View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4412_low_1 (Length: 851)
Name: NF4412_low_1
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4412_low_1 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 775; Significance: 0; HSPs: 15)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 775; E-Value: 0
Query Start/End: Original strand, 10 - 832
Target Start/End: Original strand, 47712866 - 47713688
Alignment:
| Q |
10 |
aggagcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47712866 |
aggatcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata |
47712965 |
T |
|
| Q |
110 |
gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47712966 |
gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcat |
47713065 |
T |
|
| Q |
210 |
tatccgcagcaaacttaagacgagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47713066 |
tatccgcagcaaacttaagacgagaatcacttgatgcagctatttctctcagtttcctcatcaagtttccaagaactcgattaaatggatccacctcggt |
47713165 |
T |
|
| Q |
310 |
tacattgttcgggtttgacatataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaacca |
409 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713166 |
tacattgttcgggttcgacatataaaactttggtgaccattcaagaatgccaaatattgattggtttgagtaacgcaacatgtagtcctcataccaacca |
47713265 |
T |
|
| Q |
410 |
attgcttctttgtggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtc |
509 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713266 |
attgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtc |
47713365 |
T |
|
| Q |
510 |
caatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgag |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713366 |
caatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgag |
47713465 |
T |
|
| Q |
610 |
gttgttttgataggtgctattggctgtgtagttgccattattgtttaaacaagagtagcgcacaaaatctggttggccctgggcttgagatacgataatg |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713466 |
gttgttttgataggtgctattggctgtgtagttgccattattgtttatacaagagtagcgcacaaaatctggttggccctgggcttgagatacgataatg |
47713565 |
T |
|
| Q |
710 |
ataataaaaaggagaaaagagtaaaaggaaaataatagcttgctagaaacaattgtcattctgatatattgatctctgtcttggaacaagaacaggttat |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713566 |
ataataaaaaggagaaaagagtaaaaggaaaataatagcttgctagaaacaattgtcattctgatatattgatctctgtcttggaacaagaacaggttat |
47713665 |
T |
|
| Q |
810 |
taagaaatggaggattgaagctt |
832 |
Q |
| |
|
|||| | |||| ||||||||||| |
|
|
| T |
47713666 |
taagtagtggatgattgaagctt |
47713688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 31 - 832
Target Start/End: Original strand, 47745479 - 47746271
Alignment:
| Q |
31 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg |
130 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| |||||||||||||||| | || ||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
47745479 |
ttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttataaaaaaaacttggagtttctgaaatagcacgctctaaacaatcattg |
47745578 |
T |
|
| Q |
131 |
caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac |
230 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | | |||||||||| ||| |
|
|
| T |
47745579 |
caatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaaa---------gttgcattagcggtagcaaacttacgac |
47745669 |
T |
|
| Q |
231 |
gagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggttacattgttcgggtttgacat |
330 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||| |||||||| || |||| ||||||||||| | ||| || | |
|
|
| T |
47745670 |
gagaatcacctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgagccacatcggttacatttctattgttccactt |
47745769 |
T |
|
| Q |
331 |
ataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttgtggtttgga |
430 |
Q |
| |
|
|||| | ||| || | ||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||| ||||| |
|
|
| T |
47745770 |
ataatatgaaaatgaagtatccataatgccaaatattgatcggtttgagtaacgcaacatgcagttatcataccaactaattgcttctttttgggttgga |
47745869 |
T |
|
| Q |
431 |
caaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcgg |
530 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
47745870 |
caaagttttgtgagaagaactcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagtccaatggcgtttactttatcag |
47745969 |
T |
|
| Q |
531 |
tgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctatt |
630 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47745970 |
tgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctatt |
47746069 |
T |
|
| Q |
631 |
ggctgtgtagttgccattattgtttaaacaagagtagcgcacaaaatctggttggccctgggcttgagatacgataatgataataaaaaggagaaaagag |
730 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47746070 |
ggctgtgtagttgccattattgtttatacaatagttgcgcaaaaaatttggttggccttgggcttgagatacgataatgataataaaaaggagaaaagag |
47746169 |
T |
|
| Q |
731 |
taaaaggaaaataatagcttgctagaaacaattgtcattctgatatattgatctctgtcttggaacaagaacaggttattaagaaatggaggattgaagc |
830 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47746170 |
taaagggaaaataatagcttgctagatacaattgtcattgtgatatattgatctctgtcttggaacaagaacaggtaattaagaaatggaggattgaagc |
47746269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 25 - 832
Target Start/End: Original strand, 47717684 - 47718479
Alignment:
| Q |
25 |
atagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaa |
124 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||||||| |||| ||| |||| |||||||| | | ||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
47717684 |
atagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctctaaacaa |
47717783 |
T |
|
| Q |
125 |
tcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaact |
224 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| | | |||||||| |
|
|
| T |
47717784 |
tcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaa---------gttgcattagcggtagcaaact |
47717874 |
T |
|
| Q |
225 |
taagacgagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggttacattgttcgggtt |
324 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||| ||| | | |
|
|
| T |
47717875 |
tacgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatttttcaaggt |
47717974 |
T |
|
| Q |
325 |
tgacatataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttgtgg |
424 |
Q |
| |
|
|| | || | ||||| ||| | || ||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||| |
|
|
| T |
47717975 |
ccactttaaatatgaaggtgaagcttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttgg |
47718074 |
T |
|
| Q |
425 |
tttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactt |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
47718075 |
tttggacaaagttttgtgagaagaactcttgaatcattgagacaacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactt |
47718174 |
T |
|
| Q |
525 |
tgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggt |
624 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
47718175 |
tgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggt |
47718274 |
T |
|
| Q |
625 |
gctattggctgtgtagttgccattattgtttaaacaagagtagcgcacaaaatctggttggccctgggcttgagatacgataatgataataaaaaggaga |
724 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
47718275 |
gctattggctgtgtagttgccattattgtttatacaatagttgcgcaaaaaatttggttggccttgggcttgagatacgataatgataataaaa---aga |
47718371 |
T |
|
| Q |
725 |
aaagagtaaaaggaaaataatagcttgctagaaacaattgtcattctgatatattgatctctgtcttggaacaagaacaggttattaagaaatggaggat |
824 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47718372 |
acagaataaaaggaaaataatagcttgctagaaacagttgtcattcgtgtatattgatctctgtcttggaacaagaacaggtaattaagaaatggaggat |
47718471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 31 - 795
Target Start/End: Original strand, 47759802 - 47760561
Alignment:
| Q |
31 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg |
130 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| |||||||||||||| ||| || ||||||| ||||| |||||| |||||||||| |||| |
|
|
| T |
47759802 |
ttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattattg |
47759901 |
T |
|
| Q |
131 |
caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac |
230 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||| ||| |
|
|
| T |
47759902 |
caatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacgac |
47760001 |
T |
|
| Q |
231 |
gagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggttacattgttcgggtttgacat |
330 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||| | |||||| |||||||||| |||||||| | ||| |||| |
|
|
| T |
47760002 |
gagaatcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaacttggttaaattgatccacctctgttacattatatatgttccacat |
47760101 |
T |
|
| Q |
331 |
ataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttgtggtttgga |
430 |
Q |
| |
|
||||||||||||||| | ||| | || ||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
47760102 |
ataaaactttggtgaaccttccataacgccgaatattgatcggtttgagtaacgcaacatgcagttatcataccaaccaattgcttctttttggtttgga |
47760201 |
T |
|
| Q |
431 |
caaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcgg |
530 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
47760202 |
caaagttttgtgagaagaactcttgaatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcag |
47760301 |
T |
|
| Q |
531 |
tgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctatt |
630 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||||||||||| | ||||||||| |||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
47760302 |
tgttttggccataagaaatattgtagaaaccgtagttgatttctgcgttggaagttagattggacaaaacggtgttgaggttgttttgataggtgctatt |
47760401 |
T |
|
| Q |
631 |
ggctgtgtagttgccattattgtttaaacaagagtagcgcacaaaatctggttggccctgggcttgagatacgataatgataataaaaaggagaaaagag |
730 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||| | || |||||| |||||| | | |||||||||||| || |||| | || ||||||||| |
|
|
| T |
47760402 |
ggctgtgtagttgccattatcgtttttacaaaagttgtacagaaaatcaggttgggctttggcttgagatac---aaaagtaatgagaaagagaaaagaa |
47760498 |
T |
|
| Q |
731 |
taaaaggaaaataatagcttgctagaaacaattgtcattctgatatattgatctctgtcttggaa |
795 |
Q |
| |
|
||||||| || ||||| ||||| ||||||||||| ||| ||| |||||| |||||||||||||| |
|
|
| T |
47760499 |
taaaaggtaagtaataacttgcaagaaacaattgccatgctg--atattgctctctgtcttggaa |
47760561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 485 - 642
Target Start/End: Original strand, 6512957 - 6513114
Alignment:
| Q |
485 |
ggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaag |
584 |
Q |
| |
|
||||| ||||||||||| || |||||||| ||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||| | ||||||||| |
|
|
| T |
6512957 |
ggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaag |
6513056 |
T |
|
| Q |
585 |
tgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagtt |
642 |
Q |
| |
|
||||| |||||| ||||||||| ||||| || ||||||||||| |||| ||||||||| |
|
|
| T |
6513057 |
tgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagtt |
6513114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 359 - 612
Target Start/End: Complemental strand, 6521811 - 6521552
Alignment:
| Q |
359 |
ccaaatattgatcggtttgagtaacgcaacatgtagtcctcat------accaaccaattgcttctttgtggtttggacaaagttttgtgagaagaactc |
452 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | || |||| |||| |||||||||||||| ||||| ||||| ||| ||| |||||||| |
|
|
| T |
6521811 |
ccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacag |
6521712 |
T |
|
| Q |
453 |
ttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaatt |
552 |
Q |
| |
|
|||||| ||||| | | | | ||| ||| |||| ||||||||||| || |||||||| |||||||||||||| ||||| | ||||||||| |||| |
|
|
| T |
6521711 |
ttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgtttccataagaggaatt |
6521612 |
T |
|
| Q |
553 |
gtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggtt |
612 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
6521611 |
atagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtt |
6521552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 480 - 647
Target Start/End: Original strand, 6507051 - 6507218
Alignment:
| Q |
480 |
catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgtt |
579 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||| |||||||||| |||| ||||| |||||||| || | |||| |
|
|
| T |
6507051 |
catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgtt |
6507150 |
T |
|
| Q |
580 |
ggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagttgccat |
647 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||| | || |||||||| |||| ||||||||| |||| |
|
|
| T |
6507151 |
ggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccat |
6507218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 493 - 640
Target Start/End: Original strand, 6517364 - 6517511
Alignment:
| Q |
493 |
atctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattg |
592 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| ||||| |||||||||| | || ||||| ||||||||||||| |||||||||||||| || |
|
|
| T |
6517364 |
atctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgagaatg |
6517463 |
T |
|
| Q |
593 |
gataaaagggtgttgaggttgttttgataggtgctattggctgtgtag |
640 |
Q |
| |
|
|||||||||||||| ||||| | || |||||||| |||| ||||||| |
|
|
| T |
6517464 |
gataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtag |
6517511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 521 - 642
Target Start/End: Original strand, 6500263 - 6500384
Alignment:
| Q |
521 |
actttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgat |
620 |
Q |
| |
|
||||||||| |||||| ||||| || ||||||||||| ||||||||||||| ||||||||||||||| | |||||||| ||||||||||| || | || |
|
|
| T |
6500263 |
actttgtcgctgttttcgccatgtgaaaaattgtagaaaccgtagttgatttctgtgttggaagtgagagttgataaaagtgtgttgaggtttttgtcat |
6500362 |
T |
|
| Q |
621 |
aggtgctattggctgtgtagtt |
642 |
Q |
| |
|
|||||||||| | ||||||||| |
|
|
| T |
6500363 |
aggtgctatttgttgtgtagtt |
6500384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 398 - 594
Target Start/End: Complemental strand, 6523768 - 6523572
Alignment:
| Q |
398 |
tcataccaaccaattgcttctttgtggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctc |
497 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| | ||||||| |||||| ||||||| | ||| | || | | | |||||||| | |
|
|
| T |
6523768 |
tcataccaaccaattgcttctttttggtttggacaaagctgtgtgagattgttacttgaaccattgaggcaactaagacactcgtttgtcttaacatcgc |
6523669 |
T |
|
| Q |
498 |
ctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattgga |
594 |
Q |
| |
|
||||||| || ||||| ||||||||||||| ||||||| || | |||||||||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
6523668 |
ctctgcaaagaccaattgcgtttactttgtttgtgttttcaccgtttgagaaattgtagaaaccgtagttgatttgcgtgttggaagtgagagtgga |
6523572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 545 - 642
Target Start/End: Complemental strand, 47777937 - 47777840
Alignment:
| Q |
545 |
gagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagtt |
642 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||| ||||| |||||||||| ||||||||||| ||| |||||||| || | ||||||||| |
|
|
| T |
47777937 |
gagaaattgtagaaaccgtaattgatttgtgtgttggaaatgagagtggataaaagtgtgttgaggtttgtttcgtaggtgctgtttgttgtgtagtt |
47777840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 538 - 645
Target Start/End: Complemental strand, 47772983 - 47772876
Alignment:
| Q |
538 |
gccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtg |
637 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||| || | |||| ||| |||| ||||| || || |||||||| | |||||||||||||| |||| |
|
|
| T |
47772983 |
gccatatgagaaattgtagaaaccgtagttgatttctgtatgagaagaaagactggacaaaagagttttaaggttgttgtcataggtgctattggatgtg |
47772884 |
T |
|
| Q |
638 |
tagttgcc |
645 |
Q |
| |
|
|||||||| |
|
|
| T |
47772883 |
tagttgcc |
47772876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 47704889 - 47704941
Alignment:
| Q |
31 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttat |
83 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
47704889 |
ttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttat |
47704941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 445
Target Start/End: Complemental strand, 47778127 - 47778037
Alignment:
| Q |
361 |
aaatattgatcggtttgagtaacgcaacatgtagt------cctcataccaaccaattgcttctttgtggtttggacaaagttttgtgaga |
445 |
Q |
| |
|
||||||||| |||| |||||||||||||||| | | |||| ||||||||||||||||| || | |||||||||||||| ||||||| |
|
|
| T |
47778127 |
aaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggacaaagttgtgtgaga |
47778037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 47811779 - 47811738
Alignment:
| Q |
143 |
gacaaatcaggtgtacactgcacaagaccatatatggtttga |
184 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||| |
|
|
| T |
47811779 |
gacaaatcaggtgtacactgaacaagaccatttattgtttga |
47811738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 403 - 650
Target Start/End: Original strand, 28861785 - 28862032
Alignment:
| Q |
403 |
ccaaccaattgcttctttgtggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctg |
502 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| || ||| |||||||||||||||| || |||| |||||||||| ||| || ||||||||||||||| |
|
|
| T |
28861785 |
ccaaccaattgcttctttttggttaggacatttttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctg |
28861884 |
T |
|
| Q |
503 |
cagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaaggg |
602 |
Q |
| |
|
|| | ||| ||||||| |||||||| | ||| || ||| | ||||| |||||||| |||||| |||||| ||||||||||| ||| | |||||||| | |
|
|
| T |
28861885 |
cataatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtg |
28861984 |
T |
|
| Q |
603 |
tgttgaggttgttttgataggtgctattggctgtgtagttgccattat |
650 |
Q |
| |
|
|||||||||| | |||||| ||||| || ||||||||||||||||| |
|
|
| T |
28861985 |
tgttgaggttttgttgatatgtgctgttttttgtgtagttgccattat |
28862032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 406 - 650
Target Start/End: Original strand, 28856511 - 28856755
Alignment:
| Q |
406 |
accaattgcttctttgtggtttggacaaagttttgtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcag |
505 |
Q |
| |
|
||||||||||||||| | |||||||||| || ||| |||||||||||||||| || |||| |||||||||| ||| || ||||||||||||||||| |
|
|
| T |
28856511 |
accaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcat |
28856610 |
T |
|
| Q |
506 |
agtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgt |
605 |
Q |
| |
|
| ||| ||||||| |||||||| | ||| || ||| | ||||| |||||||| |||||| |||||| ||||||||||| ||| | |||||||| |||| |
|
|
| T |
28856611 |
aatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgt |
28856710 |
T |
|
| Q |
606 |
tgaggttgttttgataggtgctattggctgtgtagttgccattat |
650 |
Q |
| |
|
||||||| | |||||| ||||| || ||||||||||| ||||| |
|
|
| T |
28856711 |
tgaggttttgttgatatgtgctgttttttgtgtagttgctattat |
28856755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 359 - 627
Target Start/End: Original strand, 28831268 - 28831536
Alignment:
| Q |
359 |
ccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttgtggtttggacaaagttttgtgagaagaactcttgaat |
458 |
Q |
| |
|
|||||||| || || || ||||||||||||||| | | ||| |||| |||||||||||| |||||||||||| || ||| |||||||||||||||| |
|
|
| T |
28831268 |
ccaaatatggaccgattggagtaacgcaacatgcaattgtcagtccaaataattgcttctttttggtttggacaattttgtgttagaagaactcttgaat |
28831367 |
T |
|
| Q |
459 |
cattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaa |
558 |
Q |
| |
|
|| ||| || ||||||| ||| || |||||||||||||| || | ||| ||||||| |||||||| | || || ||| || ||||| |||||||| |
|
|
| T |
28831368 |
tgttaagataacggcggcaatcatttggattaacatctcctctacataatcctatggcgtatactttgttgttgcctttgccgtatgagaagttgtagaa |
28831467 |
T |
|
| Q |
559 |
cccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgct |
627 |
Q |
| |
|
|||||| |||||| ||||||||||| ||| | |||||||| ||||||||||| | |||||| ||||| |
|
|
| T |
28831468 |
accgtaggtgatttctgtgttggaagttagagttgataaaagtgtgttgaggttttgttgatatgtgct |
28831536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 509 - 642
Target Start/End: Original strand, 27371748 - 27371881
Alignment:
| Q |
509 |
ccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttga |
608 |
Q |
| |
|
|||||||| |||| |||||| | || ||||||||| ||||||||||| || |||||||| |||| |||| ||||| || | || ||| |||||| || | |
|
|
| T |
27371748 |
ccaatggcctttattttgtctgggtgttggccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaa |
27371847 |
T |
|
| Q |
609 |
ggttgttttgataggtgctattggctgtgtagtt |
642 |
Q |
| |
|
||||||| | |||||||||||| |||||||||| |
|
|
| T |
27371848 |
ggttgttgtcgtaggtgctattgactgtgtagtt |
27371881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 28830931 - 28830976
Alignment:
| Q |
31 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatc |
76 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||||||| |
|
|
| T |
28830931 |
ttcatatctaatattacaacttggtttcataactctagcaccaatc |
28830976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 28875835 - 28875896
Alignment:
| Q |
359 |
ccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttcttt |
420 |
Q |
| |
|
||||||||||| ||| |||||||||||| |||| ||| ||| |||||||||||||||||| |
|
|
| T |
28875835 |
ccaaatattgaccggcttgagtaacgcagcatgcagttgtcaatccaaccaattgcttcttt |
28875896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 480 - 647
Target Start/End: Original strand, 1076 - 1243
Alignment:
| Q |
480 |
catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgtt |
579 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||| |||||||||| |||| ||||| |||||||| || | |||| |
|
|
| T |
1076 |
catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgtt |
1175 |
T |
|
| Q |
580 |
ggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagttgccat |
647 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||| | || |||||||| |||| ||||||||| |||| |
|
|
| T |
1176 |
ggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccat |
1243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 480 - 647
Target Start/End: Original strand, 8730 - 8897
Alignment:
| Q |
480 |
catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaacccgtagttgatttgagtgtt |
579 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||| |||||||||| |||| ||||| |||||||| || | |||| |
|
|
| T |
8730 |
catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgtt |
8829 |
T |
|
| Q |
580 |
ggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagttgccat |
647 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||| | || |||||||| |||| ||||||||| |||| |
|
|
| T |
8830 |
ggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccat |
8897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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