View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4412_low_2 (Length: 554)

Name: NF4412_low_2
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4412_low_2
NF4412_low_2
[»] chr6 (19 HSPs)
chr6 (241-437)||(2986761-2986957)
chr6 (35-235)||(2987015-2987228)
chr6 (241-437)||(2928127-2928318)
chr6 (241-406)||(2935663-2935828)
chr6 (276-433)||(2952983-2953140)
chr6 (35-235)||(2985959-2986155)
chr6 (439-539)||(3002848-3002960)
chr6 (479-539)||(2954967-2955027)
chr6 (479-539)||(2986612-2986672)
chr6 (479-536)||(2952838-2952895)
chr6 (479-533)||(2974890-2974944)
chr6 (329-378)||(2955324-2955373)
chr6 (361-433)||(2955220-2955292)
chr6 (479-520)||(2935508-2935549)
chr6 (483-536)||(2965404-2965457)
chr6 (395-440)||(3002775-3002820)
chr6 (479-539)||(2927989-2928051)
chr6 (271-373)||(2985775-2985878)
chr6 (481-518)||(2983761-2983798)
[»] scaffold0024 (5 HSPs)
scaffold0024 (243-440)||(43204-43401)
scaffold0024 (332-433)||(33991-34092)
scaffold0024 (479-536)||(34180-34237)
scaffold0024 (148-235)||(33739-33829)
scaffold0024 (186-235)||(43082-43131)
[»] chr7 (3 HSPs)
chr7 (241-407)||(3340056-3340223)
chr7 (479-539)||(3339881-3339941)
chr7 (135-169)||(3340362-3340396)
[»] chr8 (1 HSPs)
chr8 (244-274)||(7473110-7473140)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 241 - 437
Target Start/End: Complemental strand, 2986957 - 2986761
Alignment:
241 taatcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactca 340  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| ||   | |||||||| |||    
2986957 taataaatttaccatttactcaagtgttgcactctcttattttatcgatgttcctcttctttttcaattatataaactaaatttcgtcaattcacattca 2986858  T
341 aaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaactca 437  Q
    ||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||    
2986857 aaaataattttgatttaaattatccaaacaacttgaataatgataaatcacttttcaattaaggtatcaaaacataaatcatgttacattaaactca 2986761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 35 - 235
Target Start/End: Complemental strand, 2987228 - 2987015
Alignment:
35 tttaagtaaaatggagagtgagagcataaatgtagggatatatgataaaaa-----taattaatgtggtgcttttttggttgtga-------gttggaag 122  Q
    |||||||||||||||| ||||||||||||||||| ||||||||| ||||||     |||||||||| ||||||||||||||||||       ||||||||    
2987228 tttaagtaaaatggagggtgagagcataaatgtaaggatatatggtaaaaaaataataattaatgtcgtgcttttttggttgtgacttgtgagttggaag 2987129  T
123 acatgcgacgtaagttcacaagatcaaacgtgagttatgtactaaatcaacttgtc-gtggaaactctaaataattttaagtgattgttgttcgaaaatc 221  Q
    |||   ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||| ||| ||    
2987128 acacttgacgtaagttcacaagatcaaacgtgagttatgtactaaatcaacttgtcaatggaaactgttaataattttaagtgattgttgttccaaattc 2987029  T
222 gattcaaggttgga 235  Q
    ||||||||||||||    
2987028 gattcaaggttgga 2987015  T

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Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 241 - 437
Target Start/End: Complemental strand, 2928318 - 2928127
Alignment:
241 taatcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactca 340  Q
    ||||||||||||||||||||||||     |||||||||||||| |  | || |||||||||||| ||||||| |||| | |||   | ||||||||||||    
2928318 taatcaatttaccatttactcaag-----cactctcttattttattaacgtgcctcttcttttttaatcattcaaaccagttttggtaaattcacactca 2928224  T
341 aaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaactca 437  Q
    |||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| ||| ||||| |||| |||  |||||||||    
2928223 aaagtaattttgatctaaattatctaaacaacttgaattatgaaaaatcacttttcaatcaaggtatcaaaacataagtcaccttaacttaaactca 2928127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 241 - 406
Target Start/End: Complemental strand, 2935828 - 2935663
Alignment:
241 taatcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactca 340  Q
    |||||||||||||||||| ||||||||| || | ||||||||| | || ||||||||||||||| ||||||| ||||   |||  || |||||||| |||    
2935828 taatcaatttaccatttagtcaagtgtttcattgtcttattttattgacgttcctcttcttttttaatcattcaaacgcgttttgataaattcacattca 2935729  T
341 aaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggta 406  Q
    |||  ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||    
2935728 aaaacaattttgatctaaattatccaaacaacatgaattatgaaaaatcacttttcaatcaaggta 2935663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 276 - 433
Target Start/End: Complemental strand, 2953140 - 2952983
Alignment:
276 cttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactcaaaagtaatttggatctaaattatccaaacaacttg 375  Q
    |||||||| | |||||||||||||||||| ||||||| |||||| |||  || ||||||| || ||||||||||| |||||||||| |||||||||||||    
2953140 cttattttatggatgttcctcttcttttttaatcattcaaactagttttgataaattcactcttaaaagtaattttgatctaaattctccaaacaacttg 2953041  T
376 aataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaa 433  Q
    ||| |||||||||||||||||||| ||| |||  || ||||||||| | |||||||||    
2953040 aattatgaaaaatcacttttcaatcaagatatccaaacataaatcatgatacattaaa 2952983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 35 - 235
Target Start/End: Complemental strand, 2986155 - 2985959
Alignment:
35 tttaagtaaaatgga-gagtgagagcataaatgtagggatatatgataaaaataattaatgtggtgcttttttggttgtgagttggaagacatgcgacgt 133  Q
    ||||||||||||||| ||||||||  |||||||||||| ||||||| |||||  ||    || |||||| ||||||||||||||||||| ||   |||||    
2986155 tttaagtaaaatggaagagtgagactataaatgtaggggtatatgaaaaaaaagat----gtcgtgcttgtttggttgtgagttggaaggcacttgacgt 2986060  T
134 aagttcacaagatcaaacgtgagttatgtactaaatcaacttgtcgtggaaactctaaataattttaagtgattgttgttcgaaaatcgattcaaggttg 233  Q
    ||||||| | | ||||||| ||||||||| ||||||||| ||||  |||  ||||||| |||||||| ||||||||||||| ||| | |||| |||||||    
2986059 aagttcatagggtcaaacgagagttatgttctaaatcaaattgt-ttggggactctaactaattttatgtgattgttgttccaaactggatttaaggttg 2985961  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 439 - 539
Target Start/End: Original strand, 3002848 - 3002960
Alignment:
439 ttcattcaaaaacaattattatcaccgtggaaccaaacacac------------attagtttggagtttctacctgcacccctagattttgccatccaca 526  Q
    ||||||||||||||||| |||||||||||||||||||| |||            ||||||||| |||||||||||||||||||||||||||||| |||||    
3002848 ttcattcaaaaacaattgttatcaccgtggaaccaaacgcacgcgagacacgacattagtttgaagtttctacctgcacccctagattttgccaaccaca 3002947  T
527 ctatcagacccat 539  Q
    |||||||||||||    
3002948 ctatcagacccat 3002960  T

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Target: chr6; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 2955027 - 2954967
Alignment:
479 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacccat 539  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||    
2955027 acattagttaggagtttctacctgcaaccctagattttgccaaccacactatcagacccat 2954967  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 2986672 - 2986612
Alignment:
479 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacccat 539  Q
    ||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||||    
2986672 acattagttaggagtttctagttgcacccctagattttgccaaccacactatcagacccat 2986612  T

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Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 536
Target Start/End: Complemental strand, 2952895 - 2952838
Alignment:
479 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacc 536  Q
    ||||||||| ||| |||||||||||||||||||||||||||| | |||||||||||||    
2952895 acattagttaggaatttctacctgcacccctagattttgccaacaacactatcagacc 2952838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 479 - 533
Target Start/End: Complemental strand, 2974944 - 2974890
Alignment:
479 acattagtttggagtttctacctgcacccctagattttgccatccacactatcag 533  Q
    ||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||    
2974944 acattagttaggagtttctacctgcacccctagatttttccaacaacactatcag 2974890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 2955373 - 2955324
Alignment:
329 aattcacactcaaaagtaatttggatctaaattatccaaacaacttgaat 378  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||||||||    
2955373 aattcacattcagaagtaattttgatctaaattatccaaacaacttgaat 2955324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 433
Target Start/End: Complemental strand, 2955292 - 2955220
Alignment:
361 tatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaa 433  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||||   | ||||||| | |||||||||||    
2955292 tatccaaaacacttgaattatgaaaaatcacttttcaattaaggtatcctaacataaattatgttacattaaa 2955220  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 520
Target Start/End: Complemental strand, 2935549 - 2935508
Alignment:
479 acattagtttggagtttctacctgcacccctagattttgcca 520  Q
    |||||||||  |||||||||||||||||||||||||||||||    
2935549 acattagttatgagtttctacctgcacccctagattttgcca 2935508  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 536
Target Start/End: Complemental strand, 2965457 - 2965404
Alignment:
483 tagtttggagtttctacctgcacccctagattttgccatccacactatcagacc 536  Q
    ||||| |||||||||||||| | ||||||||||||||| | |||||||||||||    
2965457 tagttaggagtttctacctgaaaccctagattttgccaacaacactatcagacc 2965404  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 3002775 - 3002820
Alignment:
395 tcaattaaggtattaaatcataaatcacgttacattaaactcattt 440  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||    
3002775 tcaattaaggtattaaaacataaatcatgttacactaaactcattt 3002820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 2928051 - 2927989
Alignment:
479 acattagtttggagtttctacctgcacccctaga--ttttgccatccacactatcagacccat 539  Q
    ||||||||  |||||||||||||||||||| |||  |||||||| |||| |||||||||||||    
2928051 acattagtcaggagtttctacctgcaccccaagattttttgccaaccacgctatcagacccat 2927989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 373
Target Start/End: Complemental strand, 2985878 - 2985775
Alignment:
271 actctcttattttgtcgatgttcctcttct-ttttcaatcatttaaactaatttgtattaattcacactcaaaagtaatttggatctaaattatccaaac 369  Q
    ||||||||||||  | |||| ||||||||| |||| ||||||| |||||| |||   | ||| ||||||||| |||||||| ||| ||||||| ||||||    
2985878 actctcttatttgattgatgctcctcttctttttttaatcattcaaactagttttggtaaatgcacactcaagagtaatttcgatttaaattacccaaac 2985779  T
370 aact 373  Q
    ||||    
2985778 aact 2985775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 518
Target Start/End: Complemental strand, 2983798 - 2983761
Alignment:
481 attagtttggagtttctacctgcacccctagattttgc 518  Q
    ||||||| ||||||| ||||||||||||||||||||||    
2983798 attagttaggagtttttacctgcacccctagattttgc 2983761  T

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Target: scaffold0024 (Bit Score: 106; Significance: 9e-53; HSPs: 5)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 243 - 440
Target Start/End: Original strand, 43204 - 43401
Alignment:
243 atcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactcaaa 342  Q
    ||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| |||||| |||  || |||||||||| |||    
43204 atcaattcaccatttactcaagtgttgcagtctcttattttattgatgttcctcttctttttcaatcattcaaactagttttgataaattcacacttaaa 43303  T
343 agtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaactcattt 440  Q
    ||| |||| |||| |||||||||||||||||||||| ||||||||||| |||||||| ||| |||| || |||||||||  ||| |||||| ||||||    
43304 agtcatttcgatcaaaattatccaaacaacttgaattatgaaaaatcatttttcaatcaagatattcaaacataaatcatattatattaaagtcattt 43401  T

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Target: scaffold0024; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 332 - 433
Target Start/End: Original strand, 33991 - 34092
Alignment:
332 tcacactcaaaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacatta 431  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| |||  ||  |||||||| |||||||||    
33991 tcacactcaaaagtaattttgatctaaattatccaaataacttgaattatgaaaaatcacttttcaatcaagctatccaaatataaatcatgttacatta 34090  T
432 aa 433  Q
    ||    
34091 aa 34092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 536
Target Start/End: Original strand, 34180 - 34237
Alignment:
479 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacc 536  Q
    |||||| || ||||||||||| ||||||| |||||||||||| | |||||||||||||    
34180 acattacttaggagtttctacttgcacccgtagattttgccaacaacactatcagacc 34237  T

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Target: scaffold0024; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 33739 - 33829
Alignment:
148 aaacgtgagttatgtact----aaatcaacttgtcgtggaaactctaaataattttaagtgattgttgttcgaaaatcgattcaaggttgga 235  Q
    ||||||||||||||||||    ||||||||||||  ||||  ||||  || |||||| ||||||||||||| |||||||||| |||||||||    
33739 aaacgtgagttatgtacttaataaatcaacttgtt-tggatgctctttatcattttacgtgattgttgttccaaaatcgatttaaggttgga 33829  T

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Target: scaffold0024; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 43082 - 43131
Alignment:
186 ctctaaataattttaagtgattgttgttcgaaaatcgattcaaggttgga 235  Q
    |||| |||||||||| ||||||||||||| |||||| ||| |||||||||    
43082 ctcttaataattttatgtgattgttgttccaaaatcaatttaaggttgga 43131  T

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Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 3340223 - 3340056
Alignment:
241 taatcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttc-aatcatttaaactaatttgtattaattcacactc 339  Q
    ||||||||||| |||||| |||||||||||||||||||||||| | || |||||| ||||||||  ||||||| |||| | |||  || |||||||||||    
3340223 taatcaatttatcatttagtcaagtgttgcactctcttattttattgacgttccttttctttttttaatcattaaaaccagttttgataaattcacactc 3340124  T
340 aaaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtat 407  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||| | |||||||||| |||||||    
3340123 aaaagtaattttaatctaaattatccaaacaacttgaattatgaaaatttacttttcaatcaaggtat 3340056  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 3339941 - 3339881
Alignment:
479 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacccat 539  Q
    ||||||||| ||||||||||| |||||||||||||||||||| ||| | ||||||||||||    
3339941 acattagttaggagtttctacatgcacccctagattttgccaaccatattatcagacccat 3339881  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 3340396 - 3340362
Alignment:
135 agttcacaagatcaaacgtgagttatgtactaaat 169  Q
    |||||||| ||||||||||||||||||||||||||    
3340396 agttcacatgatcaaacgtgagttatgtactaaat 3340362  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 274
Target Start/End: Complemental strand, 7473140 - 7473110
Alignment:
244 tcaatttaccatttactcaagtgttgcactc 274  Q
    |||||||||||||||||||||||||||||||    
7473140 tcaatttaccatttactcaagtgttgcactc 7473110  T

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