View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4412_low_8 (Length: 396)
Name: NF4412_low_8
Description: NF4412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4412_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 43620497 - 43620223
Alignment:
| Q |
11 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacgcccagtttg |
110 |
Q |
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| T |
43620497 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacgcccagtttg |
43620398 |
T |
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| Q |
111 |
tgttgaaccagtaaagctaacctaaacatacataaaaaattaaagcaatattatatattcaacatc---atggtccatgttttgatgtcccagtctccca |
207 |
Q |
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| T |
43620397 |
tgttgaaccagtaaagctaacctaaacatacataaaaaattaaagcaatattatatattcaacatcaatatggtccatgttttgatgtcccagtctccca |
43620298 |
T |
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| Q |
208 |
gccagagtgacatcgattatcaactacatttgactgcgattccccacaacataaaaaatgtgacgtgactgttac |
282 |
Q |
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| T |
43620297 |
gccagagtgacatcgattatcaactacatttgactgcgattctccacaacataaaaaatgtgacgtgactgttac |
43620223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 43619616 - 43619517
Alignment:
| Q |
275 |
actgttaccaccacaattttaaatctcgcttactgcatcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattg |
374 |
Q |
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| T |
43619616 |
actgttaccaccacaattttaaatctcacttaccgcatcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattg |
43619517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 43627125 - 43627035
Alignment:
| Q |
11 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacg |
101 |
Q |
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| T |
43627125 |
catcatcgaaaattatgagaggtgacttgcctcctaattcaagtgaaacatgttttaaattactcttagctgcagcttgcattatttcacg |
43627035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 43626898 - 43626835
Alignment:
| Q |
310 |
catcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacatt |
373 |
Q |
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| T |
43626898 |
catctatgtccatgtgtgagctgattgcagcaccagcagttggaccaaatccgggtactacatt |
43626835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 32407441 - 32407515
Alignment:
| Q |
11 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcag |
85 |
Q |
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| T |
32407441 |
catcatcaaaaattaagaggggtgattttcctcctaattcaagtgaaactggtttcaaattacttctagctgcag |
32407515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 374
Target Start/End: Original strand, 32407657 - 32407720
Alignment:
| Q |
311 |
atcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattg |
374 |
Q |
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| T |
32407657 |
atcaatgtccatgtgtgagcttattgcagctcctgcagttgcaccaaatccaggtactacattg |
32407720 |
T |
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