View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4412_low_13 (Length: 268)
Name: NF4412_low_13
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4412_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 33789763 - 33790030
Alignment:
| Q |
1 |
accaggtgcgacaccgacacctcagcaccataaataacatgagaaaatagaataacggaatataaccacatgtgtcggtctcgtgttggtgtccaacact |
100 |
Q |
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| T |
33789763 |
accaggtgcaacaccgacacctcagcaccataaataacatgagaaaatagaatagcggaatataaccacatgtgtcggtctcgtgttggtgtccaacact |
33789862 |
T |
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| Q |
101 |
gacacgtcttggacaccagacatgacttaaatgtgaattgttgatgctacatagattgcaaccatcattcatgaaagaagagtgatgttcatggtgaata |
200 |
Q |
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| T |
33789863 |
gacacatcttggacaccagacatgacttaaatgtgaattgtcgatgctacatagattgcaaccatcgttcatgaaagaagagtgatgttcatggtgaata |
33789962 |
T |
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| Q |
201 |
ctttagtttgtctaatggataataacccaggtctactttgcatactggacagtgatttagcctctcat |
268 |
Q |
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| T |
33789963 |
ctttagtttgtctaatggataataacccaggtctactttgcatactggacagtgatttagcctctcat |
33790030 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 31572677 - 31572614
Alignment:
| Q |
59 |
aatataaccacatgtgtcggtctcgtgttggtgtccaacactgacacgtcttggacaccagaca |
122 |
Q |
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| T |
31572677 |
aatataatcacatgtgtcggtgttgtgttggtgtcaaacacttacacgtgttagacatcagaca |
31572614 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 32908379 - 32908476
Alignment:
| Q |
40 |
tgagaaaatagaataacggaatataaccacatgtgtcggtctcgtgttggtgtccaacactgacacgtcttggacaccagacatgacttaaatgtgaa |
137 |
Q |
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| T |
32908379 |
tgagaaaatagaataattgaatgtaaccacgtgtgtcggtgtcatgttggtatcagacacagacacatgttggacataggacatgacttcaatctgaa |
32908476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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