View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4412_low_10 (Length: 333)
Name: NF4412_low_10
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4412_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 33790036 - 33790350
Alignment:
| Q |
1 |
aacttcctttctatacattccctgcaaactgttaccaaactcagagatttaggcatatattcatcgcataaaagacaaagatgaaaacaaggcattatat |
100 |
Q |
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| T |
33790036 |
aacttcctttctatacattccctgcaaactgttaccaaactcagagatttaggcatatattcatcgcataaaagacaaagatgaaaacaaggcattatat |
33790135 |
T |
|
| Q |
101 |
tcatcatggcctagtttcaagcatagttgttatacacaagtatttgtcacaaaatctaaaataactaatcataaaaacaaggtcaaagaactccaaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33790136 |
tcatcatggcctagtttcaagcatagttgttatacacaagtatttgtcacaaaatctaaaataactaatcataaaaacaaggtcaaagaactccaaagat |
33790235 |
T |
|
| Q |
201 |
tcatcatgcagatatcacattatgcatacaaattgtaaaaacactatcagaaaatgttttcctcttaccacattatgtataaatttccataatagaaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33790236 |
tcatcatgcagatatcacattatgcatacaaattgtaaaaacactatcagaaaatgttttcctcttaccacattatgtataaatttccataatagaaaat |
33790335 |
T |
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| Q |
301 |
aatttgccacttaca |
315 |
Q |
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||||||||||||||| |
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| T |
33790336 |
aatttgccacttaca |
33790350 |
T |
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