View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4412_low_24 (Length: 233)
Name: NF4412_low_24
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4412_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 47197809 - 47198021
Alignment:
| Q |
1 |
gggtggagattatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactcccaacagtctcattgaaaggg |
100 |
Q |
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| T |
47197809 |
gggtggagagtatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactcccaacagtctcattgaaaggg |
47197908 |
T |
|
| Q |
101 |
gtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcagagctagtaaagtggctaa |
200 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47197909 |
gtttcgaggagaaagggaaagccgttcttacaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcagagctagtaaagtggctaa |
47198008 |
T |
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| Q |
201 |
tgaggttaagagt |
213 |
Q |
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||||||||||||| |
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| T |
47198009 |
tgaggttaagagt |
47198021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 47184927 - 47185138
Alignment:
| Q |
1 |
gggtggagattatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactcccaacagtctcattgaaaggg |
100 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47184927 |
gggtggagaatatcattggccggagcaatcattccagcagttatgcttacagtggggtctctcatagtggatgatactcccaacagtctcattgaaaggg |
47185026 |
T |
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| Q |
101 |
gtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcagagctagtaaagtggctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47185027 |
gtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcagagctagtaaagtggctaa |
47185126 |
T |
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| Q |
201 |
tgaggttaagag |
212 |
Q |
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|||||| ||||| |
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| T |
47185127 |
tgaggtcaagag |
47185138 |
T |
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