View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4412_low_16 (Length: 248)
Name: NF4412_low_16
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4412_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 5829340 - 5829571
Alignment:
| Q |
1 |
tattgcgttagcacctgcacctgcacctatttctgagatttcagaggacaacgtgcccccacaaaaacaacccctctgtgaggatagtcccttgcaattg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5829340 |
tattgcgttagcacctgcagctgcacctatttctgagatttcagaggacaacgtgcccccacaaaaacaacccctctgtgaggatagtcctttgcaattg |
5829439 |
T |
|
| Q |
101 |
aatgtcaccgcatgtggtcaaactccgtgaaagaagattgaataatggagaggatctcaatcatattggcatgtaataatcaagattgaaatagtttgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5829440 |
aatgtcaccgcatgtggtcaaactccgtgaaagaagattgaataatggagaggatctcaatcatgttggcatgtaataatcaagattgaaatagtttgtg |
5829539 |
T |
|
| Q |
201 |
cttggtattgtttcatttttatgttatgtaat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5829540 |
cttggtattgtttcatttttatgttatgtaat |
5829571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University