View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4413-Insertion-9 (Length: 297)
Name: NF4413-Insertion-9
Description: NF4413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4413-Insertion-9 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 40263144 - 40263441
Alignment:
| Q |
8 |
gtctcgtctcacctcaaaaacattatatcacactcactatgtgcataaaagt-atgttatctcttcgttgtggcgaagagtaccatatttctccttcctc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40263144 |
gtctcgtctcacctcaaaaacattatattacactcactatgtgcataaaagtcatgttatctcttcgttgtggcgaagagtaccatatttctccttcctc |
40263243 |
T |
|
| Q |
107 |
ttttt-------ctacactgaggtatgttacttataattagtgtacacctttcctcctctcttttaacgagttatgtactagatcttttcttatggttaa |
199 |
Q |
| |
|
||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40263244 |
tttttacgagttctacacttaggtatgttacttacaattagtgtacacctttcctcctctcttttaacgagttatgtactagatcttttcttatggttaa |
40263343 |
T |
|
| Q |
200 |
caataaaattacaatgatgcaatttgtcctcgatgtagcgaacccnnnnnnnngcatattttcaaagtaattcacatcactaaaatctatccatacca |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40263344 |
caataaaattacaatgatgcaatttgtcctcgatgtagcgaacccaaaaaaaagcatattttcaaagtaattcacatcactaaaatctatccatacca |
40263441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University