View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4412_low_15 (Length: 259)
Name: NF4412_low_15
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4412_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 40197861 - 40198083
Alignment:
| Q |
22 |
ccgccaacaggttcttatcacaatttctgattcttcatctcgttattcattgatgattaatttataaataaaatcatga----atgaatgaattgattga |
117 |
Q |
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| T |
40197861 |
ccgccaacaggttcttatcacaatttctgattcttcatctcgttattcattgatgattaatttataaataaaatcatgaatgaatgaatgaattgattga |
40197960 |
T |
|
| Q |
118 |
tgcagctgctatgcttggaggaaagtgcagaatcattacgccttagaagctgcaagttctacaaaggatgccgaaaatacacgtacctagcgttttcctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40197961 |
tgcagctgctatgcttggaggaaagtgcagaatcattacgccttagaagctgcaagttctacaaaggatgccgaaaatacacgtacctaacgttttcctt |
40198060 |
T |
|
| Q |
218 |
cattaatcatttcaatttcccac |
240 |
Q |
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| T |
40198061 |
cattaatcatttcaatttcccac |
40198083 |
T |
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