View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414-Insertion-10 (Length: 236)
Name: NF4414-Insertion-10
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414-Insertion-10 |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 43559946 - 43559718
Alignment:
| Q |
8 |
ataacttacctatgagtaattatcacacaagtcttaaaccatgtgatcagagtcaattcggacttaattcaagctatggtttcacttcaatgccgagtct |
107 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43559946 |
ataacttacctatgagtaattatcacacaactcttaaaccatgtgatcagagtcaattcggacttaattcaagctatggtttcacttcaatgccgagtct |
43559847 |
T |
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| Q |
108 |
aacaaattcagatcacgcgaatgtgtccgtgacagagttttcagacaacaattcagcttcaaaaatcaattcattcttcatgaatgatcaagtgaaagaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43559846 |
aacaaattcagatcacgcgaatgtgtccgtgacagagttttcagacaacaattcagcttcaaaaatcaattcattcttcatgaatgatcaagtgaaagaa |
43559747 |
T |
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| Q |
208 |
agcaattcaagcaatagctcaaatatgag |
236 |
Q |
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| T |
43559746 |
agcaattcaagcaatagctcaaatatgag |
43559718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 1992525 - 1992297
Alignment:
| Q |
8 |
ataacttacctatgagtaattatcacacaagtcttaaaccatgtgatcagagtcaattcggacttaattcaagctatggtttcacttcaatgccgagtct |
107 |
Q |
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||||||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1992525 |
ataacttacctatgactaattatcacgcaagccttaaaccatgtgattagagtcaattcggacttaattcaagctatggattcacttcaatgccgagtct |
1992426 |
T |
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| Q |
108 |
aacaaattcagatcacgcgaatgtgtccgtgacagagttttcagacaacaattcagcttcaaaaatcaattcattcttcatgaatgatcaagtgaaagaa |
207 |
Q |
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| T |
1992425 |
aacaaattcggatcacgcgaatgtgtttgtgacagagttttcatacaacaattcagcttcaaaattcagctcattgttcattaatgatcaagggaaagaa |
1992326 |
T |
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| Q |
208 |
agcaattcaagcaatagctcaaatatgag |
236 |
Q |
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||||||||| ||||||||||||||||||| |
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| T |
1992325 |
agcaattcatgcaatagctcaaatatgag |
1992297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 44613852 - 44613734
Alignment:
| Q |
118 |
gatcacgcgaatgtgtccgtgacagagttttcagacaacaattcagcttcaaaaatcaattcattcttcatgaatgatcaagtgaaagaaagcaattcaa |
217 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||| ||||| |||||||||| |||||||||||||||| |
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| T |
44613852 |
gatcacgcgaatgtgtttgtgacagagttttcatacaacaattcagcttcaaaattcagctcattgttcattaatgatcaagggaaagaaagcaattcat |
44613753 |
T |
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| Q |
218 |
gcaatagctcaaatatgag |
236 |
Q |
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||||||||||||||||||| |
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| T |
44613752 |
gcaatagctcaaatatgag |
44613734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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