View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4413-Insertion-10 (Length: 243)
Name: NF4413-Insertion-10
Description: NF4413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4413-Insertion-10 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 27303392 - 27303156
Alignment:
| Q |
7 |
atttcagtcacatacacattttgacgcctttgatcaatagataaactaaaaagtctactaactttctcacataataaatctccatcctactaaggatcac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27303392 |
atttcagtcacatacacattttgacgcctttgatcaataggtaaactaaaaagtctactaactttctcacataataaatctccatcctactaagaatcac |
27303293 |
T |
|
| Q |
107 |
accaaaaggacgatcaatcaccaatatccatcactctgaaatgatgatcatcaaaccaacttcccatattcaatccaacccatatcttaagagtttgcaa |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| |||||||||||||| |
|
|
| T |
27303292 |
accaaaaggacgatcaatcatcaatatccatcactctgaaatgatgatcatcaaaccaactttccatattcaacgtaatccatattttaagagtttgcaa |
27303193 |
T |
|
| Q |
207 |
atccatccaccaaaaggaatcatttctccttccatcc |
243 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27303192 |
atccatccaccaaaaggagtcatttctccttccatcc |
27303156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University