View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4412_low_4 (Length: 494)

Name: NF4412_low_4
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4412_low_4
NF4412_low_4
[»] chr7 (51 HSPs)
chr7 (4-316)||(388787-389085)
chr7 (1-224)||(15434040-15434261)
chr7 (1-224)||(48505915-48506136)
chr7 (1-224)||(3930843-3931064)
chr7 (1-224)||(43052678-43052890)
chr7 (1-224)||(5795063-5795275)
chr7 (25-224)||(37334099-37334296)
chr7 (37-223)||(26216106-26216289)
chr7 (1-224)||(42071889-42072101)
chr7 (1-224)||(36926796-36927017)
chr7 (216-316)||(5776136-5776236)
chr7 (216-324)||(3930714-3930822)
chr7 (216-318)||(665851-665953)
chr7 (216-318)||(5794940-5795042)
chr7 (216-313)||(37334317-37334414)
chr7 (220-316)||(43052915-43053011)
chr7 (219-318)||(36927041-36927140)
chr7 (219-323)||(28949757-28949861)
chr7 (216-318)||(42072122-42072224)
chr7 (216-313)||(45176284-45176381)
chr7 (1-107)||(45174986-45175092)
chr7 (216-318)||(26216311-26216406)
chr7 (1-109)||(7444186-7444294)
chr7 (216-318)||(48505799-48505894)
chr7 (161-224)||(5776257-5776320)
chr7 (161-224)||(28949885-28949948)
chr7 (163-224)||(665974-666035)
chr7 (1-54)||(28950018-28950071)
chr7 (216-323)||(33935547-33935654)
chr7 (165-224)||(45176204-45176263)
chr7 (219-313)||(20401038-20401132)
chr7 (236-308)||(46652647-46652719)
chr7 (216-318)||(222230-222332)
chr7 (216-318)||(44421905-44422007)
chr7 (239-318)||(18249997-18250076)
chr7 (165-224)||(20400955-20401014)
chr7 (284-318)||(15434312-15434346)
chr7 (216-249)||(15434282-15434315)
chr7 (219-316)||(45055770-45055867)
chr7 (239-324)||(46573610-46573695)
chr7 (165-225)||(3942135-3942195)
chr7 (216-324)||(23226997-23227105)
chr7 (216-324)||(23236150-23236258)
chr7 (168-224)||(44422029-44422085)
chr7 (219-318)||(11595800-11595899)
chr7 (178-224)||(222353-222399)
chr7 (216-318)||(22075102-22075204)
chr7 (216-318)||(33124734-33124836)
chr7 (282-324)||(33171532-33171574)
chr7 (179-224)||(30919395-30919440)
chr7 (239-324)||(33898942-33899027)
[»] chr1 (45 HSPs)
chr1 (3-276)||(35309406-35309664)
chr1 (1-224)||(47602989-47603210)
chr1 (4-224)||(36418896-36419114)
chr1 (1-224)||(37441313-37441534)
chr1 (53-224)||(24469944-24470113)
chr1 (216-318)||(24469821-24469923)
chr1 (216-318)||(7702869-7702971)
chr1 (216-318)||(47602866-47602968)
chr1 (216-323)||(32179892-32179999)
chr1 (220-324)||(36419139-36419243)
chr1 (216-318)||(37441190-37441292)
chr1 (104-224)||(32179752-32179871)
chr1 (216-318)||(25124889-25124991)
chr1 (216-318)||(35810752-35810854)
chr1 (216-313)||(7596427-7596524)
chr1 (239-318)||(24575966-24576045)
chr1 (216-318)||(12224579-12224681)
chr1 (216-318)||(14578589-14578691)
chr1 (220-318)||(15306531-15306629)
chr1 (239-313)||(47983312-47983386)
chr1 (219-323)||(7016074-7016178)
chr1 (216-316)||(15014349-15014449)
chr1 (239-315)||(28006407-28006483)
chr1 (216-316)||(42916120-42916220)
chr1 (165-225)||(46265070-46265130)
chr1 (236-313)||(7996025-7996102)
chr1 (244-313)||(20349208-20349277)
chr1 (236-325)||(38061175-38061264)
chr1 (165-225)||(7596347-7596407)
chr1 (165-225)||(23916764-23916824)
chr1 (165-225)||(25125011-25125071)
chr1 (165-225)||(42916240-42916300)
chr1 (165-225)||(42937028-42937088)
chr1 (216-316)||(46264950-46265050)
chr1 (239-318)||(6413296-6413375)
chr1 (165-224)||(7702789-7702848)
chr1 (239-318)||(7841680-7841758)
chr1 (220-318)||(45581012-45581110)
chr1 (219-313)||(19508565-19508659)
chr1 (239-319)||(14796645-14796725)
chr1 (239-319)||(14805519-14805599)
chr1 (282-318)||(29677523-29677559)
chr1 (165-225)||(35810672-35810732)
chr1 (165-225)||(40002848-40002908)
chr1 (222-318)||(50447381-50447477)
[»] scaffold0316 (2 HSPs)
scaffold0316 (1-224)||(19088-19309)
scaffold0316 (216-323)||(19330-19437)
[»] chr4 (49 HSPs)
chr4 (3-224)||(49820778-49820995)
chr4 (1-224)||(53369480-53369701)
chr4 (1-224)||(12789679-12789900)
chr4 (1-224)||(44791370-44791582)
chr4 (1-224)||(45674636-45674848)
chr4 (216-324)||(53369906-53370014)
chr4 (77-224)||(19852846-19852991)
chr4 (216-318)||(45674869-45674971)
chr4 (69-224)||(48977436-48977589)
chr4 (216-318)||(50606042-50606144)
chr4 (216-313)||(21441615-21441712)
chr4 (1-92)||(19850521-19850612)
chr4 (216-318)||(12789556-12789658)
chr4 (216-318)||(19853012-19853114)
chr4 (216-323)||(48977610-48977717)
chr4 (89-224)||(53369752-53369885)
chr4 (216-309)||(44791256-44791349)
chr4 (25-224)||(50605841-50606021)
chr4 (165-224)||(21441535-21441594)
chr4 (216-275)||(49821016-49821075)
chr4 (34-109)||(49378093-49378168)
chr4 (216-326)||(22184537-22184647)
chr4 (216-325)||(9469811-9469920)
chr4 (219-316)||(51995115-51995212)
chr4 (216-313)||(49083243-49083340)
chr4 (239-322)||(12673028-12673111)
chr4 (232-318)||(28265677-28265763)
chr4 (216-314)||(50146926-50147024)
chr4 (216-313)||(36156303-36156400)
chr4 (216-324)||(56224179-56224287)
chr4 (239-318)||(80554-80633)
chr4 (216-315)||(26632970-26633069)
chr4 (239-318)||(48731177-48731256)
chr4 (219-324)||(52706254-52706359)
chr4 (165-224)||(9469731-9469790)
chr4 (239-318)||(36543838-36543917)
chr4 (216-259)||(52813635-52813678)
chr4 (232-318)||(24007907-24007993)
chr4 (239-317)||(40797887-40797965)
chr4 (178-224)||(43798350-43798396)
chr4 (1-35)||(48977400-48977434)
chr4 (232-318)||(55891989-55892075)
chr4 (179-224)||(22721296-22721341)
chr4 (179-224)||(24008030-24008075)
chr4 (218-259)||(38791728-38791769)
chr4 (176-225)||(48339225-48339274)
chr4 (168-224)||(43387225-43387281)
chr4 (165-225)||(43812183-43812243)
chr4 (168-224)||(52813558-52813614)
[»] chr6 (17 HSPs)
chr6 (1-318)||(8200434-8200767)
chr6 (1-224)||(10346513-10346734)
chr6 (216-318)||(10346755-10346857)
chr6 (1-103)||(7957434-7957536)
chr6 (216-318)||(5640256-5640358)
chr6 (239-318)||(10961800-10961879)
chr6 (165-225)||(9950886-9950946)
chr6 (165-225)||(10961922-10961982)
chr6 (161-224)||(4441428-4441491)
chr6 (182-225)||(5640378-5640421)
chr6 (231-318)||(33110507-33110594)
chr6 (179-224)||(3081845-3081890)
chr6 (179-224)||(7437272-7437317)
chr6 (239-316)||(11460020-11460097)
chr6 (282-318)||(13312124-13312160)
chr6 (216-316)||(17441192-17441292)
chr6 (165-225)||(27985016-27985076)
[»] chr2 (32 HSPs)
chr2 (1-224)||(41958935-41959156)
chr2 (1-224)||(36538448-36538669)
chr2 (1-224)||(34064506-34064718)
chr2 (25-224)||(33831252-33831440)
chr2 (216-318)||(27634705-27634807)
chr2 (216-324)||(33831529-33831637)
chr2 (1-104)||(26436167-26436270)
chr2 (216-312)||(33163990-33164086)
chr2 (216-318)||(36538690-36538792)
chr2 (216-318)||(41959177-41959279)
chr2 (1-109)||(27633532-27633640)
chr2 (216-315)||(26436388-26436486)
chr2 (216-310)||(34064739-34064833)
chr2 (161-224)||(26436304-26436367)
chr2 (174-224)||(33831458-33831508)
chr2 (175-224)||(27634635-27634684)
chr2 (216-318)||(3409192-3409294)
chr2 (239-318)||(27464576-27464655)
chr2 (219-318)||(44740487-44740586)
chr2 (216-318)||(30713190-30713292)
chr2 (216-319)||(24844669-24844772)
chr2 (165-225)||(34116299-34116359)
chr2 (165-225)||(39690124-39690184)
chr2 (176-225)||(11027873-11027922)
chr2 (239-316)||(41332288-41332365)
chr2 (222-318)||(11027948-11028044)
chr2 (1-51)||(20986456-20986506)
chr2 (176-225)||(27902564-27902613)
chr2 (179-224)||(29806885-29806930)
chr2 (219-316)||(34116179-34116276)
chr2 (179-224)||(40458889-40458934)
chr2 (219-259)||(2647037-2647077)
[»] chr3 (27 HSPs)
chr3 (1-224)||(41609679-41609901)
chr3 (3-224)||(32688972-32689182)
chr3 (1-224)||(23206434-23206656)
chr3 (216-318)||(23206312-23206414)
chr3 (216-318)||(32689203-32689305)
chr3 (216-316)||(41609922-41610021)
chr3 (216-316)||(39942806-39942906)
chr3 (165-322)||(45714679-45714836)
chr3 (221-318)||(19560778-19560875)
chr3 (1-109)||(39134152-39134260)
chr3 (219-318)||(25253739-25253838)
chr3 (216-318)||(54393447-54393549)
chr3 (241-318)||(26049544-26049621)
chr3 (239-318)||(12710759-12710838)
chr3 (216-323)||(52199463-52199570)
chr3 (165-224)||(44574480-44574539)
chr3 (216-318)||(33438735-33438837)
chr3 (221-318)||(44574565-44574662)
chr3 (216-312)||(39469541-39469637)
chr3 (239-313)||(20550211-20550285)
chr3 (178-224)||(33896797-33896843)
chr3 (216-318)||(46293217-46293319)
chr3 (168-220)||(28242540-28242592)
chr3 (216-316)||(28242617-28242717)
chr3 (168-224)||(52199346-52199402)
chr3 (165-225)||(54393569-54393629)
chr3 (282-318)||(54432181-54432217)
[»] chr5 (35 HSPs)
chr5 (1-224)||(18879986-18880205)
chr5 (1-214)||(22921842-22922053)
chr5 (1-224)||(27905889-27906111)
chr5 (1-148)||(29327825-29327973)
chr5 (216-318)||(27906132-27906234)
chr5 (216-318)||(18880226-18880328)
chr5 (216-323)||(29328078-29328184)
chr5 (219-318)||(15933200-15933299)
chr5 (383-471)||(18588975-18589065)
chr5 (216-318)||(38522865-38522967)
chr5 (216-318)||(3801368-3801470)
chr5 (1-103)||(3805058-3805160)
chr5 (216-318)||(31620902-31621004)
chr5 (162-208)||(29327991-29328037)
chr5 (222-318)||(20189013-20189109)
chr5 (165-225)||(20190710-20190770)
chr5 (240-324)||(34719655-34719739)
chr5 (219-318)||(14500710-14500809)
chr5 (175-225)||(20188937-20188987)
chr5 (236-318)||(27450585-27450667)
chr5 (219-313)||(31021900-31021994)
chr5 (216-313)||(19282123-19282220)
chr5 (216-316)||(1840693-1840793)
chr5 (236-324)||(26298365-26298453)
chr5 (224-312)||(39414224-39414312)
chr5 (245-324)||(17168441-17168520)
chr5 (161-224)||(19282241-19282304)
chr5 (219-318)||(26218084-26218183)
chr5 (165-224)||(31620822-31620881)
chr5 (236-318)||(26299901-26299983)
chr5 (245-323)||(28247473-28247551)
chr5 (236-318)||(39407460-39407542)
chr5 (179-224)||(10493953-10493998)
chr5 (219-316)||(20190591-20190687)
chr5 (239-323)||(32945020-32945104)
[»] chr8 (12 HSPs)
chr8 (25-224)||(11161397-11161585)
chr8 (8-224)||(453289-453496)
chr8 (216-318)||(453517-453619)
chr8 (216-316)||(11161606-11161706)
chr8 (219-314)||(43384831-43384926)
chr8 (221-325)||(9412521-9412625)
chr8 (239-318)||(33279981-33280060)
chr8 (216-312)||(27189092-27189188)
chr8 (165-225)||(34516092-34516152)
chr8 (219-318)||(34655072-34655171)
chr8 (189-225)||(10749345-10749381)
chr8 (282-318)||(39478150-39478186)
[»] scaffold0022 (1 HSPs)
scaffold0022 (217-316)||(124487-124586)
[»] scaffold0224 (2 HSPs)
scaffold0224 (216-316)||(7314-7414)
scaffold0224 (165-225)||(7434-7494)
[»] scaffold0171 (1 HSPs)
scaffold0171 (239-318)||(21144-21223)
[»] scaffold0260 (1 HSPs)
scaffold0260 (244-313)||(11531-11600)
[»] scaffold0204 (1 HSPs)
scaffold0204 (176-225)||(26747-26796)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 51)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 4 - 316
Target Start/End: Original strand, 388787 - 389085
Alignment:
Q  4 aacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgacattt 103  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||    
T  388787 aacaaaattcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctct-cccttcaagacaaaattgtattcagcgccattt 388885  T
Q  104 gccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaactat 203  Q
    |||||||||||||||||   |||||||||||||||||||||||||            |||||||||||| ||||||||||||||||||||||||||||||    
T  388886 gccacatttgaattaaatttttttaaaaactaactcaaattgatt--tatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactat 388983  T
Q  204 atgtagctcaagttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggtt 303  Q
    ||||||||||||||           ||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||| ||    
T  388984 atgtagctcaagtt-----------cagctcgttaggttcatgaaccaagttcaacggattaaatatcgagttgaatgtcgaactataatcgagttgatt 389072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15434040 - 15434261
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||    
T  15434040 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaactcccactgctcttcccttcaagacaaaattgtattcagccaca 15434139  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    ||||||||||||||||||| ||| |||||||||||||| |||||||||            |||||||||||| |||||||||||| ||||||||||||||    
T  15434140 tttgccacatttgaattaataaaatttaaaaactaactaaaattgatt--tatatatataatcgataatcgagccatctcatgaagctaacgagtcgaac 15434237  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    || |||||||||||||||||||||    
T  15434238 tagatgtagctcaagttcagctca 15434261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 48506136 - 48505915
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||    
T  48506136 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgttcttcccttcaagacaaaattgtattcagccaca 48506037  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    |||||||||||||||||||    |||||||||||||||||||||||||            ||| |||||||| |||||||||| ||||||||||||||||    
T  48506036 tttgccacatttgaattaattttttttaaaaactaactcaaattgatt--tatatatataatcaataatcgagccatctcatgtacctaacgagtcgaac 48505939  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||    
T  48505938 tatatgtagctcaagttcagctca 48505915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 3931064 - 3930843
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||| |||    
T  3931064 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactagtcttcccttcaagacaaaattgtattcagccaca 3930965  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    |||||||||||||||||||    |||||||||||||||||||||||||            ||| |||||||| |||||||||| ||||||||||| ||||    
T  3930964 tttgccacatttgaattaattttttttaaaaactaactcaaattgatt--tatatatataatcaataatcgagccatctcatgtacctaacgagttgaac 3930867  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||    
T  3930866 tatatgtagctcaagttcagctca 3930843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43052678 - 43052890
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||          
T  43052678 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattca------ 43052771  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
       |||||||||||||||||||| ||||||||||||||||||||||||            ||||||||||||  ||||||||||| ||||||||||||||    
T  43052772 ---gccacatttgaattaaaaaaatttaaaaactaactcaaattgatt--tatatatataatcgataatcgagtcatctcatgaatctaacgagtcgaac 43052866  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||    
T  43052867 tatatgtagctcaagttcagctca 43052890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5795275 - 5795063
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||          
T  5795275 tccaacaaaattcaattagttgtgaataaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattca------ 5795182  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
       |||||||||||||||||   |||||||||||||||||||||||||            |||||||||||| |||||||||||||||||||||| ||||    
T  5795181 ---gccacatttgaattaaatttttttaaaaactaactcaaattgatt--tatatatataatcgataatcgagccatctcatgaacctaacgagttgaac 5795087  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||    
T  5795086 tatatgtagctcaagttcagctca 5795063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 37334099 - 37334296
Alignment:
Q  25 aacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgacatttgccacatttgaattaaaaaat 124  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |    
T  37334099 aacaaaattcataatattcttttacttataaactccaactgctcttcccttcaagacaaaattgtattcagcgacatttgccacatttgaattaattttt 37334198  T
Q  125 tttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||            ||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37334199 tttaaaaactaactcaaattgatt--tatatatataatcgacaatcgagccatctcatgaacctaatgagtcgaactatatgtagctcaagttcagctca 37334296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 37 - 223
Target Start/End: Original strand, 26216106 - 26216289
Alignment:
Q  37 aatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgacatttgccacatttgaattaa-aaaattttaaaaacta 135  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||    
T  26216106 aatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagcgacatttgccacatttgaattaatttttttttaaaaacta 26216205  T
Q  136 actcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 223  Q
    |||||||||||||            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26216206 actcaaattgatt----tatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctc 26216289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42071889 - 42072101
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||          
T  42071889 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgttcttcctttcaagacaaaattgtattca------ 42071982  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
       |||||||||||||||||   |||||||||||||||||||||||||            ||| ||||||||  ||||||||||||||||||||||||||    
T  42071983 ---gccacatttgaattaaatttttttaaaaactaactcaaattgatt--tatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaac 42072077  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||    
T  42072078 tatatgtagctcaagttcagctca 42072101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 36926796 - 36927017
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    ||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||    
T  36926796 tccaacaaaattctattagctgtgaacaaaattcataatat-cttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcaaccaca 36926894  T
Q  101 tttgccacatttgaattaaaaaatttt-aaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaa 199  Q
    |||| ||||||||||||||    |||| |||||||||||||||||||||            ||| |||||| | | ||||||||| ||||||||||||||    
T  36926895 tttgtcacatttgaattaattttttttaaaaaactaactcaaattgatt--tatatatataatcaataatcaagcaatctcatgagcctaacgagtcgaa 36926992  T
Q  200 ctatatgtagctcaagttcagctca 224  Q
    |||||||||||||||||||| ||||    
T  36926993 ctatatgtagctcaagttcaactca 36927017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 5776236 - 5776136
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5776236 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgcc 5776137  T
Q  316 a 316  Q
    |    
T  5776136 a 5776136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 216 - 324
Target Start/End: Complemental strand, 3930822 - 3930714
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  3930822 ttcagctcaagtccagctcgttaggttcatggaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttgtttcggttcattgcc 3930723  T
Q  316 agctctaat 324  Q
    |||||||||    
T  3930722 agctctaat 3930714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 665953 - 665851
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  665953 ttcagctcaagtccagctcgttaggttcatgaaccaaatttaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgcc 665854  T
Q  316 agc 318  Q
    |||    
T  665853 agc 665851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 5795042 - 5794940
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||    
T  5795042 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgggttggttcggttcattgcc 5794943  T
Q  316 agc 318  Q
    |||    
T  5794942 agc 5794940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 37334317 - 37334414
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  37334317 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgaatcgaatgtcgaactataatcgagttggttcggttcattg 37334414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 220 - 316
Target Start/End: Original strand, 43052915 - 43053011
Alignment:
Q  220 gctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcca 316  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43052915 gctcaagtccagctcattaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgcca 43053011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 36927041 - 36927140
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36927041 agctcaagtccaactcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagc 36927140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 28949861 - 28949757
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  28949861 agctcaattccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttgattcggttcattgccagc 28949762  T
Q  319 tctaa 323  Q
     ||||    
T  28949761 cctaa 28949757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 42072122 - 42072224
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| || |||||| |||||||||||||||| |||||| ||||| |    
T  42072122 ttcagctcaagtccagctcgttaggttcatgaatcaagttcaacggattagatatcgaatcgaatgtcaaactataatcgagttgtttcggtacattgtc 42072221  T
Q  316 agc 318  Q
    |||    
T  42072222 agc 42072224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 45176284 - 45176381
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||| |||||||||||||    
T  45176284 ttcagctaaagttcagctcgtttggttcatgaaccaagttcaacggattaattatcgagtcgaatgtcaaactataatcgagtttgttcggttcattg 45176381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 45174986 - 45175092
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    ||||||||||||||| ||| || |||||||||||||||||||||| ||||| |||||| ||| |||||| ||||| |||||||||||||||||||| |||    
T  45174986 tccaacaaaattcaagtagctgagaacaaaattcataatattcttctacttctaaactccaattgctctcccctttaagacaaaattgtattcagccaca 45175085  T
Q  101 tttgcca 107  Q
    | |||||    
T  45175086 tctgcca 45175092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 26216311 - 26216406
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||       || |||||||||||| ||||||||||||||||||||    
T  26216311 ttcagctcaagtccagctcgttaggttcataaaccaagttcaacggattaaatatcg-------tgacgaactataatcaagttggttcggttcattgcc 26216403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 7444186 - 7444294
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||||  | ||||| |||||||||||||||| |||||  ||||| ||| |||||| ||||| |||||||||||||||||||| ||     
T  7444186 tccaacaaaattcaattagccgagaacataattcataatattcttctacttccaaactccaattgctctccccttaaagacaaaattgtattcagccact 7444285  T
Q  101 tttgccaca 109  Q
    |||||||||    
T  7444286 tttgccaca 7444294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 48505894 - 48505799
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| ||       ||||||||||||||||||||||||||||||||| |    
T  48505894 ttcagctcaagtccagctcattaggttcatgaaccaagttcaacggattagatattga-------gtcgaactataatcgagttggttcggttcattgtc 48505802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 5776320 - 5776257
Alignment:
Q  161 atcgataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5776320 atcgataatcgagtcatctcatgaaccgaacgagtcgaactatatgtagctcaagttcagctca 5776257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 28949948 - 28949885
Alignment:
Q  161 atcgataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28949948 atcgataatcgagtcatttcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 28949885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 666035 - 665974
Alignment:
Q  163 cgataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  666035 cgataatcgagccatctcatgaacctaacgagtcgagctatatgtagctcaaattcagctca 665974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28950071 - 28950018
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttactttta 54  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  28950071 tccaacaaaattcaattagctatgaacaaaattcataatattcttttactttta 28950018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 33935547 - 33935654
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| ||||||||| |||||||||||||||||||||   |||| |||||| || | |  | ||||||  ||||||||||||| |||||||||    
T  33935547 ttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattatcgaatcgagtcccaaactattgtcgagttggttcgattcattgcc 33935646  T
Q  316 agctctaa 323  Q
    ||| ||||    
T  33935647 agccctaa 33935654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 45176204 - 45176263
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  45176204 ataatcgagtcatctcatgaacctaacgagtcgaattatatgtagctcaagttcaactca 45176263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 20401038 - 20401132
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    ||||||||| ||| ||  |||||||||||||||| |||||  || ||| || |||||| ||| |||||||||| |||||||||||||||||||||    
T  20401038 agctcaagttcagttcagtaggttcatgaaccaaattcaatggactaattaccgagtcgaatttcgaactatattcgagttggttcggttcattg 20401132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 46652719 - 46652647
Alignment:
Q  236 ttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggtt 308  Q
    ||||||||||||||||||| ||||||||||| |||||| || ||| |||||||||| |||| ||||| |||||    
T  46652719 ttaggttcatgaaccaagtccaacagattaattatcgaatcgaatttcgaactatattcgaattggtccggtt 46652647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 222332 - 222230
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||| |||||| ||||||||| |||||||||||||| ||||||   |||| | |||| |||| |  | ||||||  |||||||||||||||||||||||    
T  222332 ttcagttcaagttcagctcgtttggttcatgaaccaaattcaacgagttaattgtcgaatcaagtcccaaactattgtcgagttggttcggttcattgcc 222233  T
Q  316 agc 318  Q
    |||    
T  222232 agc 222230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 44422007 - 44421905
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| ||||||||| |||||||||||||||||||||   |||| | |||| || | |  | ||||||  ||||||||||||||||||||| |    
T  44422007 ttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcccaaactattgtcgagttggttcggttcattgac 44421908  T
Q  316 agc 318  Q
    |||    
T  44421907 agc 44421905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 18250076 - 18249997
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||||||||||||||  || || |||||| || | | | |||||||  ||||||||||||||||||||||||||    
T  18250076 ggttcatgaaccaagttcaacgaatcaattatcgaatcgagtcttgaactattttcgagttggttcggttcattgccagc 18249997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 20400955 - 20401014
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||| || ||| ||||| |||| |||||||||||||||||||| |||||||||||||||    
T  20400955 ataattgagccaactcattaaccaaacgagtcgaactatatgtaactcaagttcagctca 20401014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 318
Target Start/End: Original strand, 15434312 - 15434346
Alignment:
Q  284 gaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||||||||||||||||||||||||||||    
T  15434312 gaactataatcgagttggttcggttcattgccagc 15434346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 15434282 - 15434315
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaac 249  Q
    ||||||||||||||||||||||||||||||||||    
T  15434282 ttcagctcaagtccagctcgttaggttcatgaac 15434315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 45055770 - 45055867
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcca 316  Q
    ||||||||| | ||||||| |||||||||||||||||||||  | ||| || |||||| | |  |||||| || ||||||||  ||||||||||||||    
T  45055770 agctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattgcca 45055867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 46573695 - 46573610
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagctctaat 324  Q
    |||||||||||||||||||||   | || |||||| || ||| ||||| |||  | |||||||||||||||||||||||| |||||    
T  46573695 ggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaattatttttgagttggttcggttcattgccagccctaat 46573610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 3942135 - 3942195
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  |||||| |||||| |||||| ||||||| || |||||||||||||||||||    
T  3942135 ataatcgagtcatctcgtgaaccaaacgagccgaactacatatagctcaagttcagctcaa 3942195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 324
Target Start/End: Complemental strand, 23227105 - 23226997
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| |||||| || | |||||| |||||||||||||   ||| | |||| || | | |||||||||  |||||||||||||| ||||| ||    
T  23227105 ttcagctcaagttcagctcatttgattcatgtaccaagttcaacaagataattgtcgaatcgagtttcgaactattgtcgagttggttcggatcattacc 23227006  T
Q  316 agctctaat 324  Q
    ||| |||||    
T  23227005 agccctaat 23226997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 324
Target Start/End: Complemental strand, 23236258 - 23236150
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| |||||| || | |||||| |||||||||||||   ||| | |||| || | | |||||||||  |||||||||||||| ||||| ||    
T  23236258 ttcagctcaagttcagctcatttgattcatgtaccaagttcaacaagataattgtcgaatcgagtttcgaactattgtcgagttggttcggatcattacc 23236159  T
Q  316 agctctaat 324  Q
    ||| |||||    
T  23236158 agccctaat 23236150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 44422085 - 44422029
Alignment:
Q  168 atcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||| ||| |||||||||| | |||||||||||||||  |||||||||||||||||    
T  44422085 atcgagccaactcatgaaccaaccgagtcgaactatataaagctcaagttcagctca 44422029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 11595899 - 11595800
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||| | ||||||| |||||||||||||||||||||  | ||| || |||||| | |  |||||| || ||||||||  ||||||||||| ||||    
T  11595899 agctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattgtcagc 11595800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 222399 - 222353
Alignment:
Q  178 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||||||| | |||||||||||||||  |||||||||||||||||    
T  222399 ctcatgaaccaaccgagtcgaactatataaagctcaagttcagctca 222353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 22075102 - 22075204
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| |||||| || ||||| ||||||| |||||||   |||| | |||| || | |    |||||| ||||||||||||||||||||||||    
T  22075102 ttcagctcaagttcagctcatttggttcgtgaaccacgttcaacgagttaattgtcgaatcgagttctaaactattatcgagttggttcggttcattgcc 22075201  T
Q  316 agc 318  Q
    |||    
T  22075202 agc 22075204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 33124734 - 33124836
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| ||  || || ||||||| |||||||||||||   |||| | |||| || | | || ||||||  |||||||||||||||||||||||    
T  33124734 ttcagctcaagttcaattcatttggttcataaaccaagttcaacgagttaattgtcgaatcgagtttcaaactattgtcgagttggttcggttcattgcc 33124833  T
Q  316 agc 318  Q
    |||    
T  33124834 agc 33124836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 33171574 - 33171532
Alignment:
Q  282 tcgaactataatcgagttggttcggttcattgccagctctaat 324  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||    
T  33171574 tcgaactattatcgagttggttcggatcattgccagccctaat 33171532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 30919395 - 30919440
Alignment:
Q  179 tcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||||||||||||||||||| ||| | |||||||||||| ||||    
T  30919395 tcatgaacctaacgagtcgaaccatacgaagctcaagttcaactca 30919440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 33899027 - 33898942
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagctctaat 324  Q
    |||||||||||||||| |||   | ||| | |||| || ||| |||||||||  ||||||||||||||||||||| |||| |||||    
T  33899027 ggttcatgaaccaagtccaatgaactaattctcgaatcgaatatcgaactattttcgagttggttcggttcattgtcagccctaat 33898942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 7e-87; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 3 - 276
Target Start/End: Original strand, 35309406 - 35309664
Alignment:
Q  3 caacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgacatt 102  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  35309406 caacaaaattcaattagctgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttccctttaagacaaaattgaattcagccacatt 35309505  T
Q  103 tgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaacta 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||            |||||||| ||| |||||||||||||||||||||||||||||    
T  35309506 tgccacatttgaattaaaaaattttaaaaactaactcaaattgatt----tatatataatcgataagcgagccatctcatgaacctaacgagtcgaacta 35309601  T
Q  203 tatgtagctcaagttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtc 276  Q
    |||||||||||||||           |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  35309602 tatgtagctcaagtt-----------cagctcgtgaggttcatgaaccaagttcaacggattaaatatcgagtc 35309664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 47603210 - 47602989
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||    
T  47603210 tccaacaaaattcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcaaccaca 47603111  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||            |||||||||||| |||||||||||||||||||||||||||    
T  47603110 tttgccacatttgaattaaatttttttaaaaactaactcaaattgatt--tatatatataatcgataatcgagccatctcatgaacctaacgagtcgaac 47603013  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||    
T  47603012 tatatgtagctcaagttcagctca 47602989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 36418896 - 36419114
Alignment:
Q  4 aacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgacattt 103  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  36418896 aacaaaattcaattagctgtgaacaaaattcataatattattttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccacattt 36418995  T
Q  104 gccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaactat 203  Q
    |||||||||||||||||||| |||||||||||| |||||||||||            ||||||||||||  |||||||||||||||||||||||||||||    
T  36418996 gccacatttgaattaaaaaaatttaaaaactaattcaaattgatt--tatatatataatcgataatcgagtcatctcatgaacctaacgagtcgaactat 36419093  T
Q  204 atgtagctcaagttcagctca 224  Q
    |||||||||||||||||||||    
T  36419094 atgtagctcaagttcagctca 36419114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 37441534 - 37441313
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  37441534 tccaacaaaattcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccaca 37441435  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||            ||||||||||||  |||||||| |||||||||||||||||    
T  37441434 tttgccacatttgaattaaatttttttaaaaactaactcaaattgatt--tatatatataatcgataatcgagacatctcattaacctaacgagtcgaac 37441337  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||    
T  37441336 tatatgtagctcaagttcagctca 37441313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 53 - 224
Target Start/End: Complemental strand, 24470113 - 24469944
Alignment:
Q  53 taaacttcaactgctcttcccttcaagacaaaattgtattcagcgacatttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnn 152  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||        
T  24470113 taaactccaactgctcttcccttcaagacaaaattgtattcagcgacatttgccacatttgaattaaatttttttaaaaactaactcaaattgatt--ta 24470016  T
Q  153 nnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24470015 tatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 24469944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 24469923 - 24469821
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24469923 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgcc 24469824  T
Q  316 agc 318  Q
    |||    
T  24469823 agc 24469821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 7702869 - 7702971
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7702869 ttcagctcaagtccagctcgttagcttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgcc 7702968  T
Q  316 agc 318  Q
    |||    
T  7702969 agc 7702971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 47602968 - 47602866
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  47602968 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgtc 47602869  T
Q  316 agc 318  Q
    |||    
T  47602868 agc 47602866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 32179892 - 32179999
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32179892 ttcagctcaagtccagctcattaggtttatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgcc 32179991  T
Q  316 agctctaa 323  Q
    ||| ||||    
T  32179992 agccctaa 32179999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 220 - 324
Target Start/End: Original strand, 36419139 - 36419243
Alignment:
Q  220 gctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagct 319  Q
    ||||||||||||||| ||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  36419139 gctcaagtccagctcattaggttcatgaaccaagttcgacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagcc 36419238  T
Q  320 ctaat 324  Q
    |||||    
T  36419239 ctaat 36419243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 37441292 - 37441190
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||  ||||||||||||||||| ||||| ||||||||||||||    
T  37441292 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagttgaatgtcgaactataatctagttgattcggttcattgcc 37441193  T
Q  316 agc 318  Q
    |||    
T  37441192 agc 37441190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 32179752 - 32179871
Alignment:
Q  104 gccacatttgaattaaaaaat-tttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaacta 202  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||            ||||||||| ||  ||||||||||||| ||||||||||||||    
T  32179752 gccacatttgaattaaaaaaaatttaaaaactaactcaaattgatttatatatata--atcgataattgagtcatctcatgaaccgaacgagtcgaacta 32179849  T
Q  203 tatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||    
T  32179850 tatgtagctcaagttcagctca 32179871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 25124991 - 25124889
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| | |||| || |||||||||||||||||||||  || || |||| | || |||  |||||| ||||||||||||||||||||||||||    
T  25124991 ttcagctcaagttcggctcatttggttcatgaaccaagttcaacgaatcaattatcaaatcgaattacgaactttaatcgagttggttcggttcattgcc 25124892  T
Q  316 agc 318  Q
    |||    
T  25124891 agc 25124889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 35810752 - 35810854
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| | |||| || |||||||||||||||||||||  || || | |||| || |||  |||||| ||||||||||||||||||||||||||    
T  35810752 ttcagctcaagttcggctcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcattgcc 35810851  T
Q  316 agc 318  Q
    |||    
T  35810852 agc 35810854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 7596427 - 7596524
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    |||||||||||| | |||| || ||||||| |||||||||| ||  || || |||||| ||||||  |||||| ||||||||||||||||||||||||    
T  7596427 ttcagctcaagttcggctcatttggttcataaaccaagttcgacgaatcaattatcgaatcaaattacgaactctaatcgagttggttcggttcattg 7596524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 24575966 - 24576045
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||||||||||||||   | || |||||| |||||| |||||||||  ||||||||||||||||||||| ||||    
T  24575966 ggttcatgaaccaagttcaacgagtcaattatcgaatcaaatctcgaactattttcgagttggttcggttcattgtcagc 24576045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 12224681 - 12224579
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| | |||| || |||||||||||||||||||||   |||| | |||| || |||  ||||||||  ||||||||||||||||||||| |    
T  12224681 ttcagctcaagttcggctcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgaattccgaactattgtcgagttggttcggttcattgtc 12224582  T
Q  316 agc 318  Q
    |||    
T  12224581 agc 12224579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 14578691 - 14578589
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||| ||| | |||| || |||||||||||||||||||||| || || | || | || |||  |||||| |||||||||||||||||||||||| |    
T  14578691 ttcagctccagttcggctcatttggttcatgaaccaagttcaacaaatcaattgtctaatcgaattacgaactctaatcgagttggttcggttcattgtc 14578592  T
Q  316 agc 318  Q
    |||    
T  14578591 agc 14578589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 220 - 318
Target Start/End: Original strand, 15306531 - 15306629
Alignment:
Q  220 gctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||| |||||| || ||||||||||||||||||||   ||||| |||||| || | |  ||||||||  || |||||||||||||||||||||||    
T  15306531 gctcaagttcagctcatttggttcatgaaccaagttcaatgaattaattatcgaatcgagttccgaactattgtcaagttggttcggttcattgccagc 15306629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 47983312 - 47983386
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    ||||| |||||||||||||||| || || |||||| || ||| |||||||||  |||||||||||||||||||||    
T  47983312 ggttcgtgaaccaagttcaacaaatcaattatcgaatcgaatctcgaactattttcgagttggttcggttcattg 47983386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 7016178 - 7016074
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||| |||||| || |||||||||||||||||||||| || || | |||| || | | ||||| | |  ||||||||||||||||||||| ||||    
T  7016178 agctcaagttcagctcatttggttcatgaaccaagttcaacaaatcaattgtcgaatcgagtctcgaattttgttcgagttggttcggttcattgtcagc 7016079  T
Q  319 tctaa 323  Q
     ||||    
T  7016078 cctaa 7016074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 15014349 - 15014449
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||| ||||||| | |||| || |||||||||| ||||||| ||  || || |||||| || |||  |||||| ||||||||||||||||||||||||||    
T  15014349 ttcaactcaagttcggctcatttggttcatgaatcaagttcgacgaatcaattatcgaatcgaattacgaactctaatcgagttggttcggttcattgcc 15014448  T
Q  316 a 316  Q
    |    
T  15014449 a 15014449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 28006407 - 28006483
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||   | || |||||| || ||| |||||||||  |||||||||||||||||||||||    
T  28006407 ggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttcattgcc 28006483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 42916220 - 42916120
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| | |||| || |||||||||||||||||| ||  || || |||||| || |||  |||||  ||||||| ||||||||||||||||||    
T  42916220 ttcagctcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgaattggttcggttcattgcc 42916121  T
Q  316 a 316  Q
    |    
T  42916120 a 42916120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 46265130 - 46265070
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  ||||||||||||| |||||||||| |||||| ||| |||||||||||||||    
T  46265130 ataatcgagtcatctcatgaaccaaacgagtcgacctatatatagttcaagttcagctcaa 46265070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 7996025 - 7996102
Alignment:
Q  236 ttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    ||||||| ||||||||||||||||  || || |||||| || ||| |||||||||  || ||||||||||||||||||    
T  7996025 ttaggtttatgaaccaagttcaacgaatcaattatcgaatcgaatctcgaactattttcaagttggttcggttcattg 7996102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 20349208 - 20349277
Alignment:
Q  244 atgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    ||||| ||||||||||  ||||| ||||||||||||| |  ||||||  |||||||||||||||||||||    
T  20349208 atgaatcaagttcaacgaattaattatcgagtcaaattttaaactatgttcgagttggttcggttcattg 20349277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 325
Target Start/End: Complemental strand, 38061264 - 38061175
Alignment:
Q  236 ttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagctctaatg 325  Q
    |||||||||| || ||||||||||  || || |||| | || ||| ||| |||||  |||||||||||||||||||||||||| ||||||    
T  38061264 ttaggttcataaatcaagttcaacgaatcaattatcaaatcgaatctcgcactattttcgagttggttcggttcattgccagccctaatg 38061175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 7596347 - 7596407
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  ||||||||||| | |||||||||||||| || ||| |||||||||||||||    
T  7596347 ataatcgagtcatctcatgaatcaaacgagtcgaactacatatagttcaagttcagctcaa 7596407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 23916764 - 23916824
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  |||||| |||||| |||||||||||||| || | |||||||||||||||||    
T  23916764 ataatcgagtcatctcgtgaaccaaacgagtcgaactacatattgctcaagttcagctcaa 23916824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 25125071 - 25125011
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||| |||||| |||||| ||||||  |||||| || |||||||||||||||||||    
T  25125071 ataatcgaatcatctcgtgaaccaaacgagctgaactacatatagctcaagttcagctcaa 25125011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 42916300 - 42916240
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  ||||||||||||| |||||||||| |||||| | | |||||||||||||||    
T  42916300 ataatcgagtcatctcatgaaccaaacgagtcgacctatatatggttcaagttcagctcaa 42916240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 42937028 - 42937088
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  |||||| |||||| ||||||| ||||||||  |||||||||||||||||||    
T  42937028 ataatcgattcatctcgtgaaccaaacgagttgaactatacatagctcaagttcagctcaa 42937088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 46265050 - 46264950
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| | |||| ||  ||||||||||||||||| ||  || || |||||| || |||  |||||  ||||||| ||||||||||||||||||    
T  46265050 ttcagctcaagttcggctcatttagttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgaattggttcggttcattgcc 46264951  T
Q  316 a 316  Q
    |    
T  46264950 a 46264950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 6413296 - 6413375
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||||||| |||||||  || || |||| | || ||| |||||||||  ||||||||||||| ||||||||||||    
T  6413296 ggttcatgaaccaggttcaacgaatcaattatcaaatcgaatctcgaactattttcgagttggttcgattcattgccagc 6413375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 7702789 - 7702848
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||||| | |||||||||||||||||||| ||| |||  |||||| ||||||||||||    
T  7702789 ataatcgagctatctcatgaacctaacgagtagaattatgcgtagcttaagttcagctca 7702848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 7841680 - 7841758
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||||||||||||||  ||||| |||||| || | | ||||| |||  ||||||||||||||||||||| ||||    
T  7841680 ggttcatgaaccaagttcaacgaattaattatcgaatcgagtctcgaa-tattttcgagttggttcggttcattgacagc 7841758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 318
Target Start/End: Complemental strand, 45581110 - 45581012
Alignment:
Q  220 gctcaagtccagctcgttaggttcatgaaccaagttcaac-agattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||| || ||| || ||||||||||||||||||||| ||| ||| |||||| || | | |||||||||  || |||||||||||||||||| ||||    
T  45581110 gctcaagttcaactcatttggttcatgaaccaagttcaacgaga-taattatcgaatcgagtttcgaactattttcaagttggttcggttcattgtcagc 45581012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 19508565 - 19508659
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    ||||||||| | ||||||| |||||||||||||||||||||  | ||| || |||||| | |  |||||| || ||||||||  |||||||||||    
T  19508565 agctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattg 19508659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 14796645 - 14796725
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagct 319  Q
    ||||||||||||| |||||||  ||||| ||||||||||| |  |||||| | |||||||| | |||||| |||| |||||    
T  14796645 ggttcatgaaccacgttcaacgaattaattatcgagtcaagttccgaactttgatcgagttagctcggtttattgtcagct 14796725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 14805519 - 14805599
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagct 319  Q
    ||||||||||||| |||||||  ||||| ||||||||||| |  |||||| | |||||||| | |||||| |||| |||||    
T  14805519 ggttcatgaaccacgttcaacgaattaattatcgagtcaagttccgaactttgatcgagttagctcggtttattgtcagct 14805599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 29677559 - 29677523
Alignment:
Q  282 tcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||  ||||||||||||||||||||||||||    
T  29677559 tcgaactattttcgagttggttcggttcattgccagc 29677523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 35810672 - 35810732
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  |||||| |||||| |||||||||||||| || ||| |||||||| ||||||    
T  35810672 ataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcggctcaa 35810732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 40002848 - 40002908
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  |||||| |||| | |||||||||||||| || ||||||||||||| |||||    
T  40002848 ataatcgagtcatctcgtgaatcaaacgagtcgaactacatatagctcaagttcaactcaa 40002908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 318
Target Start/End: Original strand, 50447381 - 50447477
Alignment:
Q  222 tcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||| | |||| || ||||||| ||||||||| |||  ||||| |||||| || | | |||||||||  ||||||||||| ||||||||| ||||    
T  50447381 tcaagttcggctcatttggttcataaaccaagtttaacgaattaattatcgaatcgagtctcgaactattttcgagttggtttggttcattgtcagc 50447477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 19088 - 19309
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  19088 tccaacaaaatttaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccaca 19187  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||            ||| |||||||| ||||||||||||||||||||||||||     
T  19188 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgatt--tatatatataatcaataatcgagccatctcatgaacctaacgagtcgaat 19285  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||    
T  19286 tatatgtagctcaagttcagctca 19309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 19330 - 19437
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19330 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaaaggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgcc 19429  T
Q  316 agctctaa 323  Q
    ||| ||||    
T  19430 agccctaa 19437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 49820778 - 49820995
Alignment:
Q  3 caacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgacatt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49820778 caacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagccacatt 49820877  T
Q  103 tgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaacta 202  Q
    || |||||||||||||||   |||||||||||||||||||||||||            |||||||||||| |||||||||||||||||||||||||||||    
T  49820878 tgtcacatttgaattaaatttttttaaaaactaactcaaattgatt----tatatataatcgataatcgagccatctcatgaacctaacgagtcgaacta 49820973  T
Q  203 tatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||    
T  49820974 tatgtagctcaagttcagctca 49820995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 53369480 - 53369701
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||    
T  53369480 tccaacaaaattcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcctttcaagacaaaattgtattcaaccaca 53369579  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    |||||||||||||||||||    |||||||||||||||||||||||||            |||||||||||| |||||||||||||||||||||||||||    
T  53369580 tttgccacatttgaattaattttttttaaaaactaactcaaattgatt--tatatatataatcgataatcgagccatctcatgaacctaacgagtcgaac 53369677  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||    
T  53369678 tatatgtagctcaagttcagctca 53369701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 12789900 - 12789679
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||    
T  12789900 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctctttccttcaagacaaaattgtattcagccaca 12789801  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    ||||||||||||||| |||    ||| |||||||||||||||||||||            ||| |||||||| |||||||||   |||||| ||| ||||    
T  12789800 tttgccacatttgaaataatttttttaaaaaactaactcaaattgatt--tatatatataatcaataatcgagccatctcattttcctaactagttgaac 12789703  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||    
T  12789702 tatatgtagctcaagttcagctca 12789679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 44791582 - 44791370
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||          
T  44791582 tccaacaaaatttaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattca------ 44791489  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
       ||||||||||||||||    |||||||||||||||||||||||||            ||| ||||||||  ||||||||||||||||||||||||||    
T  44791488 ---gccacatttgaattaattttttttaaaaactaactcaaattgatt--tatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaac 44791394  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    |||||||||||||| |||||||||    
T  44791393 tatatgtagctcaaattcagctca 44791370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 45674636 - 45674848
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||          
T  45674636 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaactccaattgctcttcccttcaagacaaaattgtattca------ 45674729  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
        ||||||| |||||||    |||||||||||||||||||||||||            |||||||||||| |||||||||||||||||||||||||||    
T  45674730 ---accacattagaattaattttttttaaaaactaactcaaattgatt--tatatatataatcgataatcgagccatctcatgaacctaacgagtcgaac 45674824  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||| ||||    
T  45674825 tatatgtagctcaagttcaactca 45674848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 53369906 - 53370014
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  53369906 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagttgaatgtcgaactataatcgagttggttcggttcattgcc 53370005  T
Q  316 agctctaat 324  Q
    ||| |||||    
T  53370006 agccctaat 53370014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 77 - 224
Target Start/End: Original strand, 19852846 - 19852991
Alignment:
Q  77 aagacaaaattgtattcagcgacatttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaacca 176  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||| |||    
T  19852846 aagagaaaattgtattaagccacatttgccacatttgaattaaaaaattttaaaaactaactcaaattgatt--tatatatataatcgataatcgagcca 19852943  T
Q  177 tctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19852944 tctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 19852991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 45674869 - 45674971
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45674869 ttcagctcaagtccagctcgttaggttcatgaaccaagttcgacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgcc 45674968  T
Q  316 agc 318  Q
    |||    
T  45674969 agc 45674971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 69 - 224
Target Start/End: Original strand, 48977436 - 48977589
Alignment:
Q  69 ttcccttcaagacaaaattgtattcagcgacatttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataa 168  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||  |||||||||||||||||||||||            ||||||||    
T  48977436 ttcccttcaagacaaaattgtattcggccacatttgccacatttgaattaaaaaaaattaaaaactaactcaaattgatt--tatatatataatcgataa 48977533  T
Q  169 tcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||| | |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48977534 tcgagctatctcatgaaccgaacgagtcgaactatatgtagctcaagttcagctca 48977589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 50606042 - 50606144
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  50606042 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgaattggttcggttcattgcc 50606141  T
Q  316 agc 318  Q
    |||    
T  50606142 agc 50606144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 21441615 - 21441712
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  21441615 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattg 21441712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 19850521 - 19850612
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtatt 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  19850521 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagagaaaattgtatt 19850612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 12789658 - 12789556
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12789658 ttcagctcaagttcagctcgttaggttcataaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgcc 12789559  T
Q  316 agc 318  Q
    |||    
T  12789558 agc 12789556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 19853012 - 19853114
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |    
T  19853012 ttcagctcaagtccatctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcaaactataatcgagttggttcgattcattgac 19853111  T
Q  316 agc 318  Q
    |||    
T  19853112 agc 19853114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 48977610 - 48977717
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  48977610 ttcagctcatgtccagctcattaggttcatgaacgaagttcaacgaattaaatatcgagtcgaatgtcgaattataatcgagttggttcggttcattgcc 48977709  T
Q  316 agctctaa 323  Q
    ||| ||||    
T  48977710 agccctaa 48977717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 53369752 - 53369885
Alignment:
Q  89 tattcagcgacatttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacct 188  Q
    |||||| | ||||||||||||||||||||||||  |||||||||||||||||||||||||            |||||||||||| |||||||||||||||    
T  53369752 tattcaaccacatttgccacatttgaattaaaattttttaaaaactaactcaaattgatttatatatata--atcgataatcgagccatctcatgaacct 53369849  T
Q  189 aacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  53369850 aacgagtcgaactatatgtagctcaagttcagctca 53369885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 216 - 309
Target Start/End: Complemental strand, 44791349 - 44791256
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttc 309  Q
    ||||| |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  44791349 ttcagttcaagtgcagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttc 44791256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 50605841 - 50606021
Alignment:
Q  25 aacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgacatttgccacatttgaattaaaaaat 124  Q
    ||||||||||| |||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||| |||||||                 |||    
T  50605841 aacaaaattcacaatattcttttacttttaaattccaattgctcttccattcaagacaaaattgtattcagccacatttg-----------------aat 50605923  T
Q  125 tttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||            ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  50605924 tttaaaaactaactcaaattgatt--tatatatataatcaataatcgagccatctcataaacctaacgagtcgaactatatgtagctcaagttcagctca 50606021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 21441535 - 21441594
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21441535 ataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 21441594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 49821016 - 49821075
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagt 275  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49821016 ttcagcttaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagt 49821075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 49378168 - 49378093
Alignment:
Q  34 cataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgacatttgccaca 109  Q
    |||||||||||| |||||  ||||| ||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  49378168 cataatattcttctacttccaaactccaattgctcttcccttaaagacaaaattgtattcagccacatttgccaca 49378093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 326
Target Start/End: Original strand, 22184537 - 22184647
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| ||||||||| |||||||||||||||||||||   |||| | |||| || | |  | ||||||  |||||||||||||||||||||||    
T  22184537 ttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcccaaactattgtcgagttggttcggttcattgcc 22184636  T
Q  316 agctctaatga 326  Q
    ||| |||||||    
T  22184637 agccctaatga 22184647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 325
Target Start/End: Original strand, 9469811 - 9469920
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||||||   |||| || |||||||||||||||||||| |||  || | ||||||| |||  ||||||||| ||||||||||||||||||||| |    
T  9469811 ttcagctcaagtttggctcatttggttcatgaaccaagttcaatagaccaattgtcgagtcgaattacgaactatattcgagttggttcggttcattgtc 9469910  T
Q  316 agctctaatg 325  Q
    ||| ||||||    
T  9469911 agccctaatg 9469920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 51995115 - 51995212
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcca 316  Q
    ||||||||| | |||| || |||||||||||||||||||||  ||||| |||||| || | | |||||||||  ||||||||||||||||||||||||    
T  51995115 agctcaagttcggctcatttggttcatgaaccaagttcaacgaattaattatcgaatcgagtctcgaactattttcgagttggttcggttcattgcca 51995212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 313
Target Start/End: Complemental strand, 49083340 - 49083243
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    ||||| |||||| || ||| ||||||| ||||||||||||||||||| ||| ||||||||| ||| || ||||||  || |||||||||| |||||||    
T  49083340 ttcagatcaagttcaactcattaggtttatgaaccaagttcaacagactaattatcgagtccaatttcaaactattctcaagttggttcgattcattg 49083243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 12673111 - 12673028
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagctcta 322  Q
    |||||||||||||||||||||   | || |||||| || ||| |||||||||  |||||||||||||||||||||||| |||||    
T  12673111 ggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttcattgccaactcta 12673028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 318
Target Start/End: Complemental strand, 28265763 - 28265677
Alignment:
Q  232 ctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||| |||||||||||||||||||||  ||||| || ||| || | | |||||||||  |||||||||||| |||||||||||||    
T  28265763 ctcgtttggttcatgaaccaagttcaacgaattaattaccgaatcgagtctcgaactattttcgagttggttcagttcattgccagc 28265677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 50147024 - 50146926
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgc 314  Q
    |||||||||||||| | || || |||||||||||||||||||||  || || | |||| || |||  |||||| ||||||| |||||||||||||||||    
T  50147024 ttcagctcaagtccggttcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgaattggttcggttcattgc 50146926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 313
Target Start/End: Complemental strand, 36156400 - 36156303
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    |||||||||||| | |||| || |||||| ||||||||||||||  || || | |||| || |||  |||||| ||||||||||||||||||||||||    
T  36156400 ttcagctcaagttcggctcatttggttcaagaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcattg 36156303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 56224179 - 56224287
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| | |||| || |||| || |||||||||||||  ||||| | | ||||||| | |||||||||  | ||||||||||||||||||| |    
T  56224179 ttcagctcaagttcggctcatttggtttattaaccaagttcaacgaattaattgttgagtcaagtttcgaactatgtttgagttggttcggttcattgtc 56224278  T
Q  316 agctctaat 324  Q
    ||| |||||    
T  56224279 agccctaat 56224287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 80554 - 80633
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||||||||||||||  |  || || ||| |||||| |||||||||  ||||||||| ||||||||||||||||    
T  80554 ggttcatgaaccaagttcaacgaaacaattaccgaatcaaatttcgaactattttcgagttggatcggttcattgccagc 80633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 26632970 - 26633069
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| |||||| || |||| |||| |||||||||||   |||| | |||| || | |  |||||||| ||||||||||||||||||||||||    
T  26632970 ttcagctcaagttcagctcatttggttaatgagccaagttcaacgagttaattgtcgaatcgagttacgaactattatcgagttggttcggttcattgcc 26633069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 48731256 - 48731177
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||||||| |||||  ||  || | ||||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  48731256 ggttcatgaaccaaattcaatggaccaattgtcgagtcgaatttcgaactatattcgagttggttcggttcattggcagc 48731177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 52706254 - 52706359
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||| | ||||||| ||||||||||||||||| |||  | ||| || |||||||| |  |||| | || ||||||||  ||||||||||||||||    
T  52706254 agctcaagttcggctcgtttggttcatgaaccaagtttaacgaactaattaccgagtcaagttccgaattttattcgagttgtatcggttcattgccagc 52706353  T
Q  319 tctaat 324  Q
     |||||    
T  52706354 cctaat 52706359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 9469731 - 9469790
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||  ||||||||||||||||||| |||||| || | ||| ||||||||||||||    
T  9469731 ataatcgagtcatctcatgaacctaacgaatcgaaccatctatagttcaagttcagctca 9469790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 36543838 - 36543917
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||||||||||||||  ||  || | ||||||| |||  ||||||||| |||||||||||| |||||||| ||||    
T  36543838 ggttcatgaaccaagttcaatggaccaattgtcgagtcgaattacgaactatattcgagttggttcagttcattgtcagc 36543917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 52813635 - 52813678
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 259  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||    
T  52813635 ttcagcttaagttcagctcgtttggttcatgaaccaagttcaac 52813678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 318
Target Start/End: Complemental strand, 24007993 - 24007907
Alignment:
Q  232 ctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||||||||||||||||||||||  || ||  ||| | || ||| |||||||||  ||||||||||||  ||||||| ||||    
T  24007993 ctcgttaggttcatgaaccaagttcaacgaatcaatcatcaaatcgaatctcgaactattttcgagttggttcaattcattgtcagc 24007907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 40797887 - 40797965
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccag 317  Q
    ||||||||||||||||||||   |  || |||||| |||| | |||||||||  | |||||||||||||||||||||||    
T  40797887 ggttcatgaaccaagttcaatgaaccaattatcgaatcaagtatcgaactatttttgagttggttcggttcattgccag 40797965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 43798396 - 43798350
Alignment:
Q  178 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||||||| ||||||||||||||||  ||||||||||||| ||||    
T  43798396 ctcatgaaccaaacgagtcgaactatacatagctcaagttcaactca 43798350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 48977400 - 48977434
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattca 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  48977400 tccaacaaaattcaattagctgtgaacaaaattca 48977434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 318
Target Start/End: Complemental strand, 55892075 - 55891989
Alignment:
Q  232 ctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||| |||||||||||||||||||||  ||||| || ||| || | | |||||||||  | |||||||||| |||||||| ||||    
T  55892075 ctcgtttggttcatgaaccaagttcaacgaattaattaccgaatcgagtctcgaactatttttgagttggttcagttcattgtcagc 55891989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 22721296 - 22721341
Alignment:
Q  179 tcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||| ||||||||||||||||| || |||||||||| ||||    
T  22721296 tcatgaaccaaacgagtcgaactatatataactcaagttcaactca 22721341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 24008075 - 24008030
Alignment:
Q  179 tcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||| |||||||||||| |||| ||||||||||||| ||||    
T  24008075 tcatgaaccaaacgagtcgaaccatatttagctcaagttcaactca 24008030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 38791728 - 38791769
Alignment:
Q  218 cagctcaagtccagctcgttaggttcatgaaccaagttcaac 259  Q
    |||||||||| |||||| || |||||||||||||||||||||    
T  38791728 cagctcaagttcagctcatttggttcatgaaccaagttcaac 38791769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 48339274 - 48339225
Alignment:
Q  176 atctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||| |||||| |||||||||||||| || ||||| |||||||||||||    
T  48339274 atctcgtgaaccaaacgagtcgaactacatatagcttaagttcagctcaa 48339225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 43387225 - 43387281
Alignment:
Q  168 atcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||| ||| |||||||||| | |||||||||||||||  || ||||||||||||||    
T  43387225 atcgagccaactcatgaaccaaccgagtcgaactatataaagttcaagttcagctca 43387281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 43812243 - 43812183
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  |||||| |||||  |||||||||||||| || ||| |||||||||||||||    
T  43812243 ataatcgagtcatctcgtgaactaaacgagtcgaactacatctagttcaagttcagctcaa 43812183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 52813558 - 52813614
Alignment:
Q  168 atcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||| ||| |||||||||| | ||| |||||||||||  |||||||||||||||||    
T  52813558 atcgagccaactcatgaaccaaccgaatcgaactatataaagctcaagttcagctca 52813614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 8200434 - 8200767
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||    
T  8200434 tccaacaaagttcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcaaccaca 8200533  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    |||||||||||||||||||    ||||| |||||||||||||||||||            |||||||||||| |||||||||||||||||||||||||||    
T  8200534 tttgccacatttgaattaattttttttataaactaactcaaattgatt--tatatatataatcgataatcgagccatctcatgaacctaacgagtcgaac 8200631  T
Q  201 tatatgtagctcaagttcagctc------------------aagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgt 282  Q
    ||||||||||||||||||| |||                  |  | |||||||||||||||||||| |||||||||| |||||||||||||||| |||||    
T  8200632 tatatgtagctcaagttcaactcatttaattaacgaacttaattttcagctcgttaggttcatgaatcaagttcaacggattaaatatcgagtcgaatgt 8200731  T
Q  283 cgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||||||||||||||| ||||||||| ||||    
T  8200732 cgaactataatcgagttggtttggttcattgtcagc 8200767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10346513 - 10346734
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  10346513 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccaca 10346612  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||            ||| ||||||||  |||||||||||| |||||||||||||    
T  10346613 tttgccacatttgaattaaaaaattttaaaaaataactcaaattgatt--tatatatataatcaataatcgagtcatctcatgaacttaacgagtcgaac 10346710  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    |||||||| |||||||||||||||    
T  10346711 tatatgtaactcaagttcagctca 10346734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 10346755 - 10346857
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||| |||||| |||||||||||    
T  10346755 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatagagtcgaatgtcgaactataatcgatttggtttggttcattgcc 10346854  T
Q  316 agc 318  Q
    |||    
T  10346855 agc 10346857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 7957434 - 7957536
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||| ||||||||||| ||||| ||| |||||||||||| |||||  ||||| ||| |||||| | ||| ||||| |||||||||||||| |||    
T  7957434 tccaacaaaactcaattagttgagaacagaatgcataatattcttctacttccaaactccaattgctctcctctttaagactaaattgtattcagctaca 7957533  T
Q  101 ttt 103  Q
    |||    
T  7957534 ttt 7957536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 5640358 - 5640256
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||| |||||| | |||| || |||||||||||||||||| ||  || || |||||| || |||  |||||| ||||||||||||||||||||||||||    
T  5640358 ttcagttcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaactctaatcgagttggttcggttcattgcc 5640259  T
Q  316 agc 318  Q
    |||    
T  5640258 agc 5640256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 10961879 - 10961800
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||||||||||||||  || || | |||| ||||||  | |||| |||||||||||||||||||||||||||||    
T  10961879 ggttcatgaaccaagttcaacgaatcaattgtcgaatcaaattacaaactttaatcgagttggttcggttcattgccagc 10961800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 9950946 - 9950886
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  |||||| |||||| ||||||| |||||| || |||||||||||||||||||    
T  9950946 ataatcgagtcatctcgtgaaccaaacgagttgaactacatatagctcaagttcagctcaa 9950886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 10961982 - 10961922
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  |||||| |||||| |||||||||||||| || ||| |||||||||||||||    
T  10961982 ataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcagctcaa 10961922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 4441491 - 4441428
Alignment:
Q  161 atcgataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||| ||||||||| |||||||||| | ||| |||||||||||  || ||||||||||||||    
T  4441491 atcgattatcgaaccagctcatgaaccaaccgaatcgaactatatacagttcaagttcagctca 4441428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 5640421 - 5640378
Alignment:
Q  182 tgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||    
T  5640421 tgaaccaaacgagtcgaactatatatagttcaagttcagctcaa 5640378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 33110507 - 33110594
Alignment:
Q  231 gctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||| |||||||||||||||||||||  | ||| || |||||| | |  |||||| || ||||||||  ||||||||||||||||    
T  33110507 gctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattgccagc 33110594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 3081890 - 3081845
Alignment:
Q  179 tcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||    
T  3081890 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctca 3081845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 7437272 - 7437317
Alignment:
Q  179 tcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||    
T  7437272 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctca 7437317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 11460097 - 11460020
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcca 316  Q
    |||||||||||||||||||||  || || |||||| || | |  |||||||| || ||||||| ||||||||||||||    
T  11460097 ggttcatgaaccaagttcaacgaatcaattatcgaatcgagttccgaactattattgagttggatcggttcattgcca 11460020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 13312124 - 13312160
Alignment:
Q  282 tcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||  ||||||||||||||||||||||||||    
T  13312124 tcgaactattttcgagttggttcggttcattgccagc 13312160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 17441192 - 17441292
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||| ||||||| || ||| || ||||||||||| |||||||||  ||||| || | | || | | |||||||||  ||| |||||||||||||||||||    
T  17441192 ttcaactcaagttcaactcatttggttcatgaactaagttcaacgaattaattaccaaatcgagtttcgaactattttcgggttggttcggttcattgcc 17441291  T
Q  316 a 316  Q
    |    
T  17441292 a 17441292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 27985076 - 27985016
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  |||||| |||||  |||||||||||||| || ||| |||||||||||||||    
T  27985076 ataatcgagtcatctcgtgaactaaacgagtcgaactacatctagttcaagttcagctcaa 27985016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 41958935 - 41959156
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  41958935 tccaacaaaattcaattagctgtgaacaaaattcataatattcttttaattttaaactccaactgctcttcccttcaagacaaaattgtattcagccaca 41959034  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||            |||||||||||| ||||||||| |||||||||||||||||    
T  41959035 tttgccacatttgaattaaatttttttaaaaactaactcaaattgatt--tatatatataatcgataatcgagccatctcattaacctaacgagtcgaac 41959132  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||| | ||||||||||    
T  41959133 tatatgtagcttatgttcagctca 41959156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 36538448 - 36538669
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  36538448 tccaacaaaattcaattaattgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccaca 36538547  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    |||| ||||||||||||||    |||||||||||||||||||||||||            ||| ||||||||  ||||||||||||||||||||||||||    
T  36538548 tttgtcacatttgaattaattttttttaaaaactaactcaaattgatt--tatatatataatcaataatcgagtcatctcatgaacctaacgagtcgaac 36538645  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||| ||||||    
T  36538646 tatatgtagctcaagtttagctca 36538669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34064506 - 34064718
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||          
T  34064506 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattca------ 34064599  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
       ||||||||||||||||    |||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||    
T  34064600 ---gccacatttgaattaattttttttaaaaactaactcaaattgatt--tatatatataatcgataatcgaaccatctcatgaacctaacgagtcgaac 34064694  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||    
T  34064695 tatatgtagctcaagttcagctca 34064718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 33831252 - 33831440
Alignment:
Q  25 aacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgacatttgccacatttgaattaaaaaat 124  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||         |||||||||||||||||   |    
T  33831252 aacaaaatttataatattcttttacttttaaactccaactgctcttccattcaagacaaaattgtattca---------gccacatttgaattaaatttt 33831342  T
Q  125 tttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33831343 tttaaaaactaactcaaattgatt--tatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 33831440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 27634705 - 27634807
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27634705 ttcagctcaagtccagctcgttaggttcatgaactaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgcc 27634804  T
Q  316 agc 318  Q
    |||    
T  27634805 agc 27634807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 33831529 - 33831637
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33831529 ttcagctcaagtccagctcgttaggttcatgaaccaaattcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgcc 33831628  T
Q  316 agctctaat 324  Q
    ||| |||||    
T  33831629 agccctaat 33831637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 26436167 - 26436270
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||    
T  26436167 tccaacaaaattcaattagctgtgaacaaaattcataatattcttttacttttatactccaactgctcttcccttcaagacaaaattgtattcagccaca 26436266  T
Q  101 tttg 104  Q
    ||||    
T  26436267 tttg 26436270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 33164086 - 33163990
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcatt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| |||||||||||||||    
T  33164086 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgaattggttcggttcatt 33163990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 36538690 - 36538792
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||| ||||||||| |    
T  36538690 ttcagctcaagtccaactcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggtttggttcattgtc 36538789  T
Q  316 agc 318  Q
    |||    
T  36538790 agc 36538792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 41959177 - 41959279
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||||||||| |    
T  41959177 ttcagctcaagtccagctcgttaggttcatgaatcaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttgattcggttcattgtc 41959276  T
Q  316 agc 318  Q
    |||    
T  41959277 agc 41959279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 27633532 - 27633640
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||| ||| || | |||||||||||||||||||||||||||| |||    
T  27633532 tccaacaaaattcaattagctgtgaacaaaattcataatattattttacttctaaactccaattgttattcccttcaagacaaaattgtattcagccaca 27633631  T
Q  101 tttgccaca 109  Q
    |||||||||    
T  27633632 tttgccaca 27633640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 26436388 - 26436486
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||||    
T  26436388 ttcagctcacgttcagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtc-aattataatcgagttggttcggttcattgcc 26436486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 34064739 - 34064833
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttca 310  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| ||||| |||||||||||||||| ||||||||||||||||    
T  34064739 ttcagctcaagtccagctcgttaggttcatgaactaagttcaacggattagatattgagtcgaatgtcgaactataattgagttggttcggttca 34064833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 26436304 - 26436367
Alignment:
Q  161 atcgataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26436304 atcgataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 26436367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 33831458 - 33831508
Alignment:
Q  174 ccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33831458 ccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 33831508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 27634635 - 27634684
Alignment:
Q  175 catctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27634635 catctcatgaacctaacgagtcaaactatatgtagctcaagttcagctca 27634684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 3409294 - 3409192
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| ||| || || |||||||||||||||||||||   |||| | |||| || | | |||||||||  |||||||||||||||||||||||    
T  3409294 ttcagctcaagttcagttcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtttcgaactattgtcgagttggttcggttcattgcc 3409195  T
Q  316 agc 318  Q
    |||    
T  3409194 agc 3409192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 27464655 - 27464576
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||||||| ||||||| || || |||||| |||| | |||||||||  ||||||||||||||||||||| ||||    
T  27464655 ggttcatgaaccaaattcaacaaatcaattatcgaatcaagtctcgaactattttcgagttggttcggttcattgtcagc 27464576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 44740586 - 44740487
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||| ||||||||| |||||||||||||||||||||   |||| | |||| || | |  | ||||||  ||||||||||||||||||||||||||    
T  44740586 agctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcccaaactattgtcgagttggttcggttcattgccagc 44740487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 30713190 - 30713292
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||| || | |||| || |||||||||||||||||| ||  || || |||||| || |||  |||||  ||||||||||||||||||||||||||    
T  30713190 ttcagctcatgttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgagttggttcggttcattgcc 30713289  T
Q  316 agc 318  Q
    |||    
T  30713290 agc 30713292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 319
Target Start/End: Complemental strand, 24844772 - 24844669
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaac-agattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgc 314  Q
    |||||||||||| |||||| || ||||||||||||||||||||| ||| ||| |  ||| || | | ||||||||| ||||||||||||||| ||||||     
T  24844772 ttcagctcaagttcagctcatttggttcatgaaccaagttcaacgaga-taattgccgaatcgagtttcgaactattatcgagttggttcggatcattgt 24844674  T
Q  315 cagct 319  Q
    |||||    
T  24844673 cagct 24844669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 34116359 - 34116299
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  |||| |||||||| |||||||||||||| || |||||||||||||||||||    
T  34116359 ataatcgagtcatcacatgaaccaaacgagtcgaactacatatagctcaagttcagctcaa 34116299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 39690124 - 39690184
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  ||||||||||||| |||||||||||||| || ||||||||||||| |||||    
T  39690124 ataatcgagtcatctcatgaaccaaacgagtcgaactacatatagctcaagttcaactcaa 39690184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 11027873 - 11027922
Alignment:
Q  176 atctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||| |||||| |||||||||||||| || |||||||||||||||||||    
T  11027873 atctcgtgaaccaaacgagtcgaactacatatagctcaagttcagctcaa 11027922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 41332288 - 41332365
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcca 316  Q
    |||| |||||||||||||||||  |||| | |||| || | | |||||||||| ||||||||||| ||||||||||||    
T  41332288 ggtttatgaaccaagttcaacaagttaattgtcgaatcgagtttcgaactatattcgagttggtttggttcattgcca 41332365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 318
Target Start/End: Original strand, 11027948 - 11028044
Alignment:
Q  222 tcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||| | |||| || |||||||||||||||||| ||  || || |||||| |  |||  |||||| |||| ||||||||||||||||||||||||    
T  11027948 tcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaattgaattacgaactctaattgagttggttcggttcattgccagc 11028044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20986456 - 20986506
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttactt 51  Q
    |||||||||||||||||||  | ||||| |||||||||||||||| |||||    
T  20986456 tccaacaaaattcaattagccgagaacataattcataatattcttctactt 20986506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 27902613 - 27902564
Alignment:
Q  176 atctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||| |||||| |||||||||||||| || ||||||||||||| |||||    
T  27902613 atctcgtgaaccaaacgagtcgaactacatatagctcaagttcaactcaa 27902564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 29806885 - 29806930
Alignment:
Q  179 tcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||||||||||||||||||| ||| | |||||||||||| ||||    
T  29806885 tcatgaacctaacgagtcgaaccatacgaagctcaagttcaactca 29806930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 34116276 - 34116179
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcca 316  Q
    ||||||||| | |||| || ||||||||||| |||||| ||| || || |||  | || |||  |||||| ||||||||||||||||| |||||||||    
T  34116276 agctcaagttcggctcatttggttcatgaactaagttcgacaaatcaattattaaatcgaattacgaactctaatcgagttggttcggctcattgcca 34116179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 40458889 - 40458934
Alignment:
Q  179 tcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||    
T  40458889 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctca 40458934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 2647077 - 2647037
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaac 259  Q
    ||||||||| | ||||||| |||||||||||||||||||||    
T  2647077 agctcaagttcggctcgtttggttcatgaaccaagttcaac 2647037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 41609679 - 41609901
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  41609679 tccaacaaaattcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcagccaca 41609778  T
Q  101 tttgccacatttgaattaaaaaatttt-aaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaa 199  Q
    |||||| ||||||||||||    |||| |||||||||||||||||||||            ||||||||||||  ||||||||||||| |||||||||||    
T  41609779 tttgcctcatttgaattaattttttttaaaaaactaactcaaattgatt--tatatatataatcgataatcgagtcatctcatgaacccaacgagtcgaa 41609876  T
Q  200 ctatatgtagctcaagttcagctca 224  Q
    |||||||||||||||||||||||||    
T  41609877 ctatatgtagctcaagttcagctca 41609901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 32688972 - 32689182
Alignment:
Q  3 caacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgacatt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||            
T  32688972 caacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattca-------- 32689063  T
Q  103 tgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaacta 202  Q
     |||||||||||||||||||||||||||||||||||||||||||||            ||| ||||| ||  |||||||||||| |||||||||||||||    
T  32689064 -gccacatttgaattaaaaaattttaaaaactaactcaaattgatt--tatatatataatcaataattgagtcatctcatgaacttaacgagtcgaacta 32689160  T
Q  203 tatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||    
T  32689161 tatgtagctcaagttcagctca 32689182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 23206656 - 23206434
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||||||||||||| |||||||    
T  23206656 tccaacaaaatttaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgttttttccttcaagacaaaattgtattaagcgaca 23206557  T
Q  101 tttgccacatttgaattaa-aaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaa 199  Q
    |||||||||||||||||||     |||||||||||||||||||||||||            ||||||||| ||  ||||||||||||||||  |||||||    
T  23206556 tttgccacatttgaattaatttttttttaaaaactaactcaaattgatt--tatatatataatcgataattgagtcatctcatgaacctaataagtcgaa 23206459  T
Q  200 ctatatgtagctcaagttcagctca 224  Q
    |||||||||||| ||||||||||||    
T  23206458 ctatatgtagcttaagttcagctca 23206434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 23206414 - 23206312
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  23206414 ttcagctcaagtccagctcgttaggttcatgaacaaagttcaacagattaaatatcaagtcgaatgtcgaactataatcgagttggttcggttcattgcc 23206315  T
Q  316 agc 318  Q
    |||    
T  23206314 agc 23206312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 32689203 - 32689305
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |    
T  32689203 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgtc 32689302  T
Q  316 agc 318  Q
    |||    
T  32689303 agc 32689305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 41609922 - 41610021
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  41609922 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttgg-tcggttcattgcc 41610020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 39942906 - 39942806
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| |||||| ||| ||||||||||||||||||||||||||| |  ||| || ||| |||||||||| |||||||||||| ||||||||||    
T  39942906 ttcagctcaagttcagctcattaagttcatgaaccaagttcaacagattaattgccgaatcgaatttcgaactatactcgagttggttcagttcattgcc 39942807  T
Q  316 a 316  Q
    |    
T  39942806 a 39942806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 165 - 322
Target Start/End: Original strand, 45714679 - 45714836
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagatt 264  Q
    ||||||||  |||||| |||||| |||||||||||||| || ||| ||||||||||||||||| |  ||| || | || ||||| ||||||||||  ||     
T  45714679 ataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcagctcaagttcgactcatttgatttatgaatcaagttcaacgaatc 45714778  T
Q  265 aaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagctcta 322  Q
    || | |||| || |||  |||||| ||||||||||||||| |||||||||||||||||    
T  45714779 aattgtcgaatcgaataacgaactttaatcgagttggttcagttcattgccagctcta 45714836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 318
Target Start/End: Complemental strand, 19560875 - 19560778
Alignment:
Q  221 ctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||| ||||| |||  ||||||||||||||||||||  ||||| | ||||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  19560875 ctcaagttcagcttgtttcgttcatgaaccaagttcaacgaattaattgtcgagtcgaattccgaactatattcgagttggttcggttcattgccagc 19560778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 39134152 - 39134260
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    ||||||||||||||||||  ||  |||| |||||||||||||||| |||||  ||||| ||| |||||| | ||||||||| |||||||||||||  |||    
T  39134152 tccaacaaaattcaattaactgataacataattcataatattcttctacttccaaactccaattgctctcctcttcaagacgaaattgtattcagtcaca 39134251  T
Q  101 tttgccaca 109  Q
    |||||||||    
T  39134252 tttgccaca 39134260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 25253739 - 25253838
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||| |||||| || ||||||||||||||||||||||  || | | ||||||| | |  | ||||||| ||||||||||||||||||||||||||    
T  25253739 agctcaagttcagctcatttggttcatgaaccaagttcaacaagtttattgtcgagtcgagttccaaactatattcgagttggttcggttcattgccagc 25253838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 54393549 - 54393447
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| | |||| || |||| ||||||||||||||||  || || | |||| || |||  |||||| ||||||||||||||||||||||||||    
T  54393549 ttcagctcaagttcggctcatttggtttatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcattgcc 54393450  T
Q  316 agc 318  Q
    |||    
T  54393449 agc 54393447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 26049621 - 26049544
Alignment:
Q  241 ttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||||||||||||||| | || |||||| || ||| || ||||||  ||||||||||||||||||||||||||    
T  26049621 ttcatgaaccaagttcaacaggtcaattatcgaatcgaatctcaaactattttcgagttggttcggttcattgccagc 26049544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 12710759 - 12710838
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||||||||||||||   | || |||||| || ||| |||||||||  ||||||||||||||||||||||||||    
T  12710759 ggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttcattgccagc 12710838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 52199463 - 52199570
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| ||||||||| |||||||||||||||||||||  ||||| | |||| || | |  | ||||||  ||||||||||||| ||||||| |    
T  52199463 ttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgaattaattgtcgaatcgagtcccaaactattgtcgagttggttcgattcattgtc 52199562  T
Q  316 agctctaa 323  Q
    ||| ||||    
T  52199563 agccctaa 52199570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 44574480 - 44574539
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||||| | | |||||||||| |||||| ||||||||||||||||||||||| |||||    
T  44574480 ataatcgagctaactcatgaaccaaacgagccgaactatatgtagctcaagttcggctca 44574539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 33438837 - 33438735
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| |  ||| || |||||||||||||||||||||  || || | |||| || |||  | |||| |||||||||||||||||||||||| |    
T  33438837 ttcagctcaagttcgactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacaaactttaatcgagttggttcggttcattgtc 33438738  T
Q  316 agc 318  Q
    |||    
T  33438737 agc 33438735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 44574565 - 44574662
Alignment:
Q  221 ctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||| |||||| ||||||||| |||| |||||||||  ||||| |  |||||| |   |||||||||| ||||||||  ||||||||||||||||    
T  44574565 ctcaagttcagctcattaggttcacgaactaagttcaacgaattaattgccgagtcgagcttcgaactatattcgagttgtctcggttcattgccagc 44574662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 39469637 - 39469541
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcatt 312  Q
    |||||||||||| | |||| || | ||||||||||||||||||  ||  || |||||| || |||  ||||||||| |||||||||||| |||||||    
T  39469637 ttcagctcaagttcggctcatttgattcatgaaccaagttcaatggaccaattatcgaatcgaattacgaactatattcgagttggttcagttcatt 39469541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 20550285 - 20550211
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    ||||| |||||||||||||||| || || |||||| || | | |||||||||  ||||||||||| |||||||||    
T  20550285 ggttcgtgaaccaagttcaacaaatcaattatcgaatcgagtatcgaactattttcgagttggtttggttcattg 20550211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 33896797 - 33896843
Alignment:
Q  178 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||||||  ||||||||||||||||| || |||||||||||||||    
T  33896797 ctcatgaactaaacgagtcgaactatatataactcaagttcagctca 33896843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 46293319 - 46293217
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| | |||| || |||||||||||||| |||||  ||  || | || |||| ||| | |||||||| |||||||| |||||||||||| |    
T  46293319 ttcagctcaagttcggctcatttggttcatgaaccaaattcaattgaccaattgtcaagtcgaattttgaactatattcgagttgattcggttcattgtc 46293220  T
Q  316 agc 318  Q
    |||    
T  46293219 agc 46293217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 28242540 - 28242592
Alignment:
Q  168 atcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcag 220  Q
    ||||| ||| |||||||||| | |||||||||||||||  |||||||||||||    
T  28242540 atcgagccagctcatgaaccaaccgagtcgaactatatacagctcaagttcag 28242592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 28242617 - 28242717
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||| | |||||| || |||||||||||||| ||||||   |||| | |||| |||| |  |||| |||  |||||||| ||||||||||||||    
T  28242617 ttcagctcaaattcagctcatttggttcatgaaccaaattcaacgagttaattgtcgaatcaagttccgaattattgtcgagttgattcggttcattgcc 28242716  T
Q  316 a 316  Q
    |    
T  28242717 a 28242717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 52199346 - 52199402
Alignment:
Q  168 atcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||| ||| |||||||||| |  ||||||||||||||  |||||||||||||||||    
T  52199346 atcgagccaactcatgaaccaactgagtcgaactatataaagctcaagttcagctca 52199402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 54393629 - 54393569
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  |||||| |||||| |||||||||||||| || ||| |||||||| ||||||    
T  54393629 ataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcggctcaa 54393569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 54432217 - 54432181
Alignment:
Q  282 tcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||  ||||||||||||||||||||||||||    
T  54432217 tcgaactattttcgagttggttcggttcattgccagc 54432181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 9e-68; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 18879986 - 18880205
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||    
T  18879986 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaattgtattcaaccaca 18880085  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    ||||||||||||||||| |||  ||||||||||| |||||||||||||            ||| |||||||| |||||||||| ||||||||||| ||||    
T  18880086 tttgccacatttgaatt-aaattttttaaaaact-actcaaattgatt--tatatatataatcaataatcgagccatctcatgtacctaacgagttgaac 18880181  T
Q  201 tatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||    
T  18880182 tatatgtagctcaagttcagctca 18880205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 22921842 - 22922053
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  22921842 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaactccaactgctcttcccttcaagacaaaatcgtattcagccaca 22921941  T
Q  101 tttgccacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaac 200  Q
    |||| ||||||||||||||    |||||||||||||||||||||||||            ||| |||||||| ||||||||||||||||||||||| |||    
T  22921942 tttgtcacatttgaattaattttttttaaaaactaactcaaattgatt--tatatatataatcaataatcgagccatctcatgaacctaacgagtctaac 22922039  T
Q  201 tatatgtagctcaa 214  Q
    ||||||||||||||    
T  22922040 tatatgtagctcaa 22922053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27905889 - 27906111
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||    
T  27905889 tccaacaaaattcaattagctgtgaacaaaattcataatattcttttacttttaaactccaactgctcttctcttcaagacaaaattgtattcagccaca 27905988  T
Q  101 tttgccacatttgaatta-aaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaa 199  Q
    ||||||||||||||||||      |||||||||||||||||||||||||            ||| |||||||| ||||||||||| |||||| |||||||    
T  27905989 tttgccacatttgaattattttttttttaaaaactaactcaaattgatt--tatatatataatcaataatcgagccatctcatgagcctaacaagtcgaa 27906086  T
Q  200 ctatatgtagctcaagttcagctca 224  Q
    |||||||||||||||||||||||||    
T  27906087 ctatatgtagctcaagttcagctca 27906111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 29327825 - 29327973
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||   |||    
T  29327825 tccaacaaaattcaattagctgtgaacaaaattcataatattcttttacttttaaactccaattgctcttcccttcaagacaaaattgtattcaatcaca 29327924  T
Q  101 tttgccacatttgaattaaa-aaattttaaaaactaactcaaattgatt 148  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||    
T  29327925 tttgccacatttgaattaaattttttttaaaaactaactcaaattgatt 29327973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 27906132 - 27906234
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27906132 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgcc 27906231  T
Q  316 agc 318  Q
    |||    
T  27906232 agc 27906234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 18880226 - 18880328
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |    
T  18880226 ttcagcttaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgtc 18880325  T
Q  316 agc 318  Q
    |||    
T  18880326 agc 18880328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 29328078 - 29328184
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| |    
T  29328078 ttcagctcaagtccagct-gttaggttcatgaatcaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagtttgttcggttcattgtc 29328176  T
Q  316 agctctaa 323  Q
    ||| ||||    
T  29328177 agccctaa 29328184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 15933200 - 15933299
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||| || || ||| ||||||||||||||||||||||||  ||||| | ||||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  15933200 agctcatgttcaactcattaggttcatgaaccaagttcaacgaattaactgtcgagtcgaatttcgaactatactcgagttggttcggttcattgccagc 15933299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 383 - 471
Target Start/End: Complemental strand, 18589065 - 18588975
Alignment:
Q  383 gtccaaattggtcctactaatctagagttttcgaatagaatatagaa-aagttttttgttt-cttgatatacccagaatttttagttgtcg 471  Q
    |||||||| ||||||||||||| ||||||||| |||||||| |||   ||||||||||||| |||||||||||||||||||||||||||||    
T  18589065 gtccaaatcggtcctactaatccagagttttctaatagaatctaggggaagttttttgttttcttgatatacccagaatttttagttgtcg 18588975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 38522967 - 38522865
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||||||||   |||| || ||||||||||||||||||||  ||  || |||||||||||||  ||||||||| |||||||||||||||||||||||    
T  38522967 ttcagctcaagtttggctcatttggttcatgaaccaagttcaatggaccaattatcgagtcaaattacgaactatattcgagttggttcggttcattgcc 38522868  T
Q  316 agc 318  Q
    |||    
T  38522867 agc 38522865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 3801470 - 3801368
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| | |||| || ||||||||||||||||||||   |  || | ||||||| |||  ||||||||| |||||||||||||||||||||||    
T  3801470 ttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattacgaactatattcgagttggttcggttcattgcc 3801371  T
Q  316 agc 318  Q
    |||    
T  3801370 agc 3801368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 3805160 - 3805058
Alignment:
Q  1 tccaacaaaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgaca 100  Q
    |||||||||| ||||||||| |  |||| ||| ||||||||| || |||||  ||||| ||| |||||| ||||| |||||||||||||||||||| |||    
T  3805160 tccaacaaaactcaattagtcgataacagaatgcataatatttttctacttccaaactccaattgctctccccttaaagacaaaattgtattcagccaca 3805061  T
Q  101 ttt 103  Q
    |||    
T  3805060 ttt 3805058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 31620902 - 31621004
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    ||||||| |||| || ||| ||||||||||||||||| |||||  || ||| | ||||||| ||| |||||||||| || |||||||||||||||||| |    
T  31620902 ttcagctgaagttcaactcattaggttcatgaaccaaattcaatggactaattgtcgagtcgaatttcgaactatattcaagttggttcggttcattgtc 31621001  T
Q  316 agc 318  Q
    |||    
T  31621002 agc 31621004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 29327991 - 29328037
Alignment:
Q  162 tcgataatcgaaccatctcatgaacctaacgagtcgaactatatgta 208  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||    
T  29327991 tcgataatcgagtcatctcatgaacctaacgagtcgaactatatgta 29328037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 318
Target Start/End: Original strand, 20189013 - 20189109
Alignment:
Q  222 tcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||| | |||| || |||||||||||||||||| ||  || || |||||| ||||||  |||||| ||||||||||| |||||||||||| ||||    
T  20189013 tcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcaaattacgaactctaatcgagttgattcggttcattgtcagc 20189109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 20190770 - 20190710
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  ||||||||||||| ||||| |||||||| || |||||||||||||||||||    
T  20190770 ataatcgagtcatctcatgaaccaaacgattcgaactacatatagctcaagttcagctcaa 20190710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 34719739 - 34719655
Alignment:
Q  240 gttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagctctaat 324  Q
    ||||||||| ||||||||||  || || |||||| |||||| ||| |||||  ||||||||||||| |||||||||||| |||||    
T  34719739 gttcatgaatcaagttcaacgaatcaattatcgaatcaaatctcgcactattttcgagttggttcgtttcattgccagccctaat 34719655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 14500809 - 14500710
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||| | ||||||| |||||||||||||||||||||  | ||| ||||||||| | |  |||||| || ||||||||  |||||||||| |||||    
T  14500809 agctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaattatcgagtcgagttccgaactgtattcgagttgtatcggttcatttccagc 14500710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 20188937 - 20188987
Alignment:
Q  175 catctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    |||||| |||||| |||||||||||||| || |||||||||||||||||||    
T  20188937 catctcgtgaaccaaacgagtcgaactacatatagctcaagttcagctcaa 20188987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 27450667 - 27450585
Alignment:
Q  236 ttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||||||| ||| ||||||  || || |||||| || ||| ||| |||||  ||||||||||||||||||||||||||    
T  27450667 ttaggttcatgaatcaaattcaacgaatcaattatcgaatcgaatctcgcactattttcgagttggttcggttcattgccagc 27450585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 31021900 - 31021994
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    ||||||| | |||||| || ||||||||||||||  |||||   |||| ||||||||| | |  ||||||||| |||||||||||||||||||||    
T  31021900 agctcaaattcagctcatttggttcatgaaccaaactcaacgagttaattatcgagtcgagttccgaactatattcgagttggttcggttcattg 31021994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 313
Target Start/End: Complemental strand, 19282220 - 19282123
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    |||||||||||| |||||| || |||||||||||||||||||||   |||| | |||| | || |  |||||||| ||||||||||||| | ||||||    
T  19282220 ttcagctcaagttcagctcatttggttcatgaaccaagttcaacgagttaattgtcgaatgaagttccgaactattatcgagttggttcagctcattg 19282123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 1840793 - 1840693
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| |||||| || |||||||||||||||||||||   |||| | |||| |  | |   |||||||  |||||||||||||||||||||||    
T  1840793 ttcagctcaagttcagctcatttggttcatgaaccaagttcaacgagttaattgtcgaattgagttctgaactattgtcgagttggttcggttcattgcc 1840694  T
Q  316 a 316  Q
    |    
T  1840693 a 1840693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 324
Target Start/End: Original strand, 26298365 - 26298453
Alignment:
Q  236 ttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagctctaat 324  Q
    ||||||||||||| ||||||||||  || || |||||| || ||| ||  |||||  | |||||||||||||||||||||||| |||||    
T  26298365 ttaggttcatgaatcaagttcaacgaatcaattatcgaatcgaatctcacactatttttgagttggttcggttcattgccagccctaat 26298453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 312
Target Start/End: Original strand, 39414224 - 39414312
Alignment:
Q  224 aagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcatt 312  Q
    |||| |||||| ||||||||||| ||||||||||||   |||| | |||| | || | |||||||||  ||||||||||||||||||||    
T  39414224 aagttcagctcattaggttcatggaccaagttcaacgagttaattgtcgaattaagtttcgaactattgtcgagttggttcggttcatt 39414312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 17168520 - 17168441
Alignment:
Q  245 tgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagctctaat 324  Q
    |||||||||||||||| |||||||||||| || | | || ||||||  |||||||  |||||||||||| ||||| ||||    
T  17168520 tgaaccaagttcaacaaattaaatatcgaatctagtctcaaactattttcgagttacttcggttcattgtcagctgtaat 17168441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 19282304 - 19282241
Alignment:
Q  161 atcgataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||| ||||||||| |||||||| | | |||||||||||||||  || ||||||||||||||    
T  19282304 atcgattatcgaaccagctcatgaatcaaccgagtcgaactatatacagttcaagttcagctca 19282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 26218084 - 26218183
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||| | ||||||| |||||||||||||||||||||  | ||| || |||||| | |  |||||| || | ||||||  ||||||||||||||||    
T  26218084 agctcaagttcggctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttatttgagttgtatcggttcattgccagc 26218183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 31620822 - 31620881
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    |||||||| |||  |||| |||| ||||||||||| |||||||| |||||||||||||||    
T  31620822 ataatcgagccaagtcattaaccaaacgagtcgaattatatgtaactcaagttcagctca 31620881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 26299901 - 26299983
Alignment:
Q  236 ttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||||||  |||||||||  || || |||||| || ||| ||| |||||  |||||||||||||||||||| |||||    
T  26299901 ttaggttcatgaatgaagttcaacgaatcaattatcgaatcgaatctcgcactattttcgagttggttcggttcatttccagc 26299983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 28247473 - 28247551
Alignment:
Q  245 tgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagctctaa 323  Q
    |||||||||||||||  || || |||| | |||||| |||||||||  |||| |||||||||||||||| |||| ||||    
T  28247473 tgaaccaagttcaacgaatcaattatcaaatcaaatatcgaactattttcgaattggttcggttcattgtcagccctaa 28247551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 39407460 - 39407542
Alignment:
Q  236 ttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||||||| ||||||||||  || || |||||| || ||| ||| |||||  | |||||||||||||||||| |||||    
T  39407460 ttaggttcatgaatcaagttcaacgaatcaattatcgaatcgaatctcgcactatttttgagttggttcggttcattaccagc 39407542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 10493953 - 10493998
Alignment:
Q  179 tcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||    
T  10493953 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctca 10493998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 20190687 - 20190591
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcca 316  Q
    ||||||||| | |||| || |||||||||||||||||| |   || || |||||| || |||  |||||| |||| ||||||||||||||||||||||    
T  20190687 agctcaagttcggctcatttggttcatgaaccaagttcgatgaatcaattatcgaatcgaattacgaact-taatagagttggttcggttcattgcca 20190591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 32945104 - 32945020
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagctctaa 323  Q
    ||||||||||||||||| |||  || || || ||| || | | |||||||||  ||||||||||||||||||||| |||| ||||    
T  32945104 ggttcatgaaccaagtttaacgaatcaattaccgaatcgagtttcgaactattttcgagttggttcggttcattgtcagccctaa 32945020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 11161397 - 11161585
Alignment:
Q  25 aacaaaattcataatattcttttacttttaaacttcaactgctcttcccttcaagacaaaattgtattcagcgacatttgccacatttgaattaaaaaat 124  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||     
T  11161397 aacaaaattcataatattattttacttttaaacttcaactgctcttcccttcaagacaaaattgtattca---------gccacatttgaattaaacaaa 11161487  T
Q  125 tttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 224  Q
    ||||||||||||||||||||||||            ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11161488 tttaaaaactaactcaaattgatt--tatatatataatccataatcgagccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctca 11161585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 453289 - 453496
Alignment:
Q  8 aaattcaattagttgtgaacaaaattcataatattcttttacttttaaacttcaactg--ctcttcccttcaagacaaaattgtattcagcgacatttgc 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||         ||    
T  453289 aaattcaattagttatgaacaaaattcataatattcttttacttttaaactccaactgctctcttcccttcaagacaaaattgtattca---------gc 453379  T
Q  106 cacatttgaattaaaaaattttaaaaactaactcaaattgattnnnnnnnnnnnnatcgataatcgaaccatctcatgaacctaacgagtcgaactatat 205  Q
    ||||||||||||||    |||||||||||||||||||||||||            |||||||||||| ||||||||||||||||||||||||||||||||    
T  453380 cacatttgaattaattttttttaaaaactaactcaaattgatt--tatatatataatcgataatcgagccatctcatgaacctaacgagtcgaactatat 453477  T
Q  206 gtagctcaagttcagctca 224  Q
    |||||||||||||| ||||    
T  453478 gtagctcaagttcaactca 453496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 453517 - 453619
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  453517 ttcaactcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgcc 453616  T
Q  316 agc 318  Q
    |||    
T  453617 agc 453619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 11161606 - 11161706
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  11161606 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcaagttggtttggttcattgcc 11161705  T
Q  316 a 316  Q
    |    
T  11161706 a 11161706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 219 - 314
Target Start/End: Original strand, 43384831 - 43384926
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgc 314  Q
    ||||||||| || ||| || |||||||||||||| ||||||  ||||| |||||| || ||| |||||||||  ||||||||||||||||||||||    
T  43384831 agctcaagttcaactcatttggttcatgaaccaacttcaacgaattaattatcgaatcgaatctcgaactattttcgagttggttcggttcattgc 43384926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 221 - 325
Target Start/End: Complemental strand, 9412625 - 9412521
Alignment:
Q  221 ctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagctc 320  Q
    ||||||| |||||| || |||||||||||||||||||||   || | | ||||||| |    | |||||||||||||||||||||||||||||||||| |    
T  9412625 ctcaagttcagctcatttggttcatgaaccaagttcaacgagttcattgtcgagtcgagctccaaactataatcgagttggttcggttcattgccagccc 9412526  T
Q  321 taatg 325  Q
    |||||    
T  9412525 taatg 9412521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 33280060 - 33279981
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||||||||||| ||  || || |||||| ||||||  |||||| |||||||||||||||||||||||| ||||    
T  33280060 ggttcatgaaccaagttcgacgaatcaattatcgaatcaaattacgaactttaatcgagttggttcggttcattgtcagc 33279981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 27189188 - 27189092
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcatt 312  Q
    |||||||||||| |  ||| || |||||||||||||||||| ||  || || |||||| || |||  |||||| ||||||||||| |||||||||||    
T  27189188 ttcagctcaagttcgactcatttggttcatgaaccaagttcgacgaatcaattatcgaatctaattacgaactctaatcgagttgattcggttcatt 27189092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 34516092 - 34516152
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  |||||| |||||| |||||||||||||| || ||| |||||||||||||||    
T  34516092 ataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcagctcaa 34516152  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 34655072 - 34655171
Alignment:
Q  219 agctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    ||||||||| |  |||||| ||||||||||| |||||||||| | ||| || |||||| | |  |||||| || ||||||||  ||||||||||||||||    
T  34655072 agctcaagttcgactcgtttggttcatgaactaagttcaacaaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattgccagc 34655171  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 10749381 - 10749345
Alignment:
Q  189 aacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    |||||||||||||| || |||||||||||||||||||    
T  10749381 aacgagtcgaactacatatagctcaagttcagctcaa 10749345  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 39478150 - 39478186
Alignment:
Q  282 tcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||  ||||||||||||||||||||||||||    
T  39478150 tcgaactattttcgagttggttcggttcattgccagc 39478186  T

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Target: scaffold0022 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 124586 - 124487
Alignment:
Q  217 tcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcca 316  Q
    ||||||||||| |  ||| || ||||||||||||||||||||  ||  || | ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  124586 tcagctcaagttcgactcatttggttcatgaaccaagttcaatggaccaattgtcgagtcaaatttcgaactatattcgagttggttcggttcattgcca 124487  T

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Target: scaffold0224 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 7414 - 7314
Alignment:
Q  216 ttcagctcaagtccagctcgttaggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgcc 315  Q
    |||||||||||| | |||| || |||||||||||||||||| ||  || || |||||| || |||  |||||  ||||||| ||||||||||||||||||    
T  7414 ttcagctcaagttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgaattggttcggttcattgcc 7315  T
Q  316 a 316  Q
    |    
T  7314 a 7314  T

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Target: scaffold0224; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 7494 - 7434
Alignment:
Q  165 ataatcgaaccatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||||||  ||||||||||||| |||||||||| |||||| | | |||||||||||||||    
T  7494 ataatcgagtcatctcatgaaccaaacgagtcgacctatatatggttcaagttcagctcaa 7434  T

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Target: scaffold0171 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 21144 - 21223
Alignment:
Q  239 ggttcatgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattgccagc 318  Q
    |||||||||||||||||||||  || || |||||| || | | |||||||||  ||||||||||||||||||||| ||||    
T  21144 ggttcatgaaccaagttcaacgaatcaattatcgaatcgagtctcgaactattttcgagttggttcggttcattgtcagc 21223  T

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Target: scaffold0260 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 11531 - 11600
Alignment:
Q  244 atgaaccaagttcaacagattaaatatcgagtcaaatgtcgaactataatcgagttggttcggttcattg 313  Q
    ||||| ||||||||||  ||||| ||||||||||||| |  ||||||  |||||||||||||||||||||    
T  11531 atgaatcaagttcaacgaattaattatcgagtcaaattttaaactatgttcgagttggttcggttcattg 11600  T

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Target: scaffold0204 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 26796 - 26747
Alignment:
Q  176 atctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcaa 225  Q
    ||||| |||||| |||||||||||||| || ||||| |||||||||||||    
T  26796 atctcgtgaaccaaacgagtcgaactacatatagcttaagttcagctcaa 26747  T

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