View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4412_low_21 (Length: 239)
Name: NF4412_low_21
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4412_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 6411240 - 6411034
Alignment:
| Q |
16 |
gataggatatattgtgatgaccaagcaagacttagacgaggttctgattgagttctaagttctaactactgccacaacaggatttgtacagcaggtagca |
115 |
Q |
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| T |
6411240 |
gatatgatatattgtgatgaccaagcaagacttagacgaggttctgattgagttctaagttctaaccactgccacaacaggatttgtgcagcaggtagca |
6411141 |
T |
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| Q |
116 |
gatacgctaacaaacatagtattgagttagtaaacatctaaatacatattccaatcttagaaaaccaaaccactcaccatctaatgcaatgcatgattgt |
215 |
Q |
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| T |
6411140 |
gatacgctaacaaacataatattgagttagtaaacatctaaatacatattccaatcttagaaaaccaaaccactcaccatctaatgcaatgcatgattgt |
6411041 |
T |
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| Q |
216 |
aggttgt |
222 |
Q |
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||||||| |
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| T |
6411040 |
aggttgt |
6411034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 213
Target Start/End: Original strand, 4967698 - 4967824
Alignment:
| Q |
87 |
ccacaacaggatttgtacagcaggtagcagatacgctaacaaacatagtattgagttagtaaacatctaaatacatattccaatcttagaaaaccaaacc |
186 |
Q |
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| T |
4967698 |
ccacaacaagatttgcgcagcaggtagcagatatgctaacaaacatactattgactgggtatacatctgaatacttattccaatcttagaaaaccaatcc |
4967797 |
T |
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| Q |
187 |
actcaccatctaatgcaatgcatgatt |
213 |
Q |
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| T |
4967798 |
actaaccacctaatgcaaagtatgatt |
4967824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 9819270 - 9819374
Alignment:
| Q |
106 |
gcaggtagcagatacgctaacaaacatagtattgagttagtaaacatctaaatacatattccaatcttagaaaaccaaaccactcaccatctaatgcaat |
205 |
Q |
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| T |
9819270 |
gcagctagtagatatgctaaaaaacatactattgactaggcatacatcaaaatacttattccaatctcagaaaaccaaacaactaaccatctagcgcaat |
9819369 |
T |
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| Q |
206 |
gcatg |
210 |
Q |
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||||| |
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| T |
9819370 |
gcatg |
9819374 |
T |
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