View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414-Insertion-12 (Length: 191)
Name: NF4414-Insertion-12
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414-Insertion-12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 2920692 - 2920876
Alignment:
| Q |
7 |
agaaagccaagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcagtggcacggaacaagtag |
106 |
Q |
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| T |
2920692 |
agaaagccaagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaacaaagcagtggcacggaacaagtag |
2920791 |
T |
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| Q |
107 |
aaaataagcacatataaacaagaagggtggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccatagatctgca |
191 |
Q |
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| T |
2920792 |
aaaataagcacatataaacaagaagggtggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccatagatctgca |
2920876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 18246330 - 18246480
Alignment:
| Q |
36 |
agctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcagtggcacggaacaagtagaaaataagcacatataaaca-agaagggt |
134 |
Q |
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| T |
18246330 |
agctagcagttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaatgaacaagtagaaaataagcacagatatacatggaagggc |
18246429 |
T |
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| Q |
135 |
ggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccataga |
185 |
Q |
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| T |
18246430 |
ggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccataga |
18246480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 16989936 - 16989757
Alignment:
| Q |
7 |
agaaagccaagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcagtggcacggaacaagtag |
106 |
Q |
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| T |
16989936 |
agaaagccaagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctaccaaccttataaaacaagcagtggcaaggaacaagtag |
16989837 |
T |
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| Q |
107 |
aaaataagcacatataaaca-agaagggtggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccataga |
185 |
Q |
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| T |
16989836 |
aaaataagcacaaatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccataga |
16989757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 1259056 - 1259227
Alignment:
| Q |
15 |
aagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcagtggcacggaacaagtagaaaataag |
114 |
Q |
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| T |
1259056 |
aagcaccggaagtgctaaaagagctagttgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaacaagtagaaaataag |
1259155 |
T |
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| Q |
115 |
cacatataaaca-agaagggtggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccataga |
185 |
Q |
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| T |
1259156 |
cacagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccataga |
1259227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 37242344 - 37242515
Alignment:
| Q |
15 |
aagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcagtggcacggaacaagtagaaaataag |
114 |
Q |
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| T |
37242344 |
aagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaacaagtagaaaataag |
37242443 |
T |
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| Q |
115 |
cacatataaaca-agaagggtggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccataga |
185 |
Q |
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| T |
37242444 |
cacagatatacatggaagggcggaaacaagccaaactccataaaagtaaatttacaaaatccctcccataga |
37242515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 34873357 - 34873273
Alignment:
| Q |
15 |
aagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcagtggcacggaa |
99 |
Q |
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| T |
34873357 |
aagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaa |
34873273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 31234507 - 31234679
Alignment:
| Q |
15 |
aagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcagtggcacggaacaagtagaaaataag |
114 |
Q |
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|||||| ||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31234507 |
aagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaacaagtagaaaataag |
31234606 |
T |
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| Q |
115 |
cacatataaaca-agaagggtggaaacaaaccaaattcc-aaaaaagtaaatttacaaaatccctcccataga |
185 |
Q |
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|||| ||| ||| |||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
31234607 |
cacagatatacatggaagggcggaaacaatccaaactccaaaaaaagtaaatttacaaaatccctcccataga |
31234679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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