View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4413_low_3 (Length: 416)
Name: NF4413_low_3
Description: NF4413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4413_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 35978320 - 35977940
Alignment:
| Q |
16 |
gatgaacacagtttctgcatactatccaccttcaaggcttcaacaatcacactgcnnnnnnnnnnnnnnnnnnnnn-gcattcattaaacaagtttaaga |
114 |
Q |
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| T |
35978320 |
gatgaacacagtttctgcatactatccaccttcaaggcttcaacaatcacactgcaaaaaaatatataaaaataaaagcattcaataaacaagtttaaga |
35978221 |
T |
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| Q |
115 |
caaacaaaatgcttaacattattaattaaccaaaagttaataggtattaacctagccaaagcaggtcgtttccgatcaggctgaccatcttcagcagaag |
214 |
Q |
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| T |
35978220 |
caaacaaaatgcttaacattattaattaaccaaaagttaataggtattaacctagccaaagcaggtcgtttccgatcaggctgaccatcttcagcagaag |
35978121 |
T |
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| Q |
215 |
tggaatccaaacttctcttctccgccctagctacatgatgatcaacgtaccttccgtgcattctgctaattccttgtttgtttggttccaaaagctagca |
314 |
Q |
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| T |
35978120 |
tggaatccaaacttctcttctccgccctagctacatgatgatcaacgtaccttccgtgcattctgctaattccttgtttgtttggttccaaaagctagca |
35978021 |
T |
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| Q |
315 |
caaatgttgtgtgtaggttttaagttataaatttgactgaaaaataatagtaatgaaaagcgaaaaaatgtagtacagttg |
395 |
Q |
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| T |
35978020 |
aaaatgttgtgtgtaggttttaagttataaatttgactgaaaaataatagtaatgaaaagcgaaaaaatgtagtacagttg |
35977940 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 2964163 - 2964216
Alignment:
| Q |
16 |
gatgaacacagtttctgcatactatccaccttcaaggcttcaacaatcacactg |
69 |
Q |
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||||| || |||||||||| ||| ||||||||||| ||||||||||| |||||| |
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| T |
2964163 |
gatgagcaaagtttctgcagactgtccaccttcaacgcttcaacaattacactg |
2964216 |
T |
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