View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4412_low_12 (Length: 284)

Name: NF4412_low_12
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4412_low_12
NF4412_low_12
[»] chr4 (5 HSPs)
chr4 (50-259)||(33695575-33695784)
chr4 (16-51)||(22567150-22567185)
chr4 (17-51)||(27934530-27934564)
chr4 (16-49)||(4983090-4983123)
chr4 (17-49)||(9400519-9400551)
[»] scaffold0205 (1 HSPs)
scaffold0205 (16-51)||(21007-21042)
[»] chr6 (2 HSPs)
chr6 (16-51)||(14196613-14196648)
chr6 (16-48)||(14196979-14197011)
[»] chr5 (2 HSPs)
chr5 (16-51)||(6758229-6758264)
chr5 (18-51)||(41930514-41930547)
[»] chr1 (2 HSPs)
chr1 (16-51)||(28011732-28011767)
chr1 (16-50)||(24905166-24905200)
[»] chr8 (4 HSPs)
chr8 (16-50)||(11674694-11674728)
chr8 (16-50)||(11675058-11675092)
chr8 (16-50)||(23505051-23505085)
chr8 (16-50)||(23507820-23507854)
[»] chr7 (2 HSPs)
chr7 (16-50)||(32680594-32680628)
chr7 (16-50)||(32680959-32680993)
[»] chr3 (4 HSPs)
chr3 (16-50)||(36314297-36314331)
chr3 (16-50)||(48322741-48322775)
chr3 (16-49)||(36314662-36314695)
chr3 (18-50)||(48322376-48322408)
[»] chr2 (3 HSPs)
chr2 (16-50)||(14900495-14900529)
chr2 (17-51)||(14900846-14900880)
chr2 (128-165)||(6334884-6334921)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 50 - 259
Target Start/End: Original strand, 33695575 - 33695784
Alignment:
Q  50 ttaaaaaattatcaacgaaaaagaatatgaaatgctgcaaacacattggctatttttagctatctattttttcatggatagaatctaaaatgtcaattag 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33695575 ttaaaaaattatcaacgaaaaagaatatgaaatgctgcaaacacattggctatttttagctatctattttttcatggatagaatctaaaatgtcaattag 33695674  T
Q  150 gctaagaaaaattattgtttgcttgattatccattgtctttatggctagccaataacaatattatgcaaaactccttcgatgttttgattccccatatct 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  33695675 gctaagaaaaattattgtttgcttgattatccattgtctttatggttagccaataacaatattatgcaaaactccttcgatgttttgattcctcagatct 33695774  T
Q  250 ttagagtatc 259  Q
    ||||||||||    
T  33695775 ttagagtatc 33695784  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 22567150 - 22567185
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcctt 51  Q
    |||||||| |||||||||||||||||||||||||||    
T  22567150 gcctaattgcaaggactaatcacatcattaagcctt 22567185  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 27934564 - 27934530
Alignment:
Q  17 cctaattccaaggactaatcacatcattaagcctt 51  Q
    ||||||| |||||||||||||||||||||||||||    
T  27934564 cctaattgcaaggactaatcacatcattaagcctt 27934530  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 4983090 - 4983123
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcc 49  Q
    |||||||| |||||||||||||||||||||||||    
T  4983090 gcctaattgcaaggactaatcacatcattaagcc 4983123  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 9400551 - 9400519
Alignment:
Q  17 cctaattccaaggactaatcacatcattaagcc 49  Q
    ||||||| |||||||||||||||||||||||||    
T  9400551 cctaattgcaaggactaatcacatcattaagcc 9400519  T

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Target: scaffold0205 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 21042 - 21007
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcctt 51  Q
    |||||||| |||||||||||||||||||||||||||    
T  21042 gcctaattgcaaggactaatcacatcattaagcctt 21007  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 14196648 - 14196613
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcctt 51  Q
    |||||||| |||||||||||||||||||||||||||    
T  14196648 gcctaattgcaaggactaatcacatcattaagcctt 14196613  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 14196979 - 14197011
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagc 48  Q
    |||||||| ||||||||||||||||||||||||    
T  14196979 gcctaattgcaaggactaatcacatcattaagc 14197011  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 6758229 - 6758264
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcctt 51  Q
    |||||||| |||||||||||||||||||||||||||    
T  6758229 gcctaattgcaaggactaatcacatcattaagcctt 6758264  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 41930547 - 41930514
Alignment:
Q  18 ctaattccaaggactaatcacatcattaagcctt 51  Q
    |||||| |||||||||||||||||||||||||||    
T  41930547 ctaattgcaaggactaatcacatcattaagcctt 41930514  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 28011732 - 28011767
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcctt 51  Q
    |||||||| |||||||||||||||||||||||||||    
T  28011732 gcctaattgcaaggactaatcacatcattaagcctt 28011767  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 24905200 - 24905166
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcct 50  Q
    |||||||| ||||||||||||||||||||||||||    
T  24905200 gcctaattgcaaggactaatcacatcattaagcct 24905166  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 11674728 - 11674694
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcct 50  Q
    |||||||| ||||||||||||||||||||||||||    
T  11674728 gcctaattgcaaggactaatcacatcattaagcct 11674694  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 11675058 - 11675092
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcct 50  Q
    |||||||| ||||||||||||||||||||||||||    
T  11675058 gcctaattgcaaggactaatcacatcattaagcct 11675092  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 23505085 - 23505051
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcct 50  Q
    |||||||| ||||||||||||||||||||||||||    
T  23505085 gcctaattgcaaggactaatcacatcattaagcct 23505051  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 23507820 - 23507854
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcct 50  Q
    |||||||| ||||||||||||||||||||||||||    
T  23507820 gcctaattgcaaggactaatcacatcattaagcct 23507854  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 32680628 - 32680594
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcct 50  Q
    |||||||| ||||||||||||||||||||||||||    
T  32680628 gcctaattgcaaggactaatcacatcattaagcct 32680594  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 32680959 - 32680993
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcct 50  Q
    |||||||| ||||||||||||||||||||||||||    
T  32680959 gcctaattgcaaggactaatcacatcattaagcct 32680993  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 36314331 - 36314297
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcct 50  Q
    |||||||| ||||||||||||||||||||||||||    
T  36314331 gcctaattgcaaggactaatcacatcattaagcct 36314297  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 48322741 - 48322775
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcct 50  Q
    |||||||| ||||||||||||||||||||||||||    
T  48322741 gcctaattgcaaggactaatcacatcattaagcct 48322775  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 36314662 - 36314695
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcc 49  Q
    |||||||| |||||||||||||||||||||||||    
T  36314662 gcctaattgcaaggactaatcacatcattaagcc 36314695  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 48322408 - 48322376
Alignment:
Q  18 ctaattccaaggactaatcacatcattaagcct 50  Q
    |||||| ||||||||||||||||||||||||||    
T  48322408 ctaattgcaaggactaatcacatcattaagcct 48322376  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 14900529 - 14900495
Alignment:
Q  16 gcctaattccaaggactaatcacatcattaagcct 50  Q
    |||||||| ||||||||||||||||||||||||||    
T  14900529 gcctaattgcaaggactaatcacatcattaagcct 14900495  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 14900846 - 14900880
Alignment:
Q  17 cctaattccaaggactaatcacatcattaagcctt 51  Q
    ||||||| |||||||||||||||||||||||||||    
T  14900846 cctaattgcaaggactaatcacatcattaagcctt 14900880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 6334884 - 6334921
Alignment:
Q  128 tagaatctaaaatgtcaattaggctaagaaaaattatt 165  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  6334884 tagaagctaaaatgtcaattaagctaagaaaaattatt 6334921  T

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