View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4413-Insertion-1 (Length: 651)

Name: NF4413-Insertion-1
Description: NF4413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4413-Insertion-1
NF4413-Insertion-1
[»] chr1 (7 HSPs)
chr1 (8-651)||(37162472-37163115)
chr1 (9-212)||(37154729-37154932)
chr1 (9-214)||(37150443-37150648)
chr1 (9-214)||(37159268-37159473)
chr1 (445-574)||(37150213-37150342)
chr1 (445-574)||(37159038-37159167)
chr1 (445-574)||(37155198-37155327)
[»] chr4 (4 HSPs)
chr4 (9-214)||(91821-92026)
chr4 (9-214)||(95128-95333)
chr4 (445-592)||(95436-95583)
chr4 (445-574)||(92129-92258)
[»] chr7 (1 HSPs)
chr7 (476-607)||(46315113-46315244)


Alignment Details
Target: chr1 (Bit Score: 619; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 8 - 651
Target Start/End: Original strand, 37162472 - 37163115
Alignment:
Q  8 aatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162472 aatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcc 37162571  T
Q  108 ttgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162572 ttgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatag 37162671  T
Q  208 ctgcaatatgtaggcataaacatcaatatattttgcaattaacatattgttcttctttgatcnnnnnnncatattcttacttaattcccataatactata 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  37162672 ctgcaatatgtaggcataaacatcaatatattttgcaattaacatattgttcttctttgatcaaaaaaacatattcttacttaattcccataatactata 37162771  T
Q  308 tctcttattaaccatgcatactggtttttaagttgatttatttatagttgcttcccatgtatagttttgtacatagaaaaagctgaaatagcgacatgtt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162772 tctcttattaaccatgcatactggtttttaagttgatttatttatagttgcttcccatgtatagttttgtacatagaaaaagctgaaatagcgacatgtt 37162871  T
Q  408 aaggaaagaaaaatgtgaaattcgtctctaaaacacgtaccgacagtgggggtttggtaagtgttaattccatctataaaatttttgttgccagtaattc 507  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162872 aaggaaagaaaattgtgaaattcgtctctaaaacacgtaccgacagtgggggtttggtaagtgttaattccatctataaaatttttgttgccagtaattc 37162971  T
Q  508 ttgtcttgttgccaccatcacccaaaaacacaacatgagtcattttcttagtaacttcaacatactcatgataaacaccctccttgatatgaataacaaa 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162972 ttgtcttgttgccaccatcacccaaaaacacaacatgagtcattttcttagtaacttcaacatactcatgataaacaccctccttgatatgaataacaaa 37163071  T
Q  608 aggtttttggttcttctttggaacctgtttcaaagcatcattga 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37163072 aggtttttggttcttctttggaacctgtttcaaagcatcattga 37163115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 37154729 - 37154932
Alignment:
Q  9 atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct 108  Q
    ||||| |||||||| ||||| ||||| |||||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||| | ||||| | ||    
T  37154729 atggtacctgaaatagtacagtcacggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaagatagtct 37154828  T
Q  109 tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatagc 208  Q
    | ||| |||| || ||||  || ||||||||||||||||| || |||||||||||||| || || || || |||||   ||||| |||||||| ||||||    
T  37154829 tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgaattctcaaaacccatgttaatggcggtaaagtgatctccttgaatagc 37154928  T
Q  209 tgca 212  Q
    ||||    
T  37154929 tgca 37154932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 37150648 - 37150443
Alignment:
Q  9 atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct 108  Q
    ||||| |||||||| || || ||||| || ||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||||| ||||| ||||    
T  37150648 atggtacctgaaatggtgcagtcacggtagaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgtagaagatagcct 37150549  T
Q  109 tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatagc 208  Q
    | ||| |||| || ||||  || ||||||||||||||||| || |||||||| |||||||| || || || |||||   ||||| |||||||| ||| ||    
T  37150548 tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgagttctcgaaacccatgttaatggcggtaaagtgatctccttgaattgc 37150449  T
Q  209 tgcaat 214  Q
    ||||||    
T  37150448 tgcaat 37150443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 37159473 - 37159268
Alignment:
Q  9 atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct 108  Q
    ||||| |||||||| || || ||||| || ||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||||| ||||| ||||    
T  37159473 atggtacctgaaatggtgcagtcacggtagaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgtagaagatagcct 37159374  T
Q  109 tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatagc 208  Q
    | ||| |||| || ||||  || ||||||||||||||||| || |||||||| |||||||| || || || |||||   ||||| |||||||| ||| ||    
T  37159373 tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgagttctcgaaacccatgttaatggcggtaaagtgatctccttgaattgc 37159274  T
Q  209 tgcaat 214  Q
    ||||||    
T  37159273 tgcaat 37159268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 574
Target Start/End: Complemental strand, 37150342 - 37150213
Alignment:
Q  445 taccgacagtgggggtttggtaagtgttaattccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatg 544  Q
    |||| ||||||| ||| ||||||||  ||| |||||| ||||| ||||||||||| || ||| ||| ||| || ||||||||||| | |||||||| |||    
T  37150342 taccaacagtggcggtgtggtaagtcgtaactccatccataaagtttttgttgccggtgattattgacttcttaccaccatcaccaacaaacacaatatg 37150243  T
Q  545 agtcat-tttcttagtaacttcaacatactc 574  Q
     ||||| ||| |||  |||||||||||||||    
T  37150242 tgtcatatttgtta-aaacttcaacatactc 37150213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 574
Target Start/End: Complemental strand, 37159167 - 37159038
Alignment:
Q  445 taccgacagtgggggtttggtaagtgttaattccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatg 544  Q
    |||| ||||||| ||| ||||||||  ||| |||||| ||||| ||||||||||| || ||| ||| ||| || ||||||||||| | |||||||| |||    
T  37159167 taccaacagtggcggtgtggtaagtcgtaactccatccataaagtttttgttgccggtgattattgacttcttaccaccatcaccaacaaacacaatatg 37159068  T
Q  545 agtcat-tttcttagtaacttcaacatactc 574  Q
     ||||| ||| |||  |||||||||||||||    
T  37159067 tgtcatatttgtta-aaacttcaacatactc 37159038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 445 - 574
Target Start/End: Original strand, 37155198 - 37155327
Alignment:
Q  445 taccgacagtgggggtttggtaagtgttaattccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatg 544  Q
    |||| ||||||| ||| ||||| ||| ||| |||||| ||| | |||||||||||||| ||| | | ||| || ||||||||||| | |||||||| |||    
T  37155198 taccaacagtggtggtatggtaggtggtaactccatccatatagtttttgttgccagtgattatcgacttcttaccaccatcaccaacaaacacaatatg 37155297  T
Q  545 agtcattttcttagtaacttcaacatactc 574  Q
     ||||| || ||   |||||||||||||||    
T  37155298 tgtcatattttttaaaacttcaacatactc 37155327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 91821 - 92026
Alignment:
Q  9 atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct 108  Q
    ||||| |||||||| ||||| || || |||||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||| | ||||| ||||    
T  91821 atggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaagatagcct 91920  T
Q  109 tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatagc 208  Q
    | ||| |||| || ||||  || ||||||||||||||||| || |||||||||||||| || || ||||| |||||   ||||| |||||||| ||||||    
T  91921 tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgaattctcaaaacccatattaatggcggtaaagtgatctccttgaatagc 92020  T
Q  209 tgcaat 214  Q
    ||||||    
T  92021 tgcaat 92026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 95128 - 95333
Alignment:
Q  9 atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct 108  Q
    ||||| |||||||| ||||| || || |||||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||| | ||||| ||||    
T  95128 atggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaagatagcct 95227  T
Q  109 tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatagc 208  Q
    | ||| |||| || ||||  || ||||||||||||||||| || |||||||||||||| || || || || |||||   ||||| |||| ||| ||||||    
T  95228 tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgaattctcaaaacccatgttaatggcggtaaagtgatcttcttgaatagc 95327  T
Q  209 tgcaat 214  Q
    ||||||    
T  95328 tgcaat 95333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 592
Target Start/End: Original strand, 95436 - 95583
Alignment:
Q  445 taccgacagtgggggtttggtaagtgttaattccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatg 544  Q
    |||| ||||||| ||| ||||| ||| ||| |||||| ||| | |||||||||||||| ||| ||| ||| || ||||||||||| | |||||||| |||    
T  95436 taccaacagtggtggtatggtaggtggtaactccatccatatagtttttgttgccagtgattattgacttcttaccaccatcaccaacaaacacaatatg 95535  T
Q  545 agtcattttcttagtaacttcaacatactcatgataaacaccctcctt 592  Q
     ||||| || ||   |||||||||||||||  | |||||||| |||||    
T  95536 tgtcatattttttaaaacttcaacatactctcggtaaacaccttcctt 95583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 445 - 574
Target Start/End: Original strand, 92129 - 92258
Alignment:
Q  445 taccgacagtgggggtttggtaagtgttaattccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatg 544  Q
    |||| ||||||| ||| ||||| ||| ||| |||||| ||| | |||||||||||||| ||| ||| ||| || ||||||||||| | |||||||| |||    
T  92129 taccaacagtggtggtatggtaggtggtaactccatccatatagtttttgttgccagtgattattgacttcttaccaccatcaccaacaaacacaatatg 92228  T
Q  545 agtcattttcttagtaacttcaacatactc 574  Q
     ||||| || ||   |||||||||||||||    
T  92229 tgtcatattttttaaaacttcaacatactc 92258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 476 - 607
Target Start/End: Complemental strand, 46315244 - 46315113
Alignment:
Q  476 tccatctataaaatttttgttgccagtaattcttgtcttgttgccaccatcacccaaaaacacaacatgagtcattttcttagtaacttcaacatactca 575  Q
    |||||| || || ||||| ||||| ||||| | ||||||  | ||||||||||| |  || ||||| ||||||||  | ||||||||||||||||||||     
T  46315244 tccatcaatgaagtttttattgcccgtaatgcgtgtctttctaccaccatcaccgatgaaaacaacgtgagtcatggttttagtaacttcaacatactct 46315145  T
Q  576 tgataaacaccctccttgatatgaataacaaa 607  Q
    | |||||||||||||||||| | |||||||||    
T  46315144 ttataaacaccctccttgatgtaaataacaaa 46315113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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