View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4412_low_3 (Length: 494)
Name: NF4412_low_3
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4412_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 477
Target Start/End: Complemental strand, 47248853 - 47248402
Alignment:
| Q |
17 |
cataggcgtaaacaatcatggtcattcgataatcttcataaaatttgcaaaagccaacacattgcactggcagttaaaaatcgtattacattataattgg |
116 |
Q |
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| T |
47248853 |
cataggcgtaaacaatcatggtcatgcgataatcttcataaaatttgcaaaagccaacacattgcactggcagttaaaaatcgtattacattataattgg |
47248754 |
T |
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| Q |
117 |
gttgcaaagaacctaagacatttgataattctcacattgggctaacctataaatattatcagattttcactataaatcgtaaaatattaagcatataaat |
216 |
Q |
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| T |
47248753 |
gttgcaaagaacctaagacatttgataattctcacattgggctagcctataaatattatcagattttcactataaatcgtaaaatattaagcatataaat |
47248654 |
T |
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| Q |
217 |
ctcctcacttatatatagctctcaacataannnnnnnnnatctccctcaacaaaaatttatctgatgggaaacacttcacacgctaacccatgaatatta |
316 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47248653 |
ttcctcacttatatatacctctcaacataa-ttttttttatctccctcaacaaaaaattatctgatgggaaacacttcacacgctaacccatgaatatta |
47248555 |
T |
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| Q |
317 |
tttgttgaatccatgtgatgagatgacttagggggtctagataagaacatagtcacatagagattaaagtaataaaaatgtcactagttcaacttccctc |
416 |
Q |
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|||| |||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47248554 |
tttgctgaatccatgtgataagatgacttaggtggtctagataaga--------acatagagattaaagtaataaaaatgtcactagttcaacttccctc |
47248463 |
T |
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| Q |
417 |
cttcactaacaaaataataactaacaagtgcaacatttgccatttaaaagatactagtatt |
477 |
Q |
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| T |
47248462 |
cttcactaacaaaataataactaacaagtgcaacatttgccatttaaaagatactagtatt |
47248402 |
T |
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