View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4412-Insertion-7 (Length: 152)
Name: NF4412-Insertion-7
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4412-Insertion-7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 7e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 7e-75
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 37892347 - 37892202
Alignment:
| Q |
7 |
aaataacaaaagatcaatcaatttcaatatattactcttatatcttaagttgcatacacagttaaaaggcacagtaacactacaagctcaacttttgaat |
106 |
Q |
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| T |
37892347 |
aaataacaaaagatcaatcaatttcaatatattactcttatatcttaagttgcatacacagttaaaaggcacagtaacactacaagctcaacttttgaat |
37892248 |
T |
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| Q |
107 |
tcgattttgagataacatgctataactttacctcttccgtgctttc |
152 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37892247 |
tcgattttgagacaacatgctataactttacctcttccgtgctttc |
37892202 |
T |
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Target: chr5; HSP #2
Raw Score: 114; E-Value: 4e-58
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 37187496 - 37187351
Alignment:
| Q |
7 |
aaataacaaaagatcaatcaatttcaatatattactcttatatcttaagttgcatacacagttaaaaggcacagtaacactacaagctcaacttttgaat |
106 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
37187496 |
aaataacaaaagaccaatcaatttcaatatattactcttatacattaagttgcatacacagttaaaaggcacagtaacattacaagctcaacttctgaat |
37187397 |
T |
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| Q |
107 |
tcgattttgagataacatgctataactttacctcttccgtgctttc |
152 |
Q |
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|||||||||||| |||| |||||||||||||||||| ||||||||| |
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| T |
37187396 |
tcgattttgagacaacaggctataactttacctctttcgtgctttc |
37187351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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