View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4413-Insertion-2 (Length: 502)
Name: NF4413-Insertion-2
Description: NF4413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4413-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Complemental strand, 40395538 - 40395043
Alignment:
| Q |
8 |
ccaaatacttggattctgttgttgctatttcttgaaaacaagttggtaattccttttgtgtaaagatttccatcttgggaaatgtatcttccatatagat |
107 |
Q |
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| T |
40395538 |
ccaaatacttggattctgttgttgctatttcttgaaaacaagttggtaattccttttgtgtaaagatttccatcttgggaaatgtatcttccatatagat |
40395439 |
T |
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| Q |
108 |
cctttagacagtgaatatgagataaaacaacactgacagattgaaatgattcaaatgtcactacaccaaacaaatttccttaaggctataagacacacct |
207 |
Q |
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| T |
40395438 |
cctttagacagtgaatatgagataaaaaaacactgacagattgaaatgattcaaatgtcactacaccaaacaaatttccttaaggctataagacacacct |
40395339 |
T |
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| Q |
208 |
catattgacatttgacaggtatctgttatggcttattataatagtaaaggaacctactttctgtttcattttgaa-nnnnnnnatggtttaatcaggttt |
306 |
Q |
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| T |
40395338 |
catattgacatttgacaggtatctgttatggcttattataatagtaaaggaacctactttctgtttcattttgaattttttttatggtttaatcaggttt |
40395239 |
T |
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| Q |
307 |
atttctttataaaaatttcattttctcccaaaaatttatatgcttgcattgtaattcacacttttctttaacagccaattggaatctgacagctcatgcn |
406 |
Q |
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| T |
40395238 |
atttctttataaaaatttcattttctcccaaaaatttatatgcttgcattgtaattcacacttttctttaacagccaattggaatctgacagctcatgct |
40395139 |
T |
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| Q |
407 |
nnnnnnnngggtcagctgtcttacaaagtactacataataacatagataattaggcactttttggataaacaacttagtttacctcttatcatcat |
502 |
Q |
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| T |
40395138 |
ttttttttgggtcagctgtcttacaaagtactacataataacatagataattaggcactttttggataaacaacttaatttacctcttatcatcat |
40395043 |
T |
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