View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4412_low_11 (Length: 285)
Name: NF4412_low_11
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4412_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 5822904 - 5823184
Alignment:
| Q |
1 |
ggtaaataaaatagtagcatgaacaaacaattgtgaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatg |
100 |
Q |
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| T |
5822904 |
ggtaaataaaatagt-gcattaacaaacaattgttaccttctccagcagccaaattaaagaaaaggtcaacaatattgggacacttagagaaacaagatg |
5823002 |
T |
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| Q |
101 |
gagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
5823003 |
gagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttctacacattcgtctgt |
5823102 |
T |
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| Q |
201 |
ctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattgatattcttctca |
282 |
Q |
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| T |
5823103 |
ctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattgatattcttctca |
5823184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 5828973 - 5828693
Alignment:
| Q |
1 |
ggtaaataaaatagtagcatgaacaaacaattgtgaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatg |
100 |
Q |
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||||||||||||||| |||| ||||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828973 |
ggtaaataaaatagt-gcattaacaaacaagtcttaccttctccagcagccaaattaaagaaaaggtcaacaatattgggacacttagagaaacaagatg |
5828875 |
T |
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| Q |
101 |
gagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgt |
200 |
Q |
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| T |
5828874 |
gagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgt |
5828775 |
T |
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| Q |
201 |
ctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattgatattcttctca |
282 |
Q |
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| T |
5828774 |
ctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattgatattcttctca |
5828693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 40 - 271
Target Start/End: Original strand, 5832820 - 5833051
Alignment:
| Q |
40 |
tctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaag |
139 |
Q |
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| T |
5832820 |
tctccagcagccatattgaagaaaaggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagtttgccggtgaattgtggctcaaagaaag |
5832919 |
T |
|
| Q |
140 |
catcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcaga |
239 |
Q |
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| T |
5832920 |
catcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactataacttcaga |
5833019 |
T |
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| Q |
240 |
tgttcgacattgatactcggtttcaccattga |
271 |
Q |
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| T |
5833020 |
tgttctacattgatactcaatttcaccattga |
5833051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 258
Target Start/End: Original strand, 24038436 - 24038658
Alignment:
| Q |
36 |
accttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaag |
135 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||| || || | ||||||||| |||||||| ||| |||||| | ||||||| |
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| T |
24038436 |
accttccccagcagccaaattgaagtaaaggtcaacaatattggggcaattttggtaacaagatgatgaacaaagtttggctgtgaattgtggctcaagc |
24038535 |
T |
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| Q |
136 |
aaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataactt |
235 |
Q |
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| T |
24038536 |
aatgcatcggaagaaattccgacaaaattcctttcaactccacatgctttcacacattgatctgtctctatgtatcccgccattcgctccaacactactt |
24038635 |
T |
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| Q |
236 |
cagatgttcgacattgatactcg |
258 |
Q |
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| T |
24038636 |
ctgatgtcctacattgatactcg |
24038658 |
T |
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