View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4413-Insertion-5 (Length: 371)
Name: NF4413-Insertion-5
Description: NF4413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4413-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 371
Target Start/End: Complemental strand, 16387771 - 16387408
Alignment:
| Q |
8 |
ctatgctcatcaccaaagttttttgggcagttgtagtaaaactcttcaatgttgacaatggaagatgaagagaaaacatgttttaccaagaggcacaaaa |
107 |
Q |
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| T |
16387771 |
ctatgctcattaccaaagttttttgggcagttgtagtaaaactcttcaatgttgacaatggaagatgaagagaaaacatgttttaccaagaggcacaaaa |
16387672 |
T |
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| Q |
108 |
ttcctacaaagatgaaggatcctgatagcttcactatttcttgttctataggtggagtatgttgtggtaaagctctttgtgatctatgggctagtcgcta |
207 |
Q |
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| T |
16387671 |
ttcctacaaagatgaaggatcgtgacagcttcactatttcttgttctataggtggagtatgttgtggtaaagctctttgtgatctatgggctagtcgcta |
16387572 |
T |
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| Q |
208 |
gtgtctaagtcaattttcaagcaattggaaatcggtcaagtcaaacctattgttgttaatctgcaacttgttaacaaatctttagttcacccagaaggaa |
307 |
Q |
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| T |
16387571 |
gtgtctaagtcaattttcaagcaattggaaatcggtcaagtcaaacctattgttgttaatctgcaacttgttgacaaatctttagttcacccagaaggaa |
16387472 |
T |
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| Q |
308 |
gaattgatgatgtactgtttattggattacaaataattacataatgttgctgtttatgatcgag |
371 |
Q |
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| T |
16387471 |
gaattgatgatgtactgtttattggattacaaataattacataatgttgctgtttatgatcgag |
16387408 |
T |
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