtcatatatttgctaacaaagatgcagagaagattcctatggcaaggagatgaggaaattatgaaaacatcatcggt 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  930287 ccttctttaaagatcctaagaaagtcatatatttgctaacaaagatgcagagaagattcctatggcaaggagatgaggaaattatgaaaacatcatgggt 930386  T
Q  508 ttgttggaat------tgttaggacaaaaaagagggtgatttaggaataaaaaactttgaattgttcaatctcgcattg 580  Q
    ||||||||||      |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  930387 ttgttggaataaaatctgttaggacaaaaaagagggagatttaggaataaaaaactttgaattgttcaatctcggattg 930465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 598 - 910
Target Start/End: Original strand, 930556 - 930888
Alignment:
Q  598 tgttctaagccatagcaagttatgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagattt 697  Q
    |||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| || |    
T  930556 tgttctaagccggagcaagctatgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaacctgagactttgagaggagcaaactctaaaatct 930655  T
Q  698 caagccaaccactaagccaaccccaaatggatctcgtattgatattaaaatggtgttggatgatgcttaatgcaaacaaattctcaatttcaggtacgac 797  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  930656 caagccaaccactgggccaaccccaaatggatctcgtattgatattaaaatggtgttggatgatgcttaatgcaaacaaattctcaatttcatgtacgac 930755  T
Q  798 aagattaaggattgggtaactgctgaacaaataagttttgatac----------ggtttctgaccctgaaacttttactctaacatatgtact------- 880  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||           
T  930756 aagattaagaattgggtaattgctgaacaaataagttttgatacgaagaattaaggtttctgaccctgaaacttttactctaacatatgtactctctgga 930855  T
Q  881 ---ggtggtgaccataagatcatcaaggcaaat 910  Q
       ||||||||||||||||||||||||| ||||    
T  930856 gggggtggtgaccataagatcatcaaggtaaat 930888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 604 - 727
Target Start/End: Original strand, 27498808 - 27498931
Alignment:
Q  604 aagccatagcaagttatgtatgaattt-gtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagc 702  Q
    |||||| |||||| |||||||| | || | |||||||||||||||||| | |||||||||||| ||||  |  | |||||||||||| |||||| |||||    
T  27498808 aagccagagcaagctatgtatggacttagcccaccgaaattggcacca-gagggaatcgaacctgagacctctagaggagcaaactccaagattccaagc 27498906  T
Q  703 caaccactaagccaaccccaaatgg 727  Q
    ||||||||| | |||||||||||||    
T  27498907 caaccactaggtcaaccccaaatgg 27498931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 620 - 727
Target Start/End: Original strand, 19145505 - 19145611
Alignment:
Q  620 tgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaacc 719  Q
    |||||| | ||| |||||||||||||||||| | |||||||||||| ||||  |||| ||||||| |||| |||||  |||| ||||||||| |||||||    
T  19145505 tgtatggacttgcccaccgaaattggcacca-gagggaatcgaaccggagaccttgagaggagcatactccaagatcccaagtcaaccactaggccaacc 19145603  T
Q  720 ccaaatgg 727  Q
    ||||||||    
T  19145604 ccaaatgg 19145611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 604 - 729
Target Start/End: Original strand, 8484738 - 8484863
Alignment:
Q  604 aagccatagcaagttatgtatgaattt-gtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagc 702  Q
    |||||| |||||| | |||||||| || | |||||||||||||||||| | ||||||| |||| ||||  |    |||||||||||| |||||  |||||    
T  8484738 aagccagagcaagctctgtatgaacttagcccaccgaaattggcacca-gagggaatcaaacctgagacctctggaggagcaaactccaagatcccaagc 8484836  T
Q  703 caaccactaagccaaccccaaatggat 729  Q
    ||||||||| |||||||||||||||||    
T  8484837 caaccactaggccaaccccaaatggat 8484863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 15931149 - 15931056
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| |||| ||   ||| ||||||||| |||||  ||||| |||||||| |||||||||||||||    
T  15931149 ccaccgaaattggcacca-gagggaatcgaacctgagacttgtgaagaagcaaactccaagatcccaagctaaccactaggccaaccccaaatgg 15931056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 32059547 - 32059640
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| |  ||||||||||| ||||  ||   |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  32059547 ccaccgaaattggcacca-gaaggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 32059640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 656 - 725
Target Start/End: Original strand, 2499307 - 2499376
Alignment:
Q  656 gaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaat 725  Q
    |||||||||| |||| ||||||||||||||| || |||||  |||| || ||||||||||||||||||||    
T  2499307 gaatcgaacctgagactttgaaaggagcaaattccaagatcccaagtcagccactaagccaaccccaaat 2499376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 12317301 - 12317350
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||| |||||||||||||| |||||||||||||||    
T  12317301 aggagcaaactccaagattccaagccaaccactaggccaaccccaaatgg 12317350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 678 - 729
Target Start/End: Complemental strand, 4603823 - 4603772
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatggat 729  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||||    
T  4603823 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatggat 4603772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 11465014 - 11465107
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagaga-atttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||| |||||||||||| | || ||||||||| |||| ||||| | ||||||||||| ||||||||||||||| ||||| |||||||| ||||||    
T  11465014 ccaccaaaattggcacca-gaggaaatcgaacctgagacatttgga-ggagcaaactccaagatttcaagccaatcactaggccaacccgaaatgg 11465107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 678 - 729
Target Start/End: Original strand, 38631112 - 38631163
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatggat 729  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||||    
T  38631112 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatggat 38631163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 25587022 - 25586929
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | || ||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  25587022 ccaccgaaattggcacca-gaggaaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 25586929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 31288053 - 31288146
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||||  |||||||||||  ||||  ||   |||||||||||| |||||  |||||||||||||| |||||||| ||||||    
T  31288053 ccaccgaaattggcaccaaa-gggaatcgaacatgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaacccaaaatgg 31288146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 34310232 - 34310139
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||| |||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||| |||||| ||||||| |||||||||||||||    
T  34310232 ccaccaaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagattccaagccgaccactaggccaaccccaaatgg 34310139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 673 - 727
Target Start/End: Complemental strand, 40330684 - 40330630
Alignment:
Q  673 ttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||| |||||||||||| ||||| |||||| |||||||||||||||| |||||||    
T  40330684 ttgagaggagcaaactccaagatctcaagctaaccactaagccaacctcaaatgg 40330630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 1827681 - 1827730
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| ||||| ||||||||||||||| | |||||||||||||    
T  1827681 aggagcaaactccaagatctcaagccaaccactaggtcaaccccaaatgg 1827730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 13108600 - 13108649
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  13108600 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 13108649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 22392747 - 22392698
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  22392747 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 22392698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 678 - 726
Target Start/End: Original strand, 15971273 - 15971321
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||||||| |||||  ||||||||||||||||||||||| |||||    
T  15971273 aggagcaaactccaagatcccaagccaaccactaagccaaccctaaatg 15971321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 727
Target Start/End: Original strand, 23270675 - 23270722
Alignment:
Q  680 gagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||| |||||  |||||||||||||| |||||||||||||||    
T  23270675 gagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 23270722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 729
Target Start/End: Original strand, 25750762 - 25750813
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatggat 729  Q
    |||||||||||| |||||  |||| ||||||||| |||||||||||||||||    
T  25750762 aggagcaaactccaagatcccaagtcaaccactaggccaaccccaaatggat 25750813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 11926609 - 11926702
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | ||||||| |||| ||||  |    |||||||||||| |||||  ||| |||||||||| |||||||||||||||    
T  11926609 ccaccgaaattggcacca-gagggaatctaacctgagacctctggaggagcaaactccaagatcccaaaccaaccactaggccaaccccaaatgg 11926702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 15641212 - 15641305
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||| ||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| || ||||||||||||    
T  15641212 ccaccgaaattggctcca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggctaaccccaaatgg 15641305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 673 - 727
Target Start/End: Complemental strand, 25343290 - 25343236
Alignment:
Q  673 ttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||| ||||| | || ||||||||||| ||||||||| |||||||||||||||    
T  25343290 ttgaaaagagcacaatccaagatttcaagtcaaccactaggccaaccccaaatgg 25343236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 680 - 726
Target Start/End: Complemental strand, 42006837 - 42006791
Alignment:
Q  680 gagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||||| ||||| |||||||||||||||  |||||||||||||    
T  42006837 gagcaaactccaagatctcaagccaaccactagcccaaccccaaatg 42006791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 7085777 - 7085826
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||| |||||| |||||  ||||||||||||||||||| ||||||||||    
T  7085777 aggagaaaactccaagatcccaagccaaccactaagccagccccaaatgg 7085826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 13038605 - 13038654
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  ||| |||||||||| |||||||||||||||    
T  13038605 aggagcaaactccaagatcccaaaccaaccactaggccaaccccaaatgg 13038654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 673 - 726
Target Start/End: Original strand, 21042671 - 21042724
Alignment:
Q  673 ttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    ||||||||||||||||| |||||  ||| |||| |||||| |||||||||||||    
T  21042671 ttgaaaggagcaaactccaagatcccaaaccaatcactaaaccaaccccaaatg 21042724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 28614635 - 28614683
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||| ||||||||||||| |||||||||||||| | ||||||||||||||    
T  28614635 aggaacaaactctaagatctcaagccaaccactca-ccaaccccaaatgg 28614683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 36954864 - 36954815
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||| ||||||||| |||||||||||||||    
T  36954864 aggagcaaactccaagatcccaaggcaaccactaggccaaccccaaatgg 36954815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 5e-34; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 219 - 581
Target Start/End: Original strand, 19255817 - 19256168
Alignment:
Q  219 gtacaattccctttaagttcttgggaatacctgttggcgcaaacccaagaagattattaacttaggaacctgtaat-tagttcattcaagtctagattgt 317  Q
    ||||||| ||||||||||||||||||||| | ||| || |||| ||||||||||| | ||||||||||||||||||  | ||||||||||||||||||||    
T  19255817 gtacaatcccctttaagttcttgggaatatccgttcgcacaaatccaagaagattgtcaacttaggaacctgtaatccatttcattcaagtctagattgt 19255916  T
Q  318 cgtcttttaaaggaagattattgtcaattggaggtcgagcgacattgatcagttccgacgtctcatcttcactgcctctttatttcttctccttctttaa 417  Q
    | || |  ||||||||||| ||||||||  ||||| | ||||  |||||||  ||   | ||| ||||||| |||||| |||||||||||| |  |||||    
T  19255917 catcatggaaaggaagattcttgtcaatctgaggtagcgcgatgttgatcaactc---catcttatcttcattgcctccttatttcttctcatattttaa 19256013  T
Q  418 agatcctaagaaagtcatatatttgctaacaaagatgcagagaagattcctatggcaaggagatgaggaaattatgaaaacatcatcggtttgttggaa- 516  Q
    ||  |||| |||               ||| |||||| | ||||| |||||||||  |||||||||||||| || ||||||||||| ||||||||||||     
T  19256014 agcacctatgaa---------------aacgaagatggatagaaggttcctatggggaggagatgaggaaaataggaaaacatcatgggtttgttggaaa 19256098  T
Q  517 -----ttgttaggacaaaaaagagggtgatttaggaataaaaaactttgaattgttcaatctcgcattgc 581  Q
          |||||||| | ||||||| | ||||||||| |||||||| |||||||||||||||| |||||||    
T  19256099 gaaatctgttaggatagaaaagagagagatttaggagtaaaaaaccttgaattgttcaatcttgcattgc 19256168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 8192458 - 8192551
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||| |||||||||| | |||||||||||| ||||  |||| ||||||| |||| |||||  |||||||||||||| |||||||||||||||    
T  8192458 ccaccgacattggcacca-gagggaatcgaacctgagaccttgagaggagcacactccaagatcccaagccaaccactaggccaaccccaaatgg 8192551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 729
Target Start/End: Original strand, 4567544 - 4567639
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatggat 729  Q
    |||||||||||||||||| | || ||||||||| |||| ||   ||||||||||||  |||||  ||||||||| |||| |||||||||||||||||    
T  4567544 ccaccgaaattggcacca-gaggaaatcgaacctgagacttctgaaggagcaaacttcaagatcccaagccaactactaggccaaccccaaatggat 4567639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 614 - 722
Target Start/End: Original strand, 4618773 - 4618880
Alignment:
Q  614 aagttatgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaag 713  Q
    ||||| |||||| | ||| || ||||||||||||||| | || ||||||||| || |  |||| ||||||| |||| |||||| |||||||||||||| |    
T  4618773 aagttttgtatggacttgcccgccgaaattggcaccagg-ggaaatcgaacctgaaaccttgagaggagcatactccaagattccaagccaaccactagg 4618871  T
Q  714 ccaacccca 722  Q
    |||||||||    
T  4618872 ccaacccca 4618880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 727
Target Start/End: Complemental strand, 15038103 - 15037956
Alignment:
Q  580 gcccacttacgtgggctctgttctaagccatagcaagttatgtatgaattt-gtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaa 678  Q
    |||||||| || |||||| |||  |||||| |||||| | |||||| | || | |||||||||||||||||||  |||||||||||| ||||  ||   |    
T  15038103 gcccacttgcgggggctccgtttaaagccaaagcaagctctgtatggacttagcccaccgaaattggcaccaaa-gggaatcgaacctgagacctttgga 15038005  T
Q  679 ggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||| |||||  | || ||||||||| |||||||||||||||    
T  15038004 ggagcaaactccaagatcccgagtcaaccactaggccaaccccaaatgg 15037956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 604 - 727
Target Start/End: Original strand, 44946130 - 44946253
Alignment:
Q  604 aagccatagcaagttatgtatgaattt-gtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagc 702  Q
    |||||| |||||||| |||||| | || | |||||||||||||||||||  |||||||||||| ||||  |    |||||||||||| |||||  |||||    
T  44946130 aagccagagcaagttctgtatggacttagcccaccgaaattggcaccaaa-gggaatcgaacctgagacctctggaggagcaaactccaagatcccaagc 44946228  T
Q  703 caaccactaagccaaccccaaatgg 727  Q
    |||||||||  ||||||||||||||    
T  44946229 caaccactagaccaaccccaaatgg 44946253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 32845181 - 32845088
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| || | |||   |||||||||||| |||||  ||||| ||| |||| |||||||||||||||    
T  32845181 ccaccgaaattggcacca-gagggaatcgaacctgaaacttttggaggagcaaactccaagatcccaagctaactactaggccaaccccaaatgg 32845088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 18976576 - 18976625
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  18976576 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 18976625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 27269501 - 27269550
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  27269501 aggagcaaactcgaagatcccaagccaaccactatgccaaccccaaatgg 27269550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 637 - 727
Target Start/End: Original strand, 33827684 - 33827773
Alignment:
Q  637 cgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||| | |||||||||||| ||||  |    |||||||| ||| |||||  |||||||||||||| |||||||||||||||    
T  33827684 cgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaatctccaagatcccaagccaaccactaggccaaccccaaatgg 33827773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 6714432 - 6714481
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| ||||| |||||||||||| || ||||| |||||||||    
T  6714432 aggagcaaactccaagatctcaagccaaccattaggccaatcccaaatgg 6714481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 11941361 - 11941410
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  ||||||||||||||  ||||||||||||||    
T  11941361 aggagcaaactccaagatcccaagccaaccactagaccaaccccaaatgg 11941410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 654 - 727
Target Start/End: Original strand, 32526212 - 32526285
Alignment:
Q  654 gggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| ||||  |||| |||||||||||  |||||  |||  |||||||||||||||| ||||||||    
T  32526212 gggaatcgaacctgagaccttgagaggagcaaacttcaagatcccaaatcaaccactaagccaactccaaatgg 32526285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 604 - 727
Target Start/End: Complemental strand, 32729664 - 32729542
Alignment:
Q  604 aagccatagcaagttatgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagcc 703  Q
    |||||| |||||| | |||||| | ||| ||||||||||||||||||   |||||||||||| |||| ||||| |||||||||||| |||||  ||||||    
T  32729664 aagccagagcaagctctgtatggacttgcccaccgaaattggcaccata-gggaatcgaacctgagactttgagaggagcaaactcgaagatcccaagcc 32729566  T
Q  704 aaccactaagccaaccccaaatgg 727  Q
    |||||||| |||||||||||||||    
T  32729565 aaccactaggccaaccccaaatgg 32729542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 168291 - 168198
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaa-tttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |||||||| |||||||||||||||  |||||||||||||| |||||| ||||||||    
T  168291 ccaccgaaattggcacca-gagggaatcgaacctgagacctttgaaag-agcaaactctaagatcccaagccaaccactaggccaactccaaatgg 168198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 4621344 - 4621437
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  4621344 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 4621437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 15059509 - 15059602
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | | |||||||||| ||||  |    |||||||||||| |||||| |||||||||||||| |||||||||||||||    
T  15059509 ccaccgaaattggcacca-gagagaatcgaacctgagacctctggaggagcaaactccaagattccaagccaaccactaggccaaccccaaatgg 15059602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 24674483 - 24674390
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  24674483 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 24674390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 46607900 - 46607807
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  ||   |||||||||||| |||||  |||| ||||||||| |||||||||||||||    
T  46607900 ccaccgaaattggcacca-gagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgg 46607807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 579 - 727
Target Start/End: Complemental strand, 1138724 - 1138576
Alignment:
Q  579 tgcccacttacgtgggctctgttctaagccatagcaa-gttatgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaa 677  Q
    ||||||||| |  |||| |||||||||| || ||||| | | |||||| | |||||||||||||||||||| | | | || |||||||  |||  ||||     
T  1138724 tgcccacttgcaagggccctgttctaagtcagagcaaagctctgtatggacttgtccaccgaaattggcacta-gagagattcgaacctaagaccttgag 1138626  T
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||| |||| ||||| ||||||||||||||| | |||||||||||||    
T  1138625 aggagcacactccaagatctcaagccaaccactaggtcaaccccaaatgg 1138576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 633 - 726
Target Start/End: Complemental strand, 24122113 - 24122021
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||| | |||||  |||||||||||||||||||||||||||||    
T  24122113 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaaccccaagatcccaagccaaccactaagccaaccccaaatg 24122021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 657 - 726
Target Start/End: Complemental strand, 37349590 - 37349521
Alignment:
Q  657 aatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    ||||||||| ||||   ||| |||||||||||||||||| ||||| |||||||||| |||||||||||||    
T  37349590 aatcgaacctgagatcatgagaggagcaaactctaagatctcaagtcaaccactaaaccaaccccaaatg 37349521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 727
Target Start/End: Complemental strand, 8077791 - 8077644
Alignment:
Q  580 gcccacttacgtgggctctgttctaagccatagcaagttatgtatgaattt-gtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaa 678  Q
    |||||||| || |||| |||||  |||||| |||||| | |||||| | || | |||||||||||||||||| | | |||||||||| ||||  |    |    
T  8077791 gcccacttgcgggggccctgtttaaagccagagcaagctctgtatggacttagcccaccgaaattggcacca-gagagaatcgaacctgagacctctgga 8077693  T
Q  679 ggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  8077692 ggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 8077644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 679 - 727
Target Start/End: Complemental strand, 47091735 - 47091687
Alignment:
Q  679 ggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||||    
T  47091735 ggagcaaactccaagatctcaagccaaccactaggccaaccccaaatgg 47091687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 620 - 727
Target Start/End: Complemental strand, 24217081 - 24216975
Alignment:
Q  620 tgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaacc 719  Q
    |||||| ||||  |||||||||||||||||||  || ||||||||| ||||  |||| ||||||| |||| |||||  |||| ||||||||| | |||||    
T  24217081 tgtatggatttacccaccgaaattggcaccaaa-ggtaatcgaacctgagaccttgagaggagcacactccaagatcccaagtcaaccactaggtcaacc 24216983  T
Q  720 ccaaatgg 727  Q
    ||||||||    
T  24216982 ccaaatgg 24216975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 7197353 - 7197446
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||||||| || | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  7197353 ccaccgaaattggcatca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 7197446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 18533875 - 18533924
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| ||||| ||||||||| | |||||||||||||    
T  18533875 aggagcaaactctaagatctcaagtcaaccactatgtcaaccccaaatgg 18533924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 34778388 - 34778339
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  34778388 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 34778339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 678 - 726
Target Start/End: Complemental strand, 2272390 - 2272342
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    ||||||||||||||||||  |||| ||||||||| ||||||||||||||    
T  2272390 aggagcaaactctaagatcccaagtcaaccactaggccaaccccaaatg 2272342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 727
Target Start/End: Original strand, 20487296 - 20487390
Alignment:
Q  632 tccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||||||||||| | |||||||||||  ||||  |    |||||||||||| |||||  | ||||||||||||| ||||||||||||||    
T  20487296 tccaccgaaattggcacca-gagggaatcgaacttgagacctctggaggagcaaactccaagatcccgagccaaccactaaaccaaccccaaatgg 20487390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 727
Target Start/End: Original strand, 40802220 - 40802267
Alignment:
Q  680 gagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||| || || ||||||||||||| |||||||||||||||||    
T  40802220 gagcaaactccaatatctcaagccaaccacaaagccaaccccaaatgg 40802267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 23734206 - 23734113
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||||||| || | |||||||||||| ||||  |    ||||||||| ||||||||  ||||||||| ||||| ||||||||||||||    
T  23734206 ccaccgaaattggcatca-gagggaatcgaacctgagacctctggaggagcaaattctaagatcccaagccaactactaaaccaaccccaaatgg 23734113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 23741398 - 23741305
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||||||| || | |||||||||||| ||||  |    ||||||||| ||||||||  ||||||||| ||||| ||||||||||||||    
T  23741398 ccaccgaaattggcatca-gagggaatcgaacctgagacctctggaggagcaaattctaagatcccaagccaactactaaaccaaccccaaatgg 23741305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 637 - 727
Target Start/End: Original strand, 29057448 - 29057537
Alignment:
Q  637 cgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| ||| |||||||||||| ||||  ||   || ||||||||| |||||  ||| |||||||||| |||||||||||||||    
T  29057448 cgaaattggcac-aagagggaatcgaacctgagacctttggagcagcaaactccaagatcccaaaccaaccactaggccaaccccaaatgg 29057537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 679 - 729
Target Start/End: Complemental strand, 52592605 - 52592555
Alignment:
Q  679 ggagcaaactctaagatttcaagccaaccactaagccaaccccaaatggat 729  Q
    ||||||||||||||||| |||||||||||||||  ||||| | ||||||||    
T  52592605 ggagcaaactctaagatctcaagccaaccactagaccaactctaaatggat 52592555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 27455017 - 27455066
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  ||||||||||||||  ||||||||||||||    
T  27455017 aggagcaaactccaagatcccaagccaaccactagaccaaccccaaatgg 27455066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 1e-16; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 620 - 729
Target Start/End: Original strand, 34694670 - 34694778
Alignment:
Q  620 tgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaacc 719  Q
    |||||||||||| ||||||||||||||||||  ||| |||||||||  |||  |||| |||||||||||| |||||  |||| |||||||||  ||||||    
T  34694670 tgtatgaatttgcccaccgaaattggcaccagatgg-aatcgaacctaagaccttgagaggagcaaactccaagatcacaagtcaaccactagaccaacc 34694768  T
Q  720 ccaaatggat 729  Q
    ||||||||||    
T  34694769 ccaaatggat 34694778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 3734730 - 3734823
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  ||   |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  3734730 ccaccgaaattggcacca-gagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 3734823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 4718739 - 4718646
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |   ||||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  4718739 ccaccgaaattggcacca-gagggaatcgaacctgagacctctgaaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 4718646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 633 - 729
Target Start/End: Original strand, 27746442 - 27746537
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatggat 729  Q
    |||||||||||||||||||  |||||||||||| ||||  ||   |||||||||||| |||||  ||| |||||||||| |||||||||||||||||    
T  27746442 ccaccgaaattggcaccaaa-gggaatcgaacctgagacctttggaggagcaaactccaagatcccaaaccaaccactaggccaaccccaaatggat 27746537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 34237762 - 34237855
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  34237762 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 34237855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 20305958 - 20305909
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||||||    
T  20305958 aggagcaaactctaagatcccaagccaaccactaggccaaccccaaatgg 20305909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 21092591 - 21092542
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||||||    
T  21092591 aggagcaaactctaagatcccaagccaaccactaggccaaccccaaatgg 21092542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 728
Target Start/End: Original strand, 8387538 - 8387645
Alignment:
Q  620 tgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaacc 719  Q
    |||||| | ||| ||||| |||||||||||| | || ||||||||  ||||   ||| || ||||||||||||||| ||||| ||||||||| |||||||    
T  8387538 tgtatggacttgcccaccaaaattggcacca-gaggaaatcgaacttgagaccctgagagaagcaaactctaagatctcaagacaaccactaggccaacc 8387636  T
Q  720 ccaaatgga 728  Q
    |||||||||    
T  8387637 ccaaatgga 8387645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 725
Target Start/End: Complemental strand, 28193568 - 28193477
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaat 725  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||    
T  28193568 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaat 28193477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 620 - 727
Target Start/End: Original strand, 26168942 - 26169048
Alignment:
Q  620 tgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaacc 719  Q
    |||||||| ||| ||||||||||||||| || | || |||| |||| ||||  |||| |||||||||||| |||||  ||||| |||||||| |||||||    
T  26168942 tgtatgaacttgcccaccgaaattggcatcaggagg-aatcaaacctgagaccttgagaggagcaaactccaagatcccaagcaaaccactaggccaacc 26169040  T
Q  720 ccaaatgg 727  Q
    | ||||||    
T  26169041 ctaaatgg 26169048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 28964127 - 28964034
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||||||||||  ||| ||||||||  || |  || | |||||||||||||||||| |||| ||||||||||  ||||||||||||||    
T  28964127 ccaccgaaattggcaccagatgg-aatcgaacatgaaaccttaagaggagcaaactctaagatctcaaaccaaccactagaccaaccccaaatgg 28964034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 39349350 - 39349257
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||  |||||||||||||||    
T  39349350 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactgggccaaccccaaatgg 39349257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 2618236 - 2618187
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  2618236 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 2618187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 18532157 - 18532108
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  18532157 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 18532108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 19471659 - 19471610
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  19471659 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 19471610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 19542583 - 19542534
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  19542583 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 19542534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 19590113 - 19590162
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  19590113 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 19590162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 618 - 722
Target Start/End: Complemental strand, 41070870 - 41070767
Alignment:
Q  618 tatgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaa 717  Q
    |||||||||| ||| |||||||||||| ||||||  |||||||||||  ||||  |||| || |||| |||| |||||  |||| ||||||||| |||||    
T  41070870 tatgtatgaacttgcccaccgaaattgacaccaa-agggaatcgaacttgagaccttgagagtagcacactccaagatcccaagtcaaccactaggccaa 41070772  T
Q  718 cccca 722  Q
    |||||    
T  41070771 cccca 41070767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 680 - 725
Target Start/End: Complemental strand, 28465826 - 28465781
Alignment:
Q  680 gagcaaactctaagatttcaagccaaccactaagccaaccccaaat 725  Q
    |||| ||||||||||||||||| |||||||||| ||||| ||||||    
T  28465826 gagccaactctaagatttcaagtcaaccactaaaccaactccaaat 28465781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 42643269 - 42643318
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||| ||||||||| |||||||||||||||    
T  42643269 aggagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgg 42643318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 5189 - 5282
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  ||   |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  5189 ccaccgaaattggcacca-gagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 5282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 2751365 - 2751272
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  ||   |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  2751365 ccaccgaaattggcacca-gagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 2751272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 580 - 727
Target Start/End: Complemental strand, 7275425 - 7275278
Alignment:
Q  580 gcccacttacgtgggctctgttctaagccatagcaagttatgtatgaattt-gtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaa 678  Q
    |||||||| || |||| |||||  |||||| |||||| | |||||| | || | |||||||||||||||||| | |||||||||||| ||||  |    |    
T  7275425 gcccacttgcgggggccctgtttaaagccagagcaagctctgtatggacttagcccaccgaaattggcacca-gagggaatcgaacctgagacctctgga 7275327  T
Q  679 ggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  7275326 ggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 7275278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 22638386 - 22638293
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaa-tttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||| |||||| | |||||||||||| ||||  |||||||| ||||||||||||||| ||||| |||||||||  ||||||||||||||    
T  22638386 ccaccgaaattagcacca-gagggaatcgaacctgagacctttgaaag-agcaaactctaagatctcaagtcaaccactagaccaaccccaaatgg 22638293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 678 - 729
Target Start/End: Complemental strand, 28089866 - 28089815
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatggat 729  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||||||||||    
T  28089866 aggagcaaactccaagatctcaagccaaccactaggccaaccccaaatggat 28089815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 7175969 - 7176062
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  7175969 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 7176062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 40543017 - 40543110
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  40543017 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 40543110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 17212103 - 17212054
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  17212103 aggagcaaactccaagatcccaagccaaccactaagccaaccccaaatgg 17212054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 633 - 726
Target Start/End: Complemental strand, 22119982 - 22119890
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| ||||||||||||||    
T  22119982 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatg 22119890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 725
Target Start/End: Complemental strand, 42814958 - 42814867
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaat 725  Q
    |||||||||||| ||||| | |||||||||||| |||| ||  | |||||||||||| |||||  |||| |||||||||||||||| ||||||    
T  42814958 ccaccgaaattgacacca-gagggaatcgaacctgagacttcaagaggagcaaactccaagatcccaagtcaaccactaagccaactccaaat 42814867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 620 - 727
Target Start/End: Original strand, 8435789 - 8435895
Alignment:
Q  620 tgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaacc 719  Q
    |||||| | ||| |||||||||||||||||| | || |||||||||  |||  || |||||||||||||| |||||  |||| |||||||||  ||||||    
T  8435789 tgtatggacttgcccaccgaaattggcacca-gaggaaatcgaacctaagatcttcaaaggagcaaactccaagatcccaagtcaaccactagaccaacc 8435887  T
Q  720 ccaaatgg 727  Q
    ||||||||    
T  8435888 ccaaatgg 8435895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 620 - 727
Target Start/End: Original strand, 12211629 - 12211735
Alignment:
Q  620 tgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaacc 719  Q
    |||||| | ||||||| |||||||||||||| | || |||| |||| ||||  |||| ||||||| |||| |||||   ||||||||||||| |||||||    
T  12211629 tgtatggacttgtccatcgaaattggcacca-gaggaaatcaaacctgagatcttgagaggagcacactccaagatcctaagccaaccactaggccaacc 12211727  T
Q  720 ccaaatgg 727  Q
    ||||||||    
T  12211728 ccaaatgg 12211735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 620 - 727
Target Start/End: Original strand, 21574196 - 21574303
Alignment:
Q  620 tgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaacc 719  Q
    |||||| | ||| |||||||| ||||||||||  |||||||||||| | ||  |||| ||||||| |||| || ||  ||| |||||||||| |||||||    
T  21574196 tgtatggacttgcccaccgaagttggcaccaaaggggaatcgaacctgtgaccttgagaggagcacactccaaaatcccaaaccaaccactaggccaacc 21574295  T
Q  720 ccaaatgg 727  Q
    ||||||||    
T  21574296 ccaaatgg 21574303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 620 - 727
Target Start/End: Original strand, 23330833 - 23330939
Alignment:
Q  620 tgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaacc 719  Q
    |||||| | ||| |||||||||||||||||  | |||| ||||||| ||||  |||| ||||||| ||||||| ||  |||||||||||||| || ||||    
T  23330833 tgtatggacttgcccaccgaaattggcaccg-gagggagtcgaacctgagaccttgagaggagcacactctaaaatcccaagccaaccactaggctaacc 23330931  T
Q  720 ccaaatgg 727  Q
    ||||||||    
T  23330932 ccaaatgg 23330939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 2103149 - 2103056
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||| ||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  2103149 ccaccgaaattggctcca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 2103056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 18044201 - 18044108
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||| ||| |||||||||||| | ||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  18044201 ccaccgaaattggcac-aagagggaatcgaacctgggacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 18044108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 21217940 - 21218033
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||||||| || | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  21217940 ccaccgaaattggcatca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 21218033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 681 - 727
Target Start/End: Complemental strand, 25333466 - 25333420
Alignment:
Q  681 agcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||    
T  25333466 agcaaactccaagatcccaagccaaccactaagccaaccccaaatgg 25333420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 657 - 727
Target Start/End: Complemental strand, 40332170 - 40332100
Alignment:
Q  657 aatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||| ||||  || | |||||||||||| |||||||||||||||||||||  ||||| ||||||||    
T  40332170 aatcgaacctgagacctttagaggagcaaactccaagatttcaagccaaccactagaccaactccaaatgg 40332100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 673 - 726
Target Start/End: Complemental strand, 577734 - 577681
Alignment:
Q  673 ttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||| ||||||||||||||||  ||||| |||||||| ||||||||||||||    
T  577734 ttgaaatgagcaaactctaagatcccaagcaaaccactaggccaaccccaaatg 577681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 657 - 726
Target Start/End: Complemental strand, 1469183 - 1469114
Alignment:
Q  657 aatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    ||||||||| ||||  |||| | || ||||||| ||||||||||| ||||||||| ||||||||||||||    
T  1469183 aatcgaacctgagaccttgagatgaacaaactccaagatttcaagtcaaccactaggccaaccccaaatg 1469114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 2344349 - 2344300
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  2344349 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 2344300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 614 - 726
Target Start/End: Original strand, 3950876 - 3950988
Alignment:
Q  614 aagttatgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatt-tcaagccaaccactaa 712  Q
    |||||||| ||| | ||||||||| ||||| |||||||  |||||||||||  ||||  |||| |||||||  ||| |||||| |||||||||||||||     
T  3950876 aagttatgcatggacttgtccaccaaaattagcaccaaa-gggaatcgaacatgagacattgagaggagcacgctccaagattctcaagccaaccactag 3950974  T
Q  713 gccaaccccaaatg 726  Q
     |||||||||||||    
T  3950975 accaaccccaaatg 3950988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 19421281 - 19421232
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||||| |||||||||||||    
T  19421281 aggagcaaactccaagatcccaagccaaccactaagtcaaccccaaatgg 19421232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 23854446 - 23854397
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  23854446 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 23854397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 635 - 727
Target Start/End: Complemental strand, 11997941 - 11997850
Alignment:
Q  635 accgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||| | |||||||||||| ||||  |  | |||||||||||| |||||  ||||||||||||||  |||||| |||||||    
T  11997941 accgaaattggcacca-gagggaatcgaacctgagacctctagaggagcaaactccaagatcccaagccaaccactagcccaaccacaaatgg 11997850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 678 - 726
Target Start/End: Original strand, 13332574 - 13332622
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||||||| |||||  |||||||||||||| ||||||||||||||    
T  13332574 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatg 13332622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 633 - 725
Target Start/End: Complemental strand, 28647063 - 28646972
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaat 725  Q
    |||||||||||||||||| | |||||||||||| ||||  |||| || |||| |||| |||||  |||| ||| ||||| |||||||||||||    
T  28647063 ccaccgaaattggcacca-gagggaatcgaacctgagaccttgagagaagcacactccaagatcccaagtcaatcactaggccaaccccaaat 28646972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 611 - 723
Target Start/End: Complemental strand, 47381014 - 47380903
Alignment:
Q  611 agcaagttatgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccact 710  Q
    |||||| |||||||| | |||  ||||||||||||||| ||||| ||||||||||  | |  |||| | |||||||||  || || ||||||||||||||    
T  47381014 agcaagctatgtatggacttgcacaccgaaattggcac-aagtgagaatcgaacctaaaatcttgagaagagcaaactacaaaatctcaagccaaccact 47380916  T
Q  711 aagccaaccccaa 723  Q
    | |||||||||||    
T  47380915 aggccaaccccaa 47380903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 725
Target Start/End: Complemental strand, 27312202 - 27312155
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaat 725  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||    
T  27312202 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaat 27312155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 7799939 - 7800032
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||| ||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| | |||||||||||||    
T  7799939 ccactgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggtcaaccccaaatgg 7800032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 10091282 - 10091189
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||| ||| | |||||||||||| ||||  |    |||||||||||| |||||  ||||||||||||||  ||||||||||||||    
T  10091282 ccaccgaaattggctcca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagaccaaccccaaatgg 10091189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 633 - 726
Target Start/End: Complemental strand, 22696414 - 22696322
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    ||||||||||||||||| || ||||||| |||| ||||  |||| ||||||| |||| |||||  |||  ||||||||| ||||||||| ||||    
T  22696414 ccaccgaaattggcacc-agagggaatcaaacctgagaccttgagaggagcacactccaagatcccaaatcaaccactaggccaacccctaatg 22696322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 31713046 - 31713095
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  ||| |||||||||| |||||||||||||||    
T  31713046 aggagcaaactccaagatcccaaaccaaccactaggccaaccccaaatgg 31713095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 15360205 - 15360298
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  ||   |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  15360205 ccaccgaaattggcacca-gagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 15360298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 620 - 727
Target Start/End: Complemental strand, 9208355 - 9208249
Alignment:
Q  620 tgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaacc 719  Q
    |||||| | ||| |||||||||||||||||| | |||||||||||| ||||  |||| |||||||||||| |||||  ||| ||||||||||   |||||    
T  9208355 tgtatggacttgcccaccgaaattggcaccagg-gggaatcgaacctgagaccttgagaggagcaaactccaagatcccaatccaaccactagaacaacc 9208257  T
Q  720 ccaaatgg 727  Q
    ||||||||    
T  9208256 ccaaatgg 9208249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 34147436 - 34147343
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatt-tgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| |||| || || ||| ||||||||| |||||  |||||||||||||| |||||||||||||||    
T  34147436 ccaccgaaattggcacca-gagggaatcgaacctgagacttctggaag-agcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 34147343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 34160052 - 34159959
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatt-tgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| |||| || || ||| ||||||||| |||||  |||||||||||||| |||||||||||||||    
T  34160052 ccaccgaaattggcacca-gagggaatcgaacctgagacttctggaag-agcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 34159959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 9239065 - 9238972
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  9239065 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 9238972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 33499565 - 33499471
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatc-gaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| ||||| | ||||||| ||||| ||||  |||| |||||||||||| |||||  |||||||||||| | |||||||||||||||    
T  33499565 ccaccgaaattgacacca-gagggaatctgaacctgagaccttgagaggagcaaactccaagatcccaagccaaccaccaggccaaccccaaatgg 33499471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 12591727 - 12591634
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||| ||||||||||| | | |||||||||||| ||||  ||   |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  12591727 ccactgaaattggcacga-gagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 12591634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 22576113 - 22576064
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  22576113 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 22576064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 28672113 - 28672064
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| ||||| ||||| ||||||||| |||||||||||||||    
T  28672113 aggagcaaactccaagatctcaagtcaaccactaggccaaccccaaatgg 28672064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 3222742 - 3222834
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatt-tgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  | |||  ||||||||||  |||||  |||||||||||||| |||||||||||||||    
T  3222742 ccaccgaaattggcacca-gagggaatcgaacctgagacctctga--ggagcaaactgcaagatcccaagccaaccactaggccaaccccaaatgg 3222834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 729
Target Start/End: Complemental strand, 9843984 - 9843933
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatggat 729  Q
    |||||||||||| |||||  ||||||||||||||  ||||||||||||||||    
T  9843984 aggagcaaactccaagatcccaagccaaccactagaccaaccccaaatggat 9843933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 725
Target Start/End: Complemental strand, 10377820 - 10377714
Alignment:
Q  618 tatgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaa 717  Q
    |||||||| | ||| ||||||||||||||||||   |||||| ||||| ||||  |||| | ||||| |||| ||||| |||||||||| |||  |||||    
T  10377820 tatgtatggacttgcccaccgaaattggcaccata-gggaattgaacctgagaccttgacatgagcacactccaagatctcaagccaacaactgggccaa 10377722  T
Q  718 ccccaaat 725  Q
    ||||||||    
T  10377721 ccccaaat 10377714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 724
Target Start/End: Complemental strand, 11448961 - 11448871
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaa 724  Q
    |||||||||||||||||| | | |||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| ||||||||||||    
T  11448961 ccaccgaaattggcacca-gagagaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaa 11448871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 655 - 725
Target Start/End: Original strand, 8260486 - 8260556
Alignment:
Q  655 ggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaat 725  Q
    ||||||||| | ||||  || ||||| |||||||||||||||  ||  |||||||||||||||||||||||    
T  8260486 ggaatcgaagctgagaccttaaaaggggcaaactctaagattcaaactcaaccactaagccaaccccaaat 8260556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 13753286 - 13753237
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||   ||||||||||||| |||||||||||||||    
T  13753286 aggagcaaactccaagatccaaagccaaccactaggccaaccccaaatgg 13753237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 21982471 - 21982520
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||  |||||  |||||||||||||| |||||||||||||||    
T  21982471 aggagcaaacttcaagatcccaagccaaccactaggccaaccccaaatgg 21982520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 25852304 - 25852211
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  ||   |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  25852304 ccaccgaaattggcacca-gagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 25852211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 635 - 727
Target Start/End: Original strand, 13873404 - 13873495
Alignment:
Q  635 accgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||| | |||||||||||| ||||  ||  ||||||||||||| |||||  ||||| |||||||| |||||||||||||||    
T  13873404 accgaaattggcacca-gagggaatcgaacctgagacctttgaaggagcaaactccaagatcccaagcaaaccactaggccaaccccaaatgg 13873495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 620 - 727
Target Start/End: Original strand, 41621690 - 41621796
Alignment:
Q  620 tgtatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaacc 719  Q
    |||||| ||||| ||||| |||||||||||| | || |||| |||  ||||  |||| |||||||||||| ||||| |||||||||||| || |||||||    
T  41621690 tgtatggatttgcccaccaaaattggcacca-gaggaaatcaaacatgagaccttgagaggagcaaactccaagatctcaagccaaccattaggccaacc 41621788  T
Q  720 ccaaatgg 727  Q
    ||||||||    
T  41621789 ccaaatgg 41621796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 27528902 - 27528995
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  ||||||||||||||||||||||||| ||||    
T  27528902 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaagccaaccccagatgg 27528995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 40058959 - 40059052
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | | |||||||||| ||||  |  | |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  40058959 ccaccgaaattggcacca-gagagaatcgaacctgagacctctagaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 40059052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 46714483 - 46714389
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||||  || ||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  46714483 ccaccgaaattggcaccaaagggaaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 46714389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 52983709 - 52983616
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||| ||||||||||||| | |||||||||||| ||||  |    |||||||||||| ||||| ||||||||||||||| |||||||||||||||    
T  52983709 ccactgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatctcaagccaaccactaggccaaccccaaatgg 52983616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 54127449 - 54127542
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||| ||| |||||| ||||| ||||  ||   |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  54127449 ccaccgaaattggcac-aagagggaattgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 54127542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 580 - 729
Target Start/End: Complemental strand, 20566494 - 20566344
Alignment:
Q  580 gcccacttacgtgggctctgttctaagccatagcaagttatgtatgaa-tttgtccaccgaaattggcaccaagtgggaatcgaaccagagaa--tttga 676  Q
    |||||||| || |||||| |||  |||||| |||||| | |||||| | |||| |||||||||||||||||| | |||||||||||| ||  |  | ||     
T  20566494 gcccacttgcgggggctccgtttaaagccagagcaagctctgtatggactttgcccaccgaaattggcacca-gagggaatcgaacctgatcacctctgg 20566396  T
Q  677 aaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatggat 729  Q
    | ||||||||||| |||||  |||||||||||||| |||||||||||||||||    
T  20566395 a-ggagcaaactccaagatcccaagccaaccactaggccaaccccaaatggat 20566344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 633 - 726
Target Start/End: Complemental strand, 34835619 - 34835527
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||||||| ||||| | |||||||||||  ||||  || | ||||||||||||||||||  ||||||||||||||  |||||||||||||    
T  34835619 ccaccgaaattgacacca-gagggaatcgaacatgagaccttaagaggagcaaactctaagatcccaagccaaccactagaccaaccccaaatg 34835527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 654 - 726
Target Start/End: Complemental strand, 42245816 - 42245744
Alignment:
Q  654 gggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||||||| ||||  || | ||||||||||||||||||  |||| ||||||||| ||||||||||||||    
T  42245816 gggaatcgaacccgagacctttagaggagcaaactctaagatcccaagtcaaccactaggccaaccccaaatg 42245744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 678 - 725
Target Start/End: Complemental strand, 34722216 - 34722169
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaat 725  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||    
T  34722216 aggagcaaactccaagatcccaagccaaccactaagccaaccccaaat 34722169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 32986287 - 32986194
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||| ||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  32986287 ccaccgaaattggcacca-gagggaattgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 32986194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 34844865 - 34844958
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | | |||||||||| ||||  |    |||||||||||| ||||| |||||| |||||||| |||||||||||||||    
T  34844865 ccaccgaaattggcacca-gagagaatcgaacctgagacctctggaggagcaaactccaagatctcaagcaaaccactaggccaaccccaaatgg 34844958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 727
Target Start/End: Original strand, 5609355 - 5609402
Alignment:
Q  680 gagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||| |||||  |||||||||||||| |||||||||||||||    
T  5609355 gagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 5609402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 33696386 - 33696479
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||| ||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||| ||||||    
T  33696386 ccaccgaaattggcacca-gagggaattgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccctaaatgg 33696479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 1985882 - 1985833
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| ||||| |||||||||    
T  1985882 aggagcaaactccaagatcccaagccaaccactaggccaatcccaaatgg 1985833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 669 - 726
Target Start/End: Original strand, 3089454 - 3089511
Alignment:
Q  669 gaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||| ||||||| |||| ||||||||||  |||||| ||| |||||||||||||    
T  3089454 gaatttgagaggagcacactccaagatttcaaatcaaccattaaaccaaccccaaatg 3089511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 19660683 - 19660732
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||| ||||||||    
T  19660683 aggagcaaactccaagatcccaagccaaccactaggccaactccaaatgg 19660732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 677 - 727
Target Start/End: Complemental strand, 55287850 - 55287800
Alignment:
Q  677 aaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  55287850 aaggagcaaactctaagattccaagccaaccactatgccaaccccaaatgg 55287800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 30257716 - 30257621
Alignment:
Q  631 gtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||| |||||||||||||||  |||||||||||| ||||  ||   |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  30257716 gtccatcgaaattggcaccaaa-gggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 30257621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 8456257 - 8456350
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  8456257 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactcgaagatcccaagccaaccactaggccaaccccaaatgg 8456350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 30807260 - 30807353
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  30807260 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 30807353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 35493001 - 35492908
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  35493001 ccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 35492908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 53424283 - 53424376
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||||  |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  53424283 ccaccgaaattggcaccaaa-gggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 53424376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 638 - 727
Target Start/End: Original strand, 4252508 - 4252596
Alignment:
Q  638 gaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||||| | ||||||| |||  ||||  |||| ||||||| |||| ||||| ||||||||||||||| |||||||||||||||    
T  4252508 gaaattggcacca-gagggaatcaaacttgagaccttgagaggagcacactccaagatctcaagccaaccactaggccaaccccaaatgg 4252596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 654 - 726
Target Start/End: Complemental strand, 4462703 - 4462631
Alignment:
Q  654 gggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||||||  |||| |||  ||| ||||||||| ||||| ||||||||||||||| ||||||||||||||    
T  4462703 gggaatcgaacatgagacttttgaagtagcaaactccaagatctcaagccaaccactaggccaaccccaaatg 4462631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Complemental strand, 40940917 - 40940822
Alignment:
Q  631 gtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  ||||||||||||||  ||||||||||||||    
T  40940917 gtccaccgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagaccaaccccaaatgg 40940822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 7485632 - 7485725
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||||||| || | |||||||||||| ||||  ||   |||||||||||| |||||  |||| ||||||||| |||||||||||||||    
T  7485632 ccaccgaaattggcatca-gagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagtcaaccactatgccaaccccaaatgg 7485725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 40133556 - 40133649
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| ||||| | |||||||||||| ||||  ||   |||||||||||| || ||  |||||||||||||| |||||||||||||||    
T  40133556 ccaccgaaattgacacca-gagggaatcgaacctgagacctttggaggagcaaactccaaaatcccaagccaaccactaggccaaccccaaatgg 40133649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 46576438 - 46576345
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||| ||||||||||||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  46576438 ccactgaaattggcacca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 46576345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 48977478 - 48977385
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| |  ||||||||||| ||||  ||   |||||||||||| |||||  |||| ||||||||| |||||||||||||||    
T  48977478 ccaccgaaattggcacca-gaaggaatcgaacctgagacctttggaggagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgg 48977385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 629 - 711
Target Start/End: Original strand, 51390942 - 51391023
Alignment:
Q  629 ttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccacta 711  Q
    ||||| |||||||||||||| ||| |||||| |||   ||||  |||| |||||||||||||||||| |||||||||||||||    
T  51390942 ttgtctaccgaaattggcac-aagagggaattgaaattgagatcttgagaggagcaaactctaagatctcaagccaaccacta 51391023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 631 - 727
Target Start/End: Original strand, 18176992 - 18177087
Alignment:
Q  631 gtccaccgaaattggcaccaagtgggaatcgaaccagagaatt-tgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||||| | |||||||||||| || |  | || ||| ||||||||| ||||| ||||| ||||||||| |||||||||||||||    
T  18176992 gtccaccgaaattggcacca-gagggaatcgaacctgatacctctggaag-agcaaactccaagatctcaagtcaaccactaggccaaccccaaatgg 18177087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 34492726 - 34492775
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  34492726 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 34492775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 45529905 - 45529954
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  45529905 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 45529954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 604 - 727
Target Start/End: Original strand, 7470292 - 7470415
Alignment:
Q  604 aagccatagcaagttatgtatgaattt-gtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagc 702  Q
    |||||| |||||| | |||||||| || | |||||||||||||||  | | |||||||||||| ||||  ||   |||||||||||| ||||| |||||     
T  7470292 aagccagagcaagctctgtatgaacttagcccaccgaaattggcatta-gagggaatcgaacctgagacctttggaggagcaaactccaagatctcaagt 7470390  T
Q  703 caaccactaagccaaccccaaatgg 727  Q
    ||||||||| || ||||||||||||    
T  7470391 caaccactaggcaaaccccaaatgg 7470415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 720
Target Start/End: Original strand, 15566606 - 15566692
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccc 720  Q
    |||||||||||||||| | | |||||||||||| ||||  |    |||||||||||| ||||| ||||||||||||||| ||||||||    
T  15566606 ccaccgaaattggcacta-gagggaatcgaacctgagacctctggaggagcaaactccaagatctcaagccaaccactaggccaaccc 15566692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 729
Target Start/End: Original strand, 25344208 - 25344259
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatggat 729  Q
    |||||||||||| |||||  |||| ||||||||| |||||||||||||||||    
T  25344208 aggagcaaactcgaagatcccaagtcaaccactaggccaaccccaaatggat 25344259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 725
Target Start/End: Complemental strand, 25379807 - 25379760
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaat 725  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||    
T  25379807 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaat 25379760  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 45272523 - 45272616
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagaga-atttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||| | |||| || || | ||||||||||| |||||  ||||||||| |||| |||||||||||||||    
T  45272523 ccaccgaaattggcacca-gagggaatcgaaactgagacatctgga-ggagcaaactccaagatcccaagccaacgactaggccaaccccaaatgg 45272616  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 725
Target Start/End: Original strand, 55371381 - 55371483
Alignment:
Q  622 tatgaatttgtccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaacccc 721  Q
    |||||| |||||| ||||||||||||||||  |||||||||||  ||||  |||| || |||| |||| || ||  |||||||||||||| ||||||| |    
T  55371381 tatgaacttgtccgccgaaattggcaccaa-agggaatcgaacatgagaccttgagagaagcatactccaaaatcgcaagccaaccactaggccaacctc 55371479  T
Q  722 aaat 725  Q
    ||||    
T  55371480 aaat 55371483  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 25289821 - 25289914
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||| | | |||||||||||| ||||  |    |||||||||||| |||||  ||||||||||||||  ||||||||||||||    
T  25289821 ccaccgaaattggcacta-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagaccaaccccaaatgg 25289914  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 673 - 726
Target Start/End: Original strand, 6041818 - 6041871
Alignment:
Q  673 ttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||| |||||||||||| ||||||||||| |||||| || | ||||||||||||    
T  6041818 ttgagaggagcaaactccaagatttcaagtcaaccattagggcaaccccaaatg 6041871  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 21362989 - 21362940
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||| ||||||||| |||||||||||||||    
T  21362989 aggagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgg 21362940  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 633 - 726
Target Start/End: Complemental strand, 26158908 - 26158816
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||||||||||||||  ||||||  |||| ||||  |||| ||||||| |||| ||||| ||||||||||   || ||||||||||||||    
T  26158908 ccaccgaaattggcaccaaa-gggaatgaaacctgagaccttgagaggagcacactccaagatctcaagccaacacataggccaaccccaaatg 26158816  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 31537989 - 31538038
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||   ||||||||||||| |||||||||||||||    
T  31537989 aggagcaaactccaagatcctaagccaaccactaggccaaccccaaatgg 31538038  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 50583038 - 50582989
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  ||| |||||||||| |||||||||||||||    
T  50583038 aggagcaaactccaagatcccaaaccaaccactaggccaaccccaaatgg 50582989  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 52455800 - 52455849
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  | |||||||||||| |||||||||||||||    
T  52455800 aggagcaaactccaagatccctagccaaccactaggccaaccccaaatgg 52455849  T

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Target: scaffold0070 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Complemental strand, 40415 - 40322
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  |   ||||||||||||| |||||   ||||||||||||| |||||||||||||||    
T  40415 ccaccgaaattggcacca-gagggaatcgaacctgagacctctgaaggagcaaactccaagatcctaagccaaccactaggccaaccccaaatgg 40322  T

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Target: scaffold0026 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 633 - 727
Target Start/End: Original strand, 97473 - 97566
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||||||||| | |||||||||||| ||||  ||   |||||||||||  |||||  |||||||||||||| |||||||||||||||    
T  97473 ccaccgaaattggcacca-gagggaatcgaacctgagacctttggaggagcaaactacaagatcccaagccaaccactaggccaaccccaaatgg 97566  T

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Target: scaffold0623 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 633 - 726
Target Start/End: Original strand, 1163 - 1255
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||||||||| ||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| ||||||||||||||    
T  1163 ccaccgaaattggctcca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatg 1255  T

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Target: scaffold0366 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 633 - 726
Target Start/End: Original strand, 9406 - 9498
Alignment:
Q  633 ccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||||||||| ||| | |||||||||||| ||||  |    |||||||||||| |||||  |||||||||||||| ||||||||||||||    
T  9406 ccaccgaaattggctcca-gagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatg 9498  T

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Target: scaffold0366; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 678 - 726
Target Start/End: Original strand, 12151 - 12199
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||||||| |||||  |||||||||||||| ||||||||||||||    
T  12151 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatg 12199  T

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Target: scaffold0199 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 8558 - 8607
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||    
T  8558 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgg 8607  T

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Target: scaffold0191 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 24949 - 24880
Alignment:
Q  8 ctttgataccacaatgttgcaaaaattgagagcacgggttctggtcttgaacgagtctcatgccaagcca 77  Q
    ||||||||||||| |||||||| || ||||| || ||||| |||| ||||||||||| |||| |||||||    
T  24949 ctttgataccacagtgttgcaataaatgagaacatgggttttggtattgaacgagtcgcatgtcaagcca 24880  T

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Target: scaffold0459 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 678 - 726
Target Start/End: Original strand, 10844 - 10892
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatg 726  Q
    |||||||||||| |||||  |||||||||||||| ||||||||||||||    
T  10844 aggagcaaactccaagatcccaagccaaccactaggccaaccccaaatg 10892  T

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Target: scaffold0460 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 727
Target Start/End: Original strand, 8285 - 8379
Alignment:
Q  632 tccaccgaaattggcaccaagtgggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    ||||||||||||||||||| | |||||||||||  ||||  |    |||||||||||| |||||  | ||||||||||||| ||||||||||||||    
T  8285 tccaccgaaattggcacca-gagggaatcgaacttgagacctctggaggagcaaactccaagatcccgagccaaccactaaaccaaccccaaatgg 8379  T

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Target: scaffold0328 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Complemental strand, 15037 - 14988
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  || ||||||||||| |||||||||||||||    
T  15037 aggagcaaactccaagatcccaggccaaccactaggccaaccccaaatgg 14988  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 41795 - 41844
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||| ||||||||| |||||||||||||||    
T  41795 aggagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgg 41844  T

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Target: scaffold0051 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 727
Target Start/End: Original strand, 53022 - 53071
Alignment:
Q  678 aggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| |||||  |||||||||||||| ||||| |||||||||    
T  53022 aggagcaaactccaagatcccaagccaaccactaggccaatcccaaatgg 53071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 654 - 727
Target Start/End: Complemental strand, 27846 - 27773
Alignment:
Q  654 gggaatcgaaccagagaatttgaaaggagcaaactctaagatttcaagccaaccactaagccaaccccaaatgg 727  Q
    |||||||||||| ||||  |||| |||||||||||| || ||  ||| ||||||||||  ||||||||||||||    
T  27846 gggaatcgaacccgagaccttgagaggagcaaactccaaaatcccaaaccaaccactagaccaaccccaaatgg 27773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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