View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4413_high_1 (Length: 571)
Name: NF4413_high_1
Description: NF4413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4413_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 16 - 555
Target Start/End: Complemental strand, 7683513 - 7682977
Alignment:
| Q |
16 |
acccgtttatttaaaatttaataataaaacataggaaaggggaatgcaacttgcgtaaaagcaaacttcaacacatataatataaacattagtggaggca |
115 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
7683513 |
acccatttatttaaaatttaataataaaacataggaaaggggaatgcaacttgcgaaaaagcaaacttcaacacatataa-ataaacattggtggaggca |
7683415 |
T |
|
| Q |
116 |
attgtccccaataccacatgagtggatgcgtgcctgactacaaacttgtttatttaaaatttaatnnnnnnnnncataggaaagggaaatgcaacttgca |
215 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7683414 |
attg-ccccaataccacatgagtggatgcgtgcctgactacaaacttgtttatttaaaatttaataacaaaa--cataggaaagggaaatgcaacttgca |
7683318 |
T |
|
| Q |
216 |
taaaa-gcaaatttcaaaatcagaaacatgacgagtacacatgtggcaagagccttggtttagggtgcactaataatggcacagctctctgaatacctaa |
314 |
Q |
| |
|
||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7683317 |
taaaaagaaaatttcaaaatcaaaaacatgacgagtacacatgtggcaagagccttggtttagggtgcactaataatggcacagctctttgaatacctaa |
7683218 |
T |
|
| Q |
315 |
gccaaaagattcatccatgtttatgtcttttgcatttagcccattttcaagctcccaatcaaacgaatgagccaaggtagcaatttgaagttggaccatt |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7683217 |
gccaaaagattcatccatgtttatgtcttttgcatttatcccattttcaagctcccaattaaacgaatgagccaaggtagcaatttgaagttggaccatt |
7683118 |
T |
|
| Q |
415 |
cgaattcctagattcaatccagcacatattctacgtccagcgccaaaaggtataacctcaaaatcatttcccttcacatcaacatcacaattctcaccac |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7683117 |
cgaattcctagattcaatccagcacatattctacgtccagcgccaaaaggtataacctcaaaatcatttcccttcacatcaacatcacaattctcaccac |
7683018 |
T |
|
| Q |
515 |
ctgataagaacctctcgggtttgaactttaatggatcaacc |
555 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
7683017 |
ctggtaagaacctctcgggtttgaactttaatggatcaacc |
7682977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 203 - 547
Target Start/End: Complemental strand, 7683926 - 7683582
Alignment:
| Q |
203 |
aatgcaacttgcataaaagcaaatttcaaaatcagaaacatgacgagtacacatgtggcaagagccttggtttagggtgcactaataatggcacagctct |
302 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |
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|
| T |
7683926 |
aatgcaacttgcataaaagcaaattccaaaatcaaaaacatgacgagtacacatgtggcaagagcctcggtttagggtgcactaa-aatggcacaactct |
7683828 |
T |
|
| Q |
303 |
ctgaatacctaagccaaaagattcatccatgtttatgtctttt-gcatttagcccattttcaagctcccaatcaaacgaatgagccaaggtagcaatttg |
401 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |
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|
| T |
7683827 |
ttgaatacctaggccaaaagcttcgtccatgtttatgtttttttgcatttagcccattttcaagctcccaattaaacgaatgagccaaagtggcaatttg |
7683728 |
T |
|
| Q |
402 |
aagttggaccattcgaattcctagattcaatccagcacatattctacgtccagcgccaaaaggtataacctcaaaatcatttcccttcacatcaacatca |
501 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || |||||||||| |||| | |||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
7683727 |
aagttggaccattcgaattcatagattcaatcccgcgcatattctacatccaacaccaaaaagtataacctcaaaatcatttcccttcacatcaacatta |
7683628 |
T |
|
| Q |
502 |
caattctcaccacctgataagaacctctcgggtttgaactttaatg |
547 |
Q |
| |
|
|| |||||||||||| ||||||||| || ||||||||| |||||| |
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|
| T |
7683627 |
cagttctcaccacctagtaagaacctttcaggtttgaacattaatg |
7683582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 230 - 555
Target Start/End: Complemental strand, 7664063 - 7663738
Alignment:
| Q |
230 |
aaaatcagaaacatgacgagtacacatgtggcaagagccttggtttagggtgcactaataatggcacagctctctgaatacctaagccaaaagattcatc |
329 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| |||| || ||||||||||| || |||||||||||||||| || | || ||| || |||||| |
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|
| T |
7664063 |
aaaatcagaaacaagacgagtacacgtgtggcgagagtctaggtttagggtgtaccaataatggcacagctcgttgcagtgtcaacccataaccttcatc |
7663964 |
T |
|
| Q |
330 |
catgtttatgtcttttgcatttagcccattttcaagctcccaatcaaacgaatgagccaaggtagcaatttgaagttggaccattcgaattcctagattc |
429 |
Q |
| |
|
|||||| || | | ||||| || ||||||||||| ||||||||||| ||||| |||| ||||| || ||||||||||||| |||| |||||| || |
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| T |
7663963 |
catgttcatttttccagcattgagtccattttcaagttcccaatcaaatgaatgggccagtgtagctgttagaagttggaccatacgaagccctagactc |
7663864 |
T |
|
| Q |
430 |
aatccagcacatattctacgtccagcgccaaaaggtataacctcaaaatcatttcccttcacatcaacatcacaattctcaccacctgataagaacctct |
529 |
Q |
| |
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| |||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| | |
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|
| T |
7663863 |
atcccaggacatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctggtaagaaccttt |
7663764 |
T |
|
| Q |
530 |
cgggtttgaactttaatggatcaacc |
555 |
Q |
| |
|
| |||||||||| ||||||||||||| |
|
|
| T |
7663763 |
caggtttgaactctaatggatcaacc |
7663738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 232 - 555
Target Start/End: Original strand, 7619831 - 7620154
Alignment:
| Q |
232 |
aatcagaaacatgacgagtacacatgtggcaagagccttggtttagggtgcactaataatggcacagctctctgaatacctaagccaaaagattcatcca |
331 |
Q |
| |
|
||||| ||||| ||||||||||| |||||| |||| || |||||||||||||| ||||||||||||||| |||| || ||| || |||||||| |
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|
| T |
7619831 |
aatcaaaaacaagacgagtacacgtgtggcgagagtctaggtttagggtgcaccgataatggcacagctcgttgaagtgtcaacccataaccttcatcca |
7619930 |
T |
|
| Q |
332 |
tgtttatgtcttttgcatttagcccattttcaagctcccaatcaaacgaatgagccaaggtagcaatttgaagttggaccattcgaattcctagattcaa |
431 |
Q |
| |
|
|||| || | | ||||| || ||||||||||| ||||||||||| ||||| || | ||||| || ||||||||||||| |||| |||||| ||| |
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|
| T |
7619931 |
tgttcatttttccagcattgagtccattttcaagttcccaatcaaatgaatgggctagtgtagctgttagaagttggaccatacgaagccctagactcat |
7620030 |
T |
|
| Q |
432 |
tccagcacatattctacgtccagcgccaaaaggtataacctcaaaatcatttcccttcacatcaacatcacaattctcaccacctgataagaacctctcg |
531 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| || |
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|
| T |
7620031 |
cccaggacatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctggtaagaacctttca |
7620130 |
T |
|
| Q |
532 |
ggtttgaactttaatggatcaacc |
555 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
7620131 |
ggtttgaactctaatggatcaacc |
7620154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 346 - 555
Target Start/End: Complemental strand, 7669644 - 7669435
Alignment:
| Q |
346 |
gcatttagcccattttcaagctcccaatcaaacgaatgagccaaggtagcaatttgaagttggaccattcgaattcctagattcaatccagcacatattc |
445 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||||| || | ||||| || |||| || ||||| |||| || ||| ||| ||| ||||||||| |
|
|
| T |
7669644 |
gcattgagcccattttcaagttcccaatcaaatgaatgggctagtgtagctgttagaagctgtaccatacgaagcccaagactcatcccaacacatattc |
7669545 |
T |
|
| Q |
446 |
tacgtccagcgccaaaaggtataacctcaaaatcatttcccttcacatcaacatcacaattctcaccacctgataagaacctctcgggtttgaactttaa |
545 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| || |||||||| ||| |
|
|
| T |
7669544 |
tacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctaataagaacctttcaggtttgaatcctaa |
7669445 |
T |
|
| Q |
546 |
tggatcaacc |
555 |
Q |
| |
|
|||||||||| |
|
|
| T |
7669444 |
tggatcaacc |
7669435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 7683546 - 7683443
Alignment:
| Q |
126 |
ataccacatgagtggatgcgtgcctgactacaaacttgtttatttaaaatttaatnnnnnnnnncataggaaagggaaatgcaacttgcataaaagcaaa |
225 |
Q |
| |
|
||||||||||||||||| || || ||||||||||| ||||||||||||||||| |||||||||||| |||||||||||| ||||||||| |
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|
| T |
7683546 |
ataccacatgagtggatccgcgcatgactacaaacccatttatttaaaatttaat--aataaaacataggaaaggggaatgcaacttgcgaaaaagcaaa |
7683449 |
T |
|
| Q |
226 |
tttcaa |
231 |
Q |
| |
|
||||| |
|
|
| T |
7683448 |
cttcaa |
7683443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 433 - 515
Target Start/End: Complemental strand, 45481358 - 45481276
Alignment:
| Q |
433 |
ccagcacatattctacgtccagcgccaaaaggtataacctcaaaatcatttcccttcacatcaacatcacaattctcaccacc |
515 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| | |||||||||||| | ||||||||||| |
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|
| T |
45481358 |
ccagcacatattctacgtccagcaccaaaaggtatcacctcaaagtcatttcccctaacatcaacatcaaacttctcaccacc |
45481276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 12325852 - 12325803
Alignment:
| Q |
82 |
ttcaacacatataatataaacattagtggaggcaattgtccccaatacca |
131 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||| | ||||||||| |
|
|
| T |
12325852 |
ttcaacacatataacataaacattagtgggggcaatttcctccaatacca |
12325803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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