View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4413_high_5 (Length: 305)

Name: NF4413_high_5
Description: NF4413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4413_high_5
NF4413_high_5
[»] scaffold0683 (1 HSPs)
scaffold0683 (146-296)||(4710-4863)
[»] chr5 (3 HSPs)
chr5 (152-296)||(41843386-41843532)
chr5 (223-266)||(8433020-8433063)
chr5 (262-296)||(8433146-8433180)
[»] chr8 (8 HSPs)
chr8 (151-296)||(176404-176550)
chr8 (144-276)||(45294131-45294265)
chr8 (223-296)||(1175723-1175797)
chr8 (223-266)||(44022331-44022374)
chr8 (262-296)||(9491292-9491326)
chr8 (262-296)||(44022214-44022248)
chr8 (188-266)||(41162399-41162477)
chr8 (223-265)||(8341236-8341278)
[»] chr3 (7 HSPs)
chr3 (243-296)||(22462196-22462249)
chr3 (243-296)||(22486566-22486619)
chr3 (147-265)||(6935464-6935585)
chr3 (223-266)||(2669784-2669827)
chr3 (262-296)||(2614421-2614455)
chr3 (223-265)||(13795713-13795755)
chr3 (223-265)||(53489144-53489186)
[»] chr4 (3 HSPs)
chr4 (223-266)||(31880113-31880156)
chr4 (223-265)||(9607202-9607244)
chr4 (223-265)||(53685430-53685472)
[»] chr6 (5 HSPs)
chr6 (188-266)||(11575113-11575191)
chr6 (223-265)||(2356700-2356742)
chr6 (262-296)||(11574996-11575030)
chr6 (223-265)||(12083108-12083150)
chr6 (223-257)||(23070438-23070472)
[»] chr2 (8 HSPs)
chr2 (188-266)||(35320450-35320528)
chr2 (188-265)||(45155670-45155748)
chr2 (223-265)||(3400054-3400096)
chr2 (223-265)||(7485174-7485216)
chr2 (223-265)||(21190281-21190323)
chr2 (223-265)||(30176188-30176230)
chr2 (262-296)||(35320672-35320706)
chr2 (223-265)||(41213387-41213429)
[»] chr1 (3 HSPs)
chr1 (223-259)||(24183843-24183879)
chr1 (262-296)||(24183969-24184003)
chr1 (223-265)||(48660209-48660251)
[»] chr7 (2 HSPs)
chr7 (223-265)||(25859137-25859179)
chr7 (225-265)||(47116343-47116383)


Alignment Details
Target: scaffold0683 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 146 - 296
Target Start/End: Complemental strand, 4863 - 4710
Alignment:
Q  146 caggaccgtccctatgtaactggaggctccgttc--cagtaaatataggcccttaattaaataaaaatataannnnnnn-aaaagagcaatcatctattt 242  Q
    |||| |||||||| ||||||||||||||| | ||  |||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||    
T  4863 cagggccgtccctttgtaactggaggctcggctctccagtaaatataggcccctaattaaataaaaatataattttttttaaaagagcaatcatctattt 4764  T
Q  243 aaatttaaaataagatccgtaaaaggtttataatgttttatttgagagaataat 296  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4763 aaattgaaaataagatccgtaaaaggtttataatgttttatttgagagaataat 4710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 152 - 296
Target Start/End: Complemental strand, 41843532 - 41843386
Alignment:
Q  152 cgtccctatgtaactggaggctccgttc--cagtaaatataggcccttaattaaataaaaatataannnnnnnaaaagagcaatcatctatttaaattta 249  Q
    ||||||| |||||| |||||||| | ||  |||||||||||||||| |||||||||||||||||||       ||||||||||||||||||||||||| |    
T  41843532 cgtccctttgtaaccggaggctcggctctccagtaaatataggcccctaattaaataaaaatataatttttttaaaagagcaatcatctatttaaattga 41843433  T
Q  250 aaataagatccgtaaaaggtttataatgttttatttgagagaataat 296  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  41843432 aaataagatccgtaaaaggtttataatgttttatttgagtgaataat 41843386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 8433020 - 8433063
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaaa 266  Q
    |||| |||||||||||||||||||| ||||||||||||||||||    
T  8433020 aaaaaagcaatcatctatttaaattgaaaataagatccgtaaaa 8433063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 8433146 - 8433180
Alignment:
Q  262 taaaaggtttataatgttttatttgagagaataat 296  Q
    |||||||||||||||||||||||||||||||||||    
T  8433146 taaaaggtttataatgttttatttgagagaataat 8433180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 151 - 296
Target Start/End: Complemental strand, 176550 - 176404
Alignment:
Q  151 ccgtccctatgtaactggaggctccgttc--cagtaaatataggcccttaattaaataaaaatataannnnnnnaaaagagcaatcatctatttaaattt 248  Q
    |||||||||| ||||||||| ||| | ||  |||||||||||||||| ||| |||||||||||| ||       ||||||||||||||||||||||||||    
T  176550 ccgtccctatataactggagactcggctctccagtaaatataggcccctaactaaataaaaata-aatttttttaaaagagcaatcatctatttaaattt 176452  T
Q  249 aaaataagatccgtaaaaggtttataatgttttatttgagagaataat 296  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  176451 aaaataagatccgtaaaaggtttaaaatgttttatttgagagaataat 176404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 45294131 - 45294265
Alignment:
Q  144 tgcaggaccgtccctatgtaactggaggctc--cgttccagtaaatataggcccttaattaaataaaaatataannnnnnnaaaagagcaatcatctatt 241  Q
    |||||||||||||||||||||||||||||||  |  |||||||||||||||||| ||||| |||||||||||||       |||||||||||||||||||    
T  45294131 tgcaggaccgtccctatgtaactggaggctcgactctccagtaaatataggcccctaattgaataaaaatataatttttttaaaagagcaatcatctatt 45294230  T
Q  242 taaatttaaaataagatccgtaaaaggtttataat 276  Q
    |||||| || ||||||||| |||||||||||||||    
T  45294231 taaattaaagataagatccataaaaggtttataat 45294265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 1175723 - 1175797
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaaaggtttataatg-ttttatttgagagaataat 296  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||||||| ||||    
T  1175723 aaaagagcaatcatctatttaaattgaaaataaggtccgtaaaaagtttataatgtttttatttgagagagtaat 1175797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 44022374 - 44022331
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaaa 266  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  44022374 aaaagagcaatcatctatttaaattgaaaataagatctgtaaaa 44022331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 9491292 - 9491326
Alignment:
Q  262 taaaaggtttataatgttttatttgagagaataat 296  Q
    |||||||||||||||||||||||||||||||||||    
T  9491292 taaaaggtttataatgttttatttgagagaataat 9491326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 44022248 - 44022214
Alignment:
Q  262 taaaaggtttataatgttttatttgagagaataat 296  Q
    |||||||||||||||||||||||||||||||||||    
T  44022248 taaaaggtttataatgttttatttgagagaataat 44022214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 41162477 - 41162399
Alignment:
Q  188 ataggcccttaattaaataaaaatataannnnnnnaaaagagcaatcatctatttaaatttaaaataagatccgtaaaa 266  Q
    |||||||| |||| |||||||||| |||       ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  41162477 ataggcccataataaaataaaaatgtaatttttttaaaagagcaattatctatttaaattgaaaataagaaccgtaaaa 41162399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 8341236 - 8341278
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||    
T  8341236 aaaagagcaattatcaatttaaattaaaaataagatccgtaaa 8341278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 22462196 - 22462249
Alignment:
Q  243 aaatttaaaataagatccgtaaaaggtttataatgttttatttgagagaataat 296  Q
    ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  22462196 aaattgaaaataagatatgtaaaaggtttataatgttttatttgagagaataat 22462249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 22486566 - 22486619
Alignment:
Q  243 aaatttaaaataagatccgtaaaaggtttataatgttttatttgagagaataat 296  Q
    ||||| ||||||||||  |||||||||||||||||||||||||||||| |||||    
T  22486566 aaattaaaaataagatatgtaaaaggtttataatgttttatttgagagcataat 22486619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 6935464 - 6935585
Alignment:
Q  147 aggaccgtccctatgtaactggaggctc--cgttccagtaaatataggcccttaattaaataaaaa-tataannnnnnnaaaagagcaatcatctattta 243  Q
    ||||||||||||| |||| |||||||||  |  ||  |||||||||||||| |||| ||||||||| |||||       ||||||||||| |||||||||    
T  6935464 aggaccgtccctaggtaattggaggctcgactctcatgtaaatataggcccctaataaaataaaaaatataatttttttaaaagagcaattatctattta 6935563  T
Q  244 aatttaaaataagatccgtaaa 265  Q
    |||| ||||||| ||| |||||    
T  6935564 aattgaaaataaaatcggtaaa 6935585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 2669784 - 2669827
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaaa 266  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||    
T  2669784 aaaagagcagtcatctatttaaattgaaaataagattcgtaaaa 2669827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 2614455 - 2614421
Alignment:
Q  262 taaaaggtttataatgttttatttgagagaataat 296  Q
    ||||||||||||||||||||| |||||||||||||    
T  2614455 taaaaggtttataatgttttaattgagagaataat 2614421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 13795755 - 13795713
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||| || |||||||||||||||||||| |||||||    
T  13795755 aaaagagcaattatttatttaaatttaaaataagaaccgtaaa 13795713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 53489144 - 53489186
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||    
T  53489144 aaaagagcaattatcaatttaaattgaaaataagatccgtaaa 53489186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 31880113 - 31880156
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaaa 266  Q
    ||||||||||||||||||||||||| |||||||||||| |||||    
T  31880113 aaaagagcaatcatctatttaaattgaaaataagatccctaaaa 31880156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 9607244 - 9607202
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||    
T  9607244 aaaagagcaattatcaatttaaattaaaaataagatccgtaaa 9607202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 53685430 - 53685472
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||    
T  53685430 aaaagagcaattatcaatttaaattaaaaataagatccgtaaa 53685472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 11575191 - 11575113
Alignment:
Q  188 ataggcccttaattaaataaaaatataannnnnnnaaaagagcaatcatctatttaaatttaaaataagatccgtaaaa 266  Q
    |||||||| |||| |||||||||| |||       ||||||||||| |||||||| |||| ||||||||||||||||||    
T  11575191 ataggcccctaataaaataaaaatgtaatttttttaaaagagcaattatctatttcaattgaaaataagatccgtaaaa 11575113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 2356700 - 2356742
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||    
T  2356700 aaaagagcaattatcaatttaaattaaaaataagatccgtaaa 2356742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 11575030 - 11574996
Alignment:
Q  262 taaaaggtttataatgttttatttgagagaataat 296  Q
    ||||||||||||||| |||||||||||||||||||    
T  11575030 taaaaggtttataatattttatttgagagaataat 11574996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 12083108 - 12083150
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||    
T  12083108 aaaagagaaattatctatttaaatttaaaataagaaccgtaaa 12083150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 23070438 - 23070472
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataaga 257  Q
    ||||||||||| |||||||||||||||||||||||    
T  23070438 aaaagagcaattatctatttaaatttaaaataaga 23070472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 35320450 - 35320528
Alignment:
Q  188 ataggcccttaattaaataaaaatataannnnnnnaaaagagcaatcatctatttaaatttaaaataagatccgtaaaa 266  Q
    |||||| | |||| ||||||||||||||       |||| |||||||||||||||| ||| ||||||||||||||||||    
T  35320450 ataggctcctaataaaataaaaatataatttttttaaaaaagcaatcatctatttatattgaaaataagatccgtaaaa 35320528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 45155670 - 45155748
Alignment:
Q  188 ataggcccttaattaaataaaaa-tataannnnnnnaaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||||| ||||||||| |||||       ||||||||||| ||||||| ||||| |||||||||||||||||    
T  45155670 ataggcccttaataaaataaaaaatataatttttctaaaagagcaattatctattgaaattgaaaataagatccgtaaa 45155748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 3400096 - 3400054
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||| |||||||||||| |||||||||| |||||||    
T  3400096 aaaagagcaattatctatttaaatgtaaaataagaaccgtaaa 3400054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 7485216 - 7485174
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||    
T  7485216 aaaagagcaatcatctatttaaattgaaaataaaatccataaa 7485174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 21190281 - 21190323
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||    
T  21190281 aaaagagcaattatctattgaaattgaaaataagatccgtaaa 21190323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 30176230 - 30176188
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||    
T  30176230 aaaagagcaattatctattgaaattgaaaataagatccgtaaa 30176188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 35320672 - 35320706
Alignment:
Q  262 taaaaggtttataatgttttatttgagagaataat 296  Q
    |||||||||||||||||||||||||| ||||||||    
T  35320672 taaaaggtttataatgttttatttgatagaataat 35320706  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 41213387 - 41213429
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||| |||||||||||||||||| |||| |||||||    
T  41213387 aaaagagcaattatctatttaaatttaaaacaagaaccgtaaa 41213429  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 24183843 - 24183879
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatc 259  Q
    ||||||||||||||||||||||||| |||||||||||    
T  24183843 aaaagagcaatcatctatttaaattgaaaataagatc 24183879  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 24183969 - 24184003
Alignment:
Q  262 taaaaggtttataatgttttatttgagagaataat 296  Q
    |||||||||||||||||||||||||| ||||||||    
T  24183969 taaaaggtttataatgttttatttgaaagaataat 24184003  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 48660251 - 48660209
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||    
T  48660251 aaaagagcaattatcaatttaaattaaaaataagatccgtaaa 48660209  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 25859179 - 25859137
Alignment:
Q  223 aaaagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||    
T  25859179 aaaagagcaattatcaatttaaattaaaaataagatccgtaaa 25859137  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 47116383 - 47116343
Alignment:
Q  225 aagagcaatcatctatttaaatttaaaataagatccgtaaa 265  Q
    ||||||||| ||||||||||||| ||||||| |||||||||    
T  47116383 aagagcaattatctatttaaattgaaaataaaatccgtaaa 47116343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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